2E4QA

Crystal structure of bpha3 (reduced form)
Total Genus 19

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
19
sequence length
108
structure length
108
Chain Sequence
TFTKACSVDEVPPGEALQVSHDAQKVAIFNVDGEFFATQDQCTHGEWSLSEGGYLDGDVVECSLHMGKFCVRTGKVKSPPPCEPLKVYPIRIEGRDVLVDFSRAALHA

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
S1 (4-8)3H1 (9-11)S3 (25-32)EMPTYTII1 (13-16)TI4 (101-104)TII'1 (22-25)S4 (35-40)TIV2 (43-46)TIV3 (44-47)TIV9 (80-83)TI1 (49-52)S6 (60-62)TIV4 (51-54)S5 (55-57)TIV5 (56-59)S7 (69-71)TIV7 (71-74)TIV6 (63-66)TI2 (64-67)TI3 (72-75)TIV8 (79-82)TIV11 (102-105)S10 (97-100)S9 (91-94)TIV10 (93-96)S2 (16-22)TIV1 (31-34)S8 (77-79)Updating...
connected with : NaN
molecule tags Electron transport
source organism Pseudomonas sp.
publication title Molecular Mechanism of the Redox-dependent Interaction between NADH-dependent Ferredoxin Reductase and Rieske-type [2Fe-2S] Ferredoxin
pubmed doi rcsb
molecule keywords Biphenyl dioxygenase ferredoxin subunit
total genus 19
structure length 108
sequence length 108
chains with identical sequence C
ec nomenclature
pdb deposition date 2006-12-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00355 Rieske Rieske [2Fe-2S] domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 2e4qA00
1WQLA 1P84E 1EG9A 4HJLA 2HMJA 3GZXA 4EMJB 3EN1A 2IBZE 1VM9A 1SQBE 4H13D 2NVFA 3GL2A 2I7FA 5BOKA 2BMRA 2NVGA 1ULIA 3H1IE 1O7WA 3C0DA 4U3FE 4HM7A 4NBED 1NU1E 1O7MA 3L71E 1KB9E 2HMKA 3VCAA 2DE6D 1NTME 5KKZC 2QJYC 2BMQA 4NBAD 3L73E 4HM3A 2JO6A 2GBWA 3CWBE 1VCKA 2CKFA 3EQQA 4NB8D 2HMOA 1L0LE 1SQQE 4QUPA 2FYNC 3H1LE 2BMOA 3GKEA 1O7GA 3L75E 1KYOE 2E4QA 4H44D 2Q3WA 4NBHD 5HL4A 4QDFB 2A06E 1FQTA 1BCCE 2QJPC 1RIEA 2JZAA 3GZYA 3L70E 4NBCD 3GCEA 2YFLA 4NBBD 1NYKA 2E76D 2XSHA 4P1CH 2QPZA 3H1KE 2E4PA 1NDOA 2YFIA 1BE3E 2YVJB 3GTEA 4HM4A 1Q90C 1G8KB 2FYUE 3AZCA 4OGQD 2NWFA 1SJGA 1JM1A 3TGUE 2NVEA 1UUWA 1EZVE 2E74D 1PP9E 2NUMA 4QURA 2QJKC 2XSOA 4QCKA 3VMGD 4QDDA 2DE5D 4PD4E 4AIVA 2XRXA 1VF5D 2NUKA 4NBDD 4QDFA 3CX5E 1NTKE 4H0LD 1PPJE 3VMID 1O7PA 4NBFD 3H1JE 4HM5A 1L0NE 1RFSA 2GBXA 4NB9D 3CXHE 3FOUA 4QDCA 1O7HA 2BCCE 4HM8A 3DQYA 5AEWA 1ZRTE 2HMLA 1O7NA 3D89A 3GL0A 2YIUC 3GTSA 3H1HE 3L74E 4AAYB 5AEUA 2DE7D 1SQXE 4HM1A 3VMHD 3VCPA 2XR8A 1SQPE 5KLVE 1SQVE 1UUVA 1ULJA 2YFJA 4P1BH 4PV1D 4HM6A 2B24A 2B1XA 1NTZE 2E75D 3L72E 3BCCE 3GOBA 5CXMA 2HMNA 3GB4A 2D2CD 2HMMA 4QUQA 2ZYLA 2ZT9D 4HKVA 5KLIC 4HM0A 4NBGD 1G8JB 3N0QA 4HM2A
chains in the Genus database with same CATH superfamily
1WQLA 1P84E 1EG9A 4HJLA 2HMJA 3GZXA 4EMJB 3EN1A 2IBZE 1VM9A 1SQBE 4H13D 2NVFA 3GL2A 2I7FA 5BOKA 2BMRA 2NVGA 1ULIA 3H1IE 1O7WA 3C0DA 4U3FE 4HM7A 4NBED 1NU1E 1O7MA 3L71E 1KB9E 2HMKA 3VCAA 2DE6D 1NTME 5KKZC 2QJYC 2BMQA 4NBAD 3L73E 4HM3A 2JO6A 2GBWA 3CWBE 1VCKA 2CKFA 3EQQA 4NB8D 2HMOA 1L0LE 1SQQE 4QUPA 2FYNC 3H1LE 2BMOA 3GKEA 1O7GA 3L75E 1KYOE 2E4QA 4H44D 2Q3WA 4NBHD 5HL4A 4QDFB 2A06E 1FQTA 1BCCE 2QJPC 1RIEA 2JZAA 3GZYA 3L70E 4NBCD 3GCEA 2YFLA 4NBBD 1NYKA 2E76D 2XSHA 4P1CH 2QPZA 3H1KE 2E4PA 1NDOA 2YFIA 1BE3E 2YVJB 3GTEA 4HM4A 1Q90C 1G8KB 2FYUE 3AZCA 4OGQD 2NWFA 1SJGA 1JM1A 3TGUE 2NVEA 1UUWA 1EZVE 2E74D 1PP9E 2NUMA 4QURA 2QJKC 2XSOA 4QCKA 3VMGD 4QDDA 2DE5D 4PD4E 4AIVA 2XRXA 1VF5D 2NUKA 4NBDD 4QDFA 3CX5E 1NTKE 4H0LD 1PPJE 3VMID 1O7PA 4NBFD 3H1JE 4HM5A 1L0NE 1RFSA 2GBXA 4NB9D 3CXHE 3FOUA 4QDCA 1O7HA 2BCCE 4HM8A 3DQYA 5AEWA 1ZRTE 2HMLA 1O7NA 3D89A 3GL0A 2YIUC 3GTSA 3H1HE 3L74E 4AAYB 5AEUA 2DE7D 1SQXE 4HM1A 3VMHD 3VCPA 2XR8A 1SQPE 5KLVE 1SQVE 1UUVA 1ULJA 2YFJA 4P1BH 4PV1D 4HM6A 2B24A 2B1XA 1NTZE 2E75D 3L72E 3BCCE 3GOBA 5CXMA 2HMNA 3GB4A 2D2CD 2HMMA 4QUQA 2ZYLA 2ZT9D 4HKVA 5KLIC 4HM0A 4NBGD 1G8JB 3N0QA 4HM2A
chains in the Genus database with same CATH topology
1WQLA 1P84E 1EG9A 4HJLA 2HMJA 3GZXA 4EMJB 3EN1A 2IBZE 1VM9A 1SQBE 4H13D 2NVFA 3GL2A 2I7FA 5BOKA 2BMRA 2NVGA 1ULIA 3H1IE 1O7WA 3C0DA 4U3FE 4HM7A 4NBED 1NU1E 1O7MA 3L71E 1KB9E 2HMKA 3VCAA 2DE6D 1NTME 5KKZC 2QJYC 2BMQA 4NBAD 3L73E 4HM3A 2JO6A 2GBWA 3CWBE 1VCKA 2CKFA 3EQQA 4NB8D 2HMOA 1L0LE 1SQQE 4QUPA 2FYNC 3H1LE 2BMOA 3GKEA 1O7GA 3L75E 1KYOE 2E4QA 4H44D 2Q3WA 4NBHD 5HL4A 4QDFB 2A06E 1FQTA 1BCCE 2QJPC 1RIEA 2JZAA 3GZYA 3L70E 4NBCD 3GCEA 2YFLA 4NBBD 1NYKA 2E76D 2XSHA 4P1CH 2QPZA 3H1KE 2E4PA 1NDOA 2YFIA 1BE3E 2YVJB 3GTEA 4HM4A 1Q90C 1G8KB 2FYUE 3AZCA 4OGQD 2NWFA 1SJGA 1JM1A 3TGUE 2NVEA 1UUWA 1EZVE 2E74D 1PP9E 2NUMA 4QURA 2QJKC 2XSOA 4QCKA 3VMGD 4QDDA 2DE5D 4PD4E 4AIVA 2XRXA 1VF5D 2NUKA 4NBDD 4QDFA 3CX5E 1NTKE 4H0LD 1PPJE 3VMID 1O7PA 4NBFD 3H1JE 4HM5A 1L0NE 1RFSA 2GBXA 4NB9D 3CXHE 3FOUA 4QDCA 1O7HA 2BCCE 4HM8A 3DQYA 5AEWA 1ZRTE 2HMLA 1O7NA 3D89A 3GL0A 2YIUC 3GTSA 3H1HE 3L74E 4AAYB 5AEUA 2DE7D 1SQXE 4HM1A 3VMHD 3VCPA 2XR8A 1SQPE 5KLVE 1SQVE 1UUVA 1ULJA 2YFJA 4P1BH 4PV1D 4HM6A 2B24A 2B1XA 1NTZE 2E75D 3L72E 3BCCE 3GOBA 5CXMA 2HMNA 3GB4A 2D2CD 2HMMA 4QUQA 2ZYLA 2ZT9D 4HKVA 5KLIC 4HM0A 4NBGD 1G8JB 3N0QA 4HM2A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1WQL A;  1P84 E;  1EG9 A;  4HJL A;  2HMJ A;  3GZX A;  4EMJ B;  3EN1 A;  2IBZ E;  1VM9 A;  1SQB E;  4H13 D;  2NVF A;  3GL2 A;  2I7F A;  5BOK A;  2BMR A;  2NVG A;  1ULI A;  3H1I E;  1O7W A;  3C0D A;  4U3F E;  4HM7 A;  4NBE D;  1NU1 E;  1O7M A;  3L71 E;  1KB9 E;  2HMK A;  3VCA A;  2DE6 D;  1NTM E;  5KKZ C;  2QJY C;  2BMQ A;  4NBA D;  3L73 E;  4HM3 A;  2JO6 A;  2GBW A;  3CWB E;  1VCK A;  2CKF A;  3EQQ A;  4NB8 D;  2HMO A;  1L0L E;  1SQQ E;  4QUP A;  2FYN C;  3H1L E;  2BMO A;  3GKE A;  1O7G A;  3L75 E;  1KYO E;  2E4Q A;  4H44 D;  2Q3W A;  4NBH D;  5HL4 A;  4QDF B;  2A06 E;  1FQT A;  1BCC E;  2QJP C;  1RIE A;  2JZA A;  3GZY A;  3L70 E;  4NBC D;  3GCE A;  2YFL A;  4NBB D;  1NYK A;  2E76 D;  2XSH A;  4P1C H;  2QPZ A;  3H1K E;  2E4P A;  1NDO A;  2YFI A;  1BE3 E;  2YVJ B;  3GTE A;  4HM4 A;  1Q90 C;  1G8K B;  2FYU E;  3AZC A;  4OGQ D;  2NWF A;  1SJG A;  1JM1 A;  3TGU E;  2NVE A;  1UUW A;  1EZV E;  2E74 D;  1PP9 E;  2NUM A;  4QUR A;  2QJK C;  2XSO A;  4QCK A;  3VMG D;  4QDD A;  2DE5 D;  4PD4 E;  4AIV A;  2XRX A;  1VF5 D;  2NUK A;  4NBD D;  4QDF A;  3CX5 E;  1NTK E;  4H0L D;  1PPJ E;  3VMI D;  1O7P A;  4NBF D;  3H1J E;  4HM5 A;  1L0N E;  1RFS A;  2GBX A;  4NB9 D;  3CXH E;  3FOU A;  4QDC A;  1O7H A;  2BCC E;  4HM8 A;  3DQY A;  5AEW A;  1ZRT E;  2HML A;  1O7N A;  3D89 A;  3GL0 A;  2YIU C;  3GTS A;  3H1H E;  3L74 E;  4AAY B;  5AEU A;  2DE7 D;  1SQX E;  4HM1 A;  3VMH D;  3VCP A;  2XR8 A;  1SQP E;  5KLV E;  1SQV E;  1UUV A;  1ULJ A;  2YFJ A;  4P1B H;  4PV1 D;  4HM6 A;  2B24 A;  2B1X A;  1NTZ E;  2E75 D;  3L72 E;  3BCC E;  3GOB A;  5CXM A;  2HMN A;  3GB4 A;  2D2C D;  2HMM A;  4QUQ A;  2ZYL A;  2ZT9 D;  4HKV A;  5KLI C;  4HM0 A;  4NBG D;  1G8J B;  3N0Q A;  4HM2 A; 
#chains in the Genus database with same CATH topology
 1WQL A;  1P84 E;  1EG9 A;  4HJL A;  2HMJ A;  3GZX A;  4EMJ B;  3EN1 A;  2IBZ E;  1VM9 A;  1SQB E;  4H13 D;  2NVF A;  3GL2 A;  2I7F A;  5BOK A;  2BMR A;  2NVG A;  1ULI A;  3H1I E;  1O7W A;  3C0D A;  4U3F E;  4HM7 A;  4NBE D;  1NU1 E;  1O7M A;  3L71 E;  1KB9 E;  2HMK A;  3VCA A;  2DE6 D;  1NTM E;  5KKZ C;  2QJY C;  2BMQ A;  4NBA D;  3L73 E;  4HM3 A;  2JO6 A;  2GBW A;  3CWB E;  1VCK A;  2CKF A;  3EQQ A;  4NB8 D;  2HMO A;  1L0L E;  1SQQ E;  4QUP A;  2FYN C;  3H1L E;  2BMO A;  3GKE A;  1O7G A;  3L75 E;  1KYO E;  2E4Q A;  4H44 D;  2Q3W A;  4NBH D;  5HL4 A;  4QDF B;  2A06 E;  1FQT A;  1BCC E;  2QJP C;  1RIE A;  2JZA A;  3GZY A;  3L70 E;  4NBC D;  3GCE A;  2YFL A;  4NBB D;  1NYK A;  2E76 D;  2XSH A;  4P1C H;  2QPZ A;  3H1K E;  2E4P A;  1NDO A;  2YFI A;  1BE3 E;  2YVJ B;  3GTE A;  4HM4 A;  1Q90 C;  1G8K B;  2FYU E;  3AZC A;  4OGQ D;  2NWF A;  1SJG A;  1JM1 A;  3TGU E;  2NVE A;  1UUW A;  1EZV E;  2E74 D;  1PP9 E;  2NUM A;  4QUR A;  2QJK C;  2XSO A;  4QCK A;  3VMG D;  4QDD A;  2DE5 D;  4PD4 E;  4AIV A;  2XRX A;  1VF5 D;  2NUK A;  4NBD D;  4QDF A;  3CX5 E;  1NTK E;  4H0L D;  1PPJ E;  3VMI D;  1O7P A;  4NBF D;  3H1J E;  4HM5 A;  1L0N E;  1RFS A;  2GBX A;  4NB9 D;  3CXH E;  3FOU A;  4QDC A;  1O7H A;  2BCC E;  4HM8 A;  3DQY A;  5AEW A;  1ZRT E;  2HML A;  1O7N A;  3D89 A;  3GL0 A;  2YIU C;  3GTS A;  3H1H E;  3L74 E;  4AAY B;  5AEU A;  2DE7 D;  1SQX E;  4HM1 A;  3VMH D;  3VCP A;  2XR8 A;  1SQP E;  5KLV E;  1SQV E;  1UUV A;  1ULJ A;  2YFJ A;  4P1B H;  4PV1 D;  4HM6 A;  2B24 A;  2B1X A;  1NTZ E;  2E75 D;  3L72 E;  3BCC E;  3GOB A;  5CXM A;  2HMN A;  3GB4 A;  2D2C D;  2HMM A;  4QUQ A;  2ZYL A;  2ZT9 D;  4HKV A;  5KLI C;  4HM0 A;  4NBG D;  1G8J B;  3N0Q A;  4HM2 A; 
#chains in the Genus database with same CATH homology
 1WQL A;  1P84 E;  1EG9 A;  4HJL A;  2HMJ A;  3GZX A;  4EMJ B;  3EN1 A;  2IBZ E;  1VM9 A;  1SQB E;  4H13 D;  2NVF A;  3GL2 A;  2I7F A;  5BOK A;  2BMR A;  2NVG A;  1ULI A;  3H1I E;  1O7W A;  3C0D A;  4U3F E;  4HM7 A;  4NBE D;  1NU1 E;  1O7M A;  3L71 E;  1KB9 E;  2HMK A;  3VCA A;  2DE6 D;  1NTM E;  5KKZ C;  2QJY C;  2BMQ A;  4NBA D;  3L73 E;  4HM3 A;  2JO6 A;  2GBW A;  3CWB E;  1VCK A;  2CKF A;  3EQQ A;  4NB8 D;  2HMO A;  1L0L E;  1SQQ E;  4QUP A;  2FYN C;  3H1L E;  2BMO A;  3GKE A;  1O7G A;  3L75 E;  1KYO E;  2E4Q A;  4H44 D;  2Q3W A;  4NBH D;  5HL4 A;  4QDF B;  2A06 E;  1FQT A;  1BCC E;  2QJP C;  1RIE A;  2JZA A;  3GZY A;  3L70 E;  4NBC D;  3GCE A;  2YFL A;  4NBB D;  1NYK A;  2E76 D;  2XSH A;  4P1C H;  2QPZ A;  3H1K E;  2E4P A;  1NDO A;  2YFI A;  1BE3 E;  2YVJ B;  3GTE A;  4HM4 A;  1Q90 C;  1G8K B;  2FYU E;  3AZC A;  4OGQ D;  2NWF A;  1SJG A;  1JM1 A;  3TGU E;  2NVE A;  1UUW A;  1EZV E;  2E74 D;  1PP9 E;  2NUM A;  4QUR A;  2QJK C;  2XSO A;  4QCK A;  3VMG D;  4QDD A;  2DE5 D;  4PD4 E;  4AIV A;  2XRX A;  1VF5 D;  2NUK A;  4NBD D;  4QDF A;  3CX5 E;  1NTK E;  4H0L D;  1PPJ E;  3VMI D;  1O7P A;  4NBF D;  3H1J E;  4HM5 A;  1L0N E;  1RFS A;  2GBX A;  4NB9 D;  3CXH E;  3FOU A;  4QDC A;  1O7H A;  2BCC E;  4HM8 A;  3DQY A;  5AEW A;  1ZRT E;  2HML A;  1O7N A;  3D89 A;  3GL0 A;  2YIU C;  3GTS A;  3H1H E;  3L74 E;  4AAY B;  5AEU A;  2DE7 D;  1SQX E;  4HM1 A;  3VMH D;  3VCP A;  2XR8 A;  1SQP E;  5KLV E;  1SQV E;  1UUV A;  1ULJ A;  2YFJ A;  4P1B H;  4PV1 D;  4HM6 A;  2B24 A;  2B1X A;  1NTZ E;  2E75 D;  3L72 E;  3BCC E;  3GOB A;  5CXM A;  2HMN A;  3GB4 A;  2D2C D;  2HMM A;  4QUQ A;  2ZYL A;  2ZT9 D;  4HKV A;  5KLI C;  4HM0 A;  4NBG D;  1G8J B;  3N0Q A;  4HM2 A; 
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