2E4PA

Crystal structure of bpha3 (oxidized form)
Total Genus 19

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
19
sequence length
108
structure length
108
Chain Sequence
TFTKACSVDEVPPGEALQVSHDAQKVAIFNVDGEFFATQDQCTHGEWSLSEGGYLDGDVVECSLHMGKFCVRTGKVKSPPPCEPLKVYPIRIEGRDVLVDFSRAALHA

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYS13 (97-100)S1 (4-8)TI1 (8-11)TII'3 (94-97)S3 (25-32)TI2 (9-12)TII1 (13-16)S2 (16-22)TII'1 (22-25)S11 (87-89)S4 (35-40)TI4 (49-52)O1 (46-48)S5 (42-43)O2 (83-83)TI3 (43-46)S8 (60-63)S7 (54-57)TIV3 (56-59)TI7 (71-74)S9 (69-71)TI6 (64-67)TI8 (72-75)TIV5 (102-105)S12 (91-94)TIV1 (31-34)S6 (48-49)S10 (77-79)TI9 (101-104)Updating...
connected with : NaN
molecule tags Electron transport
source organism Pseudomonas sp.
publication title Molecular Mechanism of the Redox-dependent Interaction between NADH-dependent Ferredoxin Reductase and Rieske-type [2Fe-2S] Ferredoxin
pubmed doi rcsb
molecule keywords Biphenyl dioxygenase ferredoxin subunit
total genus 19
structure length 108
sequence length 108
chains with identical sequence B
ec nomenclature
pdb deposition date 2006-12-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00355 Rieske Rieske [2Fe-2S] domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 2e4pA00
1NU1E 4HM7A 2BMQA 1BE3E 2JO6A 2Q3WA 1NTZE 4H0LD 1KB9E 1NTKE 3L73E 4NBBD 3VCAA 2XRXA 3VCPA 4QUQA 4QDCA 3GOBA 2NUKA 1VCKA 3DQYA 1UUVA 1G8KB 5HL4A 2DE7D 1SQPE 3EN1A 4QCKA 4OGQD 2YIUC 1SJGA 3H1KE 2XSOA 2HMKA 4QDFB 4AIVA 2CKFA 1KYOE 2FYNC 2NVFA 3GL2A 1SQBE 2FYUE 1JM1A 3H1LE 1PP9E 2HMLA 4PD4E 3L70E 3EQQA 2D2CD 4P1BH 4QDFA 5KKZC 3AZCA 4HM3A 4QURA 1PPJE 1SQXE 1VM9A 5BOKA 2ZT9D 3TGUE 2NVGA 4HM6A 2GBWA 1NYKA 2QJPC 3GKEA 4NBHD 1G8JB 2QJKC 3C0DA 2B1XA 2DE5D 4NBDD 2E76D 1ULJA 3CX5E 1SQVE 3H1JE 2E75D 3GZYA 3L71E 2JZAA 4QUPA 4NB8D 2E4PA 2E74D 3GTSA 4HM5A 2NWFA 3VMGD 1BCCE 2NUMA 4HM2A 2YFJA 3VMHD 5CXMA 4H13D 4NBGD 2IBZE 5KLIC 2BMRA 2HMNA 2XSHA 3GZXA 2A06E 1L0NE 3D89A 2DE6D 1ZRTE 2GBXA 4H44D 3H1HE 2B24A 2YVJB 1NTME 2HMMA 3CWBE 2XR8A 4NBED 2ZYLA 3GTEA 4HKVA 5AEWA 2I7FA 4QDDA 3L72E 2NVEA 1O7NA 1ULIA 4AAYB 1VF5D 2QJYC 3L74E 1P84E 4HM1A 1EZVE 5AEUA 2HMJA 1O7WA 4NB9D 2BCCE 4P1CH 3L75E 4PV1D 3VMID 4HJLA 3GB4A 3GL0A 1SQQE 1FQTA 1O7GA 3FOUA 2YFIA 1L0LE 2BMOA 4HM4A 4NBFD 3CXHE 4NBAD 2E4QA 1O7HA 2HMOA 2QPZA 1RFSA 4U3FE 4EMJB 4HM8A 4HM0A 1UUWA 4NBCD 3N0QA 2YFLA 1NDOA 5KLVE 3GCEA 1RIEA 3H1IE 1Q90C 1EG9A 1WQLA 1O7MA 3BCCE 1O7PA
chains in the Genus database with same CATH superfamily
1NU1E 4HM7A 2BMQA 1BE3E 2JO6A 2Q3WA 1NTZE 4H0LD 1KB9E 1NTKE 3L73E 4NBBD 3VCAA 2XRXA 3VCPA 4QUQA 4QDCA 3GOBA 2NUKA 1VCKA 3DQYA 1UUVA 1G8KB 5HL4A 2DE7D 1SQPE 3EN1A 4QCKA 4OGQD 2YIUC 1SJGA 3H1KE 2XSOA 2HMKA 4QDFB 4AIVA 2CKFA 1KYOE 2FYNC 2NVFA 3GL2A 1SQBE 2FYUE 1JM1A 3H1LE 1PP9E 2HMLA 4PD4E 3L70E 3EQQA 2D2CD 4P1BH 4QDFA 5KKZC 3AZCA 4HM3A 4QURA 1PPJE 1SQXE 1VM9A 5BOKA 2ZT9D 3TGUE 2NVGA 4HM6A 2GBWA 1NYKA 2QJPC 3GKEA 4NBHD 1G8JB 2QJKC 3C0DA 2B1XA 2DE5D 4NBDD 2E76D 1ULJA 3CX5E 1SQVE 3H1JE 2E75D 3GZYA 3L71E 2JZAA 4QUPA 4NB8D 2E4PA 2E74D 3GTSA 4HM5A 2NWFA 3VMGD 1BCCE 2NUMA 4HM2A 2YFJA 3VMHD 5CXMA 4H13D 4NBGD 2IBZE 5KLIC 2BMRA 2HMNA 2XSHA 3GZXA 2A06E 1L0NE 3D89A 2DE6D 1ZRTE 2GBXA 4H44D 3H1HE 2B24A 2YVJB 1NTME 2HMMA 3CWBE 2XR8A 4NBED 2ZYLA 3GTEA 4HKVA 5AEWA 2I7FA 4QDDA 3L72E 2NVEA 1O7NA 1ULIA 4AAYB 1VF5D 2QJYC 3L74E 1P84E 4HM1A 1EZVE 5AEUA 2HMJA 1O7WA 4NB9D 2BCCE 4P1CH 3L75E 4PV1D 3VMID 4HJLA 3GB4A 3GL0A 1SQQE 1FQTA 1O7GA 3FOUA 2YFIA 1L0LE 2BMOA 4HM4A 4NBFD 3CXHE 4NBAD 2E4QA 1O7HA 2HMOA 2QPZA 1RFSA 4U3FE 4EMJB 4HM8A 4HM0A 1UUWA 4NBCD 3N0QA 2YFLA 1NDOA 5KLVE 3GCEA 1RIEA 3H1IE 1Q90C 1EG9A 1WQLA 1O7MA 3BCCE 1O7PA
chains in the Genus database with same CATH topology
1NU1E 4HM7A 2BMQA 1BE3E 2JO6A 2Q3WA 1NTZE 4H0LD 1KB9E 1NTKE 3L73E 4NBBD 3VCAA 2XRXA 3VCPA 4QUQA 4QDCA 3GOBA 2NUKA 1VCKA 3DQYA 1UUVA 1G8KB 5HL4A 2DE7D 1SQPE 3EN1A 4QCKA 4OGQD 2YIUC 1SJGA 3H1KE 2XSOA 2HMKA 4QDFB 4AIVA 2CKFA 1KYOE 2FYNC 2NVFA 3GL2A 1SQBE 2FYUE 1JM1A 3H1LE 1PP9E 2HMLA 4PD4E 3L70E 3EQQA 2D2CD 4P1BH 4QDFA 5KKZC 3AZCA 4HM3A 4QURA 1PPJE 1SQXE 1VM9A 5BOKA 2ZT9D 3TGUE 2NVGA 4HM6A 2GBWA 1NYKA 2QJPC 3GKEA 4NBHD 1G8JB 2QJKC 3C0DA 2B1XA 2DE5D 4NBDD 2E76D 1ULJA 3CX5E 1SQVE 3H1JE 2E75D 3GZYA 3L71E 2JZAA 4QUPA 4NB8D 2E4PA 2E74D 3GTSA 4HM5A 2NWFA 3VMGD 1BCCE 2NUMA 4HM2A 2YFJA 3VMHD 5CXMA 4H13D 4NBGD 2IBZE 5KLIC 2BMRA 2HMNA 2XSHA 3GZXA 2A06E 1L0NE 3D89A 2DE6D 1ZRTE 2GBXA 4H44D 3H1HE 2B24A 2YVJB 1NTME 2HMMA 3CWBE 2XR8A 4NBED 2ZYLA 3GTEA 4HKVA 5AEWA 2I7FA 4QDDA 3L72E 2NVEA 1O7NA 1ULIA 4AAYB 1VF5D 2QJYC 3L74E 1P84E 4HM1A 1EZVE 5AEUA 2HMJA 1O7WA 4NB9D 2BCCE 4P1CH 3L75E 4PV1D 3VMID 4HJLA 3GB4A 3GL0A 1SQQE 1FQTA 1O7GA 3FOUA 2YFIA 1L0LE 2BMOA 4HM4A 4NBFD 3CXHE 4NBAD 2E4QA 1O7HA 2HMOA 2QPZA 1RFSA 4U3FE 4EMJB 4HM8A 4HM0A 1UUWA 4NBCD 3N0QA 2YFLA 1NDOA 5KLVE 3GCEA 1RIEA 3H1IE 1Q90C 1EG9A 1WQLA 1O7MA 3BCCE 1O7PA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1NU1 E;  4HM7 A;  2BMQ A;  1BE3 E;  2JO6 A;  2Q3W A;  1NTZ E;  4H0L D;  1KB9 E;  1NTK E;  3L73 E;  4NBB D;  3VCA A;  2XRX A;  3VCP A;  4QUQ A;  4QDC A;  3GOB A;  2NUK A;  1VCK A;  3DQY A;  1UUV A;  1G8K B;  5HL4 A;  2DE7 D;  1SQP E;  3EN1 A;  4QCK A;  4OGQ D;  2YIU C;  1SJG A;  3H1K E;  2XSO A;  2HMK A;  4QDF B;  4AIV A;  2CKF A;  1KYO E;  2FYN C;  2NVF A;  3GL2 A;  1SQB E;  2FYU E;  1JM1 A;  3H1L E;  1PP9 E;  2HML A;  4PD4 E;  3L70 E;  3EQQ A;  2D2C D;  4P1B H;  4QDF A;  5KKZ C;  3AZC A;  4HM3 A;  4QUR A;  1PPJ E;  1SQX E;  1VM9 A;  5BOK A;  2ZT9 D;  3TGU E;  2NVG A;  4HM6 A;  2GBW A;  1NYK A;  2QJP C;  3GKE A;  4NBH D;  1G8J B;  2QJK C;  3C0D A;  2B1X A;  2DE5 D;  4NBD D;  2E76 D;  1ULJ A;  3CX5 E;  1SQV E;  3H1J E;  2E75 D;  3GZY A;  3L71 E;  2JZA A;  4QUP A;  4NB8 D;  2E4P A;  2E74 D;  3GTS A;  4HM5 A;  2NWF A;  3VMG D;  1BCC E;  2NUM A;  4HM2 A;  2YFJ A;  3VMH D;  5CXM A;  4H13 D;  4NBG D;  2IBZ E;  5KLI C;  2BMR A;  2HMN A;  2XSH A;  3GZX A;  2A06 E;  1L0N E;  3D89 A;  2DE6 D;  1ZRT E;  2GBX A;  4H44 D;  3H1H E;  2B24 A;  2YVJ B;  1NTM E;  2HMM A;  3CWB E;  2XR8 A;  4NBE D;  2ZYL A;  3GTE A;  4HKV A;  5AEW A;  2I7F A;  4QDD A;  3L72 E;  2NVE A;  1O7N A;  1ULI A;  4AAY B;  1VF5 D;  2QJY C;  3L74 E;  1P84 E;  4HM1 A;  1EZV E;  5AEU A;  2HMJ A;  1O7W A;  4NB9 D;  2BCC E;  4P1C H;  3L75 E;  4PV1 D;  3VMI D;  4HJL A;  3GB4 A;  3GL0 A;  1SQQ E;  1FQT A;  1O7G A;  3FOU A;  2YFI A;  1L0L E;  2BMO A;  4HM4 A;  4NBF D;  3CXH E;  4NBA D;  2E4Q A;  1O7H A;  2HMO A;  2QPZ A;  1RFS A;  4U3F E;  4EMJ B;  4HM8 A;  4HM0 A;  1UUW A;  4NBC D;  3N0Q A;  2YFL A;  1NDO A;  5KLV E;  3GCE A;  1RIE A;  3H1I E;  1Q90 C;  1EG9 A;  1WQL A;  1O7M A;  3BCC E;  1O7P A; 
#chains in the Genus database with same CATH topology
 1NU1 E;  4HM7 A;  2BMQ A;  1BE3 E;  2JO6 A;  2Q3W A;  1NTZ E;  4H0L D;  1KB9 E;  1NTK E;  3L73 E;  4NBB D;  3VCA A;  2XRX A;  3VCP A;  4QUQ A;  4QDC A;  3GOB A;  2NUK A;  1VCK A;  3DQY A;  1UUV A;  1G8K B;  5HL4 A;  2DE7 D;  1SQP E;  3EN1 A;  4QCK A;  4OGQ D;  2YIU C;  1SJG A;  3H1K E;  2XSO A;  2HMK A;  4QDF B;  4AIV A;  2CKF A;  1KYO E;  2FYN C;  2NVF A;  3GL2 A;  1SQB E;  2FYU E;  1JM1 A;  3H1L E;  1PP9 E;  2HML A;  4PD4 E;  3L70 E;  3EQQ A;  2D2C D;  4P1B H;  4QDF A;  5KKZ C;  3AZC A;  4HM3 A;  4QUR A;  1PPJ E;  1SQX E;  1VM9 A;  5BOK A;  2ZT9 D;  3TGU E;  2NVG A;  4HM6 A;  2GBW A;  1NYK A;  2QJP C;  3GKE A;  4NBH D;  1G8J B;  2QJK C;  3C0D A;  2B1X A;  2DE5 D;  4NBD D;  2E76 D;  1ULJ A;  3CX5 E;  1SQV E;  3H1J E;  2E75 D;  3GZY A;  3L71 E;  2JZA A;  4QUP A;  4NB8 D;  2E4P A;  2E74 D;  3GTS A;  4HM5 A;  2NWF A;  3VMG D;  1BCC E;  2NUM A;  4HM2 A;  2YFJ A;  3VMH D;  5CXM A;  4H13 D;  4NBG D;  2IBZ E;  5KLI C;  2BMR A;  2HMN A;  2XSH A;  3GZX A;  2A06 E;  1L0N E;  3D89 A;  2DE6 D;  1ZRT E;  2GBX A;  4H44 D;  3H1H E;  2B24 A;  2YVJ B;  1NTM E;  2HMM A;  3CWB E;  2XR8 A;  4NBE D;  2ZYL A;  3GTE A;  4HKV A;  5AEW A;  2I7F A;  4QDD A;  3L72 E;  2NVE A;  1O7N A;  1ULI A;  4AAY B;  1VF5 D;  2QJY C;  3L74 E;  1P84 E;  4HM1 A;  1EZV E;  5AEU A;  2HMJ A;  1O7W A;  4NB9 D;  2BCC E;  4P1C H;  3L75 E;  4PV1 D;  3VMI D;  4HJL A;  3GB4 A;  3GL0 A;  1SQQ E;  1FQT A;  1O7G A;  3FOU A;  2YFI A;  1L0L E;  2BMO A;  4HM4 A;  4NBF D;  3CXH E;  4NBA D;  2E4Q A;  1O7H A;  2HMO A;  2QPZ A;  1RFS A;  4U3F E;  4EMJ B;  4HM8 A;  4HM0 A;  1UUW A;  4NBC D;  3N0Q A;  2YFL A;  1NDO A;  5KLV E;  3GCE A;  1RIE A;  3H1I E;  1Q90 C;  1EG9 A;  1WQL A;  1O7M A;  3BCC E;  1O7P A; 
#chains in the Genus database with same CATH homology
 1NU1 E;  4HM7 A;  2BMQ A;  1BE3 E;  2JO6 A;  2Q3W A;  1NTZ E;  4H0L D;  1KB9 E;  1NTK E;  3L73 E;  4NBB D;  3VCA A;  2XRX A;  3VCP A;  4QUQ A;  4QDC A;  3GOB A;  2NUK A;  1VCK A;  3DQY A;  1UUV A;  1G8K B;  5HL4 A;  2DE7 D;  1SQP E;  3EN1 A;  4QCK A;  4OGQ D;  2YIU C;  1SJG A;  3H1K E;  2XSO A;  2HMK A;  4QDF B;  4AIV A;  2CKF A;  1KYO E;  2FYN C;  2NVF A;  3GL2 A;  1SQB E;  2FYU E;  1JM1 A;  3H1L E;  1PP9 E;  2HML A;  4PD4 E;  3L70 E;  3EQQ A;  2D2C D;  4P1B H;  4QDF A;  5KKZ C;  3AZC A;  4HM3 A;  4QUR A;  1PPJ E;  1SQX E;  1VM9 A;  5BOK A;  2ZT9 D;  3TGU E;  2NVG A;  4HM6 A;  2GBW A;  1NYK A;  2QJP C;  3GKE A;  4NBH D;  1G8J B;  2QJK C;  3C0D A;  2B1X A;  2DE5 D;  4NBD D;  2E76 D;  1ULJ A;  3CX5 E;  1SQV E;  3H1J E;  2E75 D;  3GZY A;  3L71 E;  2JZA A;  4QUP A;  4NB8 D;  2E4P A;  2E74 D;  3GTS A;  4HM5 A;  2NWF A;  3VMG D;  1BCC E;  2NUM A;  4HM2 A;  2YFJ A;  3VMH D;  5CXM A;  4H13 D;  4NBG D;  2IBZ E;  5KLI C;  2BMR A;  2HMN A;  2XSH A;  3GZX A;  2A06 E;  1L0N E;  3D89 A;  2DE6 D;  1ZRT E;  2GBX A;  4H44 D;  3H1H E;  2B24 A;  2YVJ B;  1NTM E;  2HMM A;  3CWB E;  2XR8 A;  4NBE D;  2ZYL A;  3GTE A;  4HKV A;  5AEW A;  2I7F A;  4QDD A;  3L72 E;  2NVE A;  1O7N A;  1ULI A;  4AAY B;  1VF5 D;  2QJY C;  3L74 E;  1P84 E;  4HM1 A;  1EZV E;  5AEU A;  2HMJ A;  1O7W A;  4NB9 D;  2BCC E;  4P1C H;  3L75 E;  4PV1 D;  3VMI D;  4HJL A;  3GB4 A;  3GL0 A;  1SQQ E;  1FQT A;  1O7G A;  3FOU A;  2YFI A;  1L0L E;  2BMO A;  4HM4 A;  4NBF D;  3CXH E;  4NBA D;  2E4Q A;  1O7H A;  2HMO A;  2QPZ A;  1RFS A;  4U3F E;  4EMJ B;  4HM8 A;  4HM0 A;  1UUW A;  4NBC D;  3N0Q A;  2YFL A;  1NDO A;  5KLV E;  3GCE A;  1RIE A;  3H1I E;  1Q90 C;  1EG9 A;  1WQL A;  1O7M A;  3BCC E;  1O7P A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

Application loaded.