2I7FA

Sphingomonas yanoikuyae b1 ferredoxin
Total Genus 18

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
18
sequence length
102
structure length
102
Chain Sequence
NKLRLCQVASVKDGEPVAVYQEKMPALAVYNVDGEVFVTDNLCTHGNAMLTDGYQDGTIIECPFHGGSFDIATGAAKAFPCQIPIKTYPVTIEDGWVCIDQP

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
S1 (4-9)S10 (92-95)3H1 (10-12)S3 (29-34)TII1 (14-17)EMPTYS2 (19-21)TI1 (23-26)S4 (37-42)TIV1 (33-36)TI2 (45-48)TVIa1 (80-83)3H2 (52-54)S6 (61-63)S5 (56-58)TII'1 (58-61)S7 (70-72)TI'2 (66-69)S8 (78-80)TI3 (72-75)TIV3 (94-97)S11 (98-102)Updating...
connected with : NaN
molecule tags Oxidoreductase
source organism Sphingobium yanoikuyae
publication title Structural investigations of the ferredoxin and terminal oxygenase components of the biphenyl 2,3-dioxygenase from Sphingobium yanoikuyae B1.
pubmed doi rcsb
molecule keywords Ferredoxin component of dioxygenase
total genus 18
structure length 102
sequence length 102
chains with identical sequence B
ec nomenclature
pdb deposition date 2006-08-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00355 Rieske Rieske [2Fe-2S] domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 2i7fA00
2NVGA 1O7HA 1NDOA 3CX5E 3H1JE 3L73E 3EN1A 3GKEA 3GOBA 4HM6A 4U3FE 3D89A 4HM1A 2D2CD 5KLIC 1BE3E 3VCAA 3H1IE 3H1LE 1ULJA 3FOUA 4EMJB 2IBZE 2HMOA 2XRXA 1PP9E 4NBCD 1RFSA 1UUWA 3H1HE 3EQQA 2NWFA 1SJGA 2E76D 2ZYLA 4AAYB 4NBED 1O7WA 2B1XA 2GBWA 1SQBE 1BCCE 2GBXA 2BCCE 3DQYA 1NTKE 1NU1E 1VM9A 3L72E 4PV1D 2XSHA 4NBFD 2QJPC 3GL0A 1KB9E 2NUMA 3CXHE 2XSOA 2HMMA 1L0LE 2YFIA 3BCCE 1O7MA 5HL4A 2JO6A 2I7FA 3GCEA 2BMRA 5KKZC 1L0NE 4HJLA 3VMID 3VCPA 2FYUE 3GTSA 2Q3WA 4H44D 1WQLA 4QDCA 4HKVA 1P84E 2CKFA 4NBBD 1SQQE 3C0DA 2E75D 4NB9D 1NTME 4QUQA 5KLVE 4HM3A 2QPZA 2DE6D 3TGUE 2DE5D 3L71E 3VMHD 1G8KB 2HMLA 4QURA 3L70E 2NVEA 1FQTA 3GZXA 5BOKA 1SQXE 4NBHD 4HM5A 1PPJE 1VCKA 4OGQD 2ZT9D 3GL2A 1NYKA 3H1KE 1EZVE 4PD4E 2NVFA 4P1CH 4QDFB 3N0QA 2B24A 2DE7D 2E4PA 2E74D 1NTZE 3AZCA 5AEWA 3VMGD 1ZRTE 4QCKA 1SQVE 2A06E 2YFLA 2HMJA 2YVJB 3GB4A 3GZYA 2NUKA 1UUVA 3CWBE 4NB8D 4NBDD 4H0LD 4H13D 1RIEA 3L74E 2FYNC 2YFJA 2E4QA 1O7NA 4QUPA 1KYOE 1O7GA 1VF5D 2YIUC 1ULIA 5AEUA 2BMOA 1JM1A 1O7PA 4AIVA 3GTEA 4HM4A 4NBAD 4P1BH 1G8JB 3L75E 4QDFA 2QJYC 1SQPE 2HMKA 2XR8A 4HM2A 4HM0A 2BMQA 1Q90C 4NBGD 4HM7A 4QDDA 1EG9A 2HMNA 4HM8A 2QJKC 5CXMA 2JZAA
chains in the Genus database with same CATH superfamily
2NVGA 1O7HA 1NDOA 3CX5E 3H1JE 3L73E 3EN1A 3GKEA 3GOBA 4HM6A 4U3FE 3D89A 4HM1A 2D2CD 5KLIC 1BE3E 3VCAA 3H1IE 3H1LE 1ULJA 3FOUA 4EMJB 2IBZE 2HMOA 2XRXA 1PP9E 4NBCD 1RFSA 1UUWA 3H1HE 3EQQA 2NWFA 1SJGA 2E76D 2ZYLA 4AAYB 4NBED 1O7WA 2B1XA 2GBWA 1SQBE 1BCCE 2GBXA 2BCCE 3DQYA 1NTKE 1NU1E 1VM9A 3L72E 4PV1D 2XSHA 4NBFD 2QJPC 3GL0A 1KB9E 2NUMA 3CXHE 2XSOA 2HMMA 1L0LE 2YFIA 3BCCE 1O7MA 5HL4A 2JO6A 2I7FA 3GCEA 2BMRA 5KKZC 1L0NE 4HJLA 3VMID 3VCPA 2FYUE 3GTSA 2Q3WA 4H44D 1WQLA 4QDCA 4HKVA 1P84E 2CKFA 4NBBD 1SQQE 3C0DA 2E75D 4NB9D 1NTME 4QUQA 5KLVE 4HM3A 2QPZA 2DE6D 3TGUE 2DE5D 3L71E 3VMHD 1G8KB 2HMLA 4QURA 3L70E 2NVEA 1FQTA 3GZXA 5BOKA 1SQXE 4NBHD 4HM5A 1PPJE 1VCKA 4OGQD 2ZT9D 3GL2A 1NYKA 3H1KE 1EZVE 4PD4E 2NVFA 4P1CH 4QDFB 3N0QA 2B24A 2DE7D 2E4PA 2E74D 1NTZE 3AZCA 5AEWA 3VMGD 1ZRTE 4QCKA 1SQVE 2A06E 2YFLA 2HMJA 2YVJB 3GB4A 3GZYA 2NUKA 1UUVA 3CWBE 4NB8D 4NBDD 4H0LD 4H13D 1RIEA 3L74E 2FYNC 2YFJA 2E4QA 1O7NA 4QUPA 1KYOE 1O7GA 1VF5D 2YIUC 1ULIA 5AEUA 2BMOA 1JM1A 1O7PA 4AIVA 3GTEA 4HM4A 4NBAD 4P1BH 1G8JB 3L75E 4QDFA 2QJYC 1SQPE 2HMKA 2XR8A 4HM2A 4HM0A 2BMQA 1Q90C 4NBGD 4HM7A 4QDDA 1EG9A 2HMNA 4HM8A 2QJKC 5CXMA 2JZAA
chains in the Genus database with same CATH topology
2NVGA 1O7HA 1NDOA 3CX5E 3H1JE 3L73E 3EN1A 3GKEA 3GOBA 4HM6A 4U3FE 3D89A 4HM1A 2D2CD 5KLIC 1BE3E 3VCAA 3H1IE 3H1LE 1ULJA 3FOUA 4EMJB 2IBZE 2HMOA 2XRXA 1PP9E 4NBCD 1RFSA 1UUWA 3H1HE 3EQQA 2NWFA 1SJGA 2E76D 2ZYLA 4AAYB 4NBED 1O7WA 2B1XA 2GBWA 1SQBE 1BCCE 2GBXA 2BCCE 3DQYA 1NTKE 1NU1E 1VM9A 3L72E 4PV1D 2XSHA 4NBFD 2QJPC 3GL0A 1KB9E 2NUMA 3CXHE 2XSOA 2HMMA 1L0LE 2YFIA 3BCCE 1O7MA 5HL4A 2JO6A 2I7FA 3GCEA 2BMRA 5KKZC 1L0NE 4HJLA 3VMID 3VCPA 2FYUE 3GTSA 2Q3WA 4H44D 1WQLA 4QDCA 4HKVA 1P84E 2CKFA 4NBBD 1SQQE 3C0DA 2E75D 4NB9D 1NTME 4QUQA 5KLVE 4HM3A 2QPZA 2DE6D 3TGUE 2DE5D 3L71E 3VMHD 1G8KB 2HMLA 4QURA 3L70E 2NVEA 1FQTA 3GZXA 5BOKA 1SQXE 4NBHD 4HM5A 1PPJE 1VCKA 4OGQD 2ZT9D 3GL2A 1NYKA 3H1KE 1EZVE 4PD4E 2NVFA 4P1CH 4QDFB 3N0QA 2B24A 2DE7D 2E4PA 2E74D 1NTZE 3AZCA 5AEWA 3VMGD 1ZRTE 4QCKA 1SQVE 2A06E 2YFLA 2HMJA 2YVJB 3GB4A 3GZYA 2NUKA 1UUVA 3CWBE 4NB8D 4NBDD 4H0LD 4H13D 1RIEA 3L74E 2FYNC 2YFJA 2E4QA 1O7NA 4QUPA 1KYOE 1O7GA 1VF5D 2YIUC 1ULIA 5AEUA 2BMOA 1JM1A 1O7PA 4AIVA 3GTEA 4HM4A 4NBAD 4P1BH 1G8JB 3L75E 4QDFA 2QJYC 1SQPE 2HMKA 2XR8A 4HM2A 4HM0A 2BMQA 1Q90C 4NBGD 4HM7A 4QDDA 1EG9A 2HMNA 4HM8A 2QJKC 5CXMA 2JZAA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2NVG A;  1O7H A;  1NDO A;  3CX5 E;  3H1J E;  3L73 E;  3EN1 A;  3GKE A;  3GOB A;  4HM6 A;  4U3F E;  3D89 A;  4HM1 A;  2D2C D;  5KLI C;  1BE3 E;  3VCA A;  3H1I E;  3H1L E;  1ULJ A;  3FOU A;  4EMJ B;  2IBZ E;  2HMO A;  2XRX A;  1PP9 E;  4NBC D;  1RFS A;  1UUW A;  3H1H E;  3EQQ A;  2NWF A;  1SJG A;  2E76 D;  2ZYL A;  4AAY B;  4NBE D;  1O7W A;  2B1X A;  2GBW A;  1SQB E;  1BCC E;  2GBX A;  2BCC E;  3DQY A;  1NTK E;  1NU1 E;  1VM9 A;  3L72 E;  4PV1 D;  2XSH A;  4NBF D;  2QJP C;  3GL0 A;  1KB9 E;  2NUM A;  3CXH E;  2XSO A;  2HMM A;  1L0L E;  2YFI A;  3BCC E;  1O7M A;  5HL4 A;  2JO6 A;  2I7F A;  3GCE A;  2BMR A;  5KKZ C;  1L0N E;  4HJL A;  3VMI D;  3VCP A;  2FYU E;  3GTS A;  2Q3W A;  4H44 D;  1WQL A;  4QDC A;  4HKV A;  1P84 E;  2CKF A;  4NBB D;  1SQQ E;  3C0D A;  2E75 D;  4NB9 D;  1NTM E;  4QUQ A;  5KLV E;  4HM3 A;  2QPZ A;  2DE6 D;  3TGU E;  2DE5 D;  3L71 E;  3VMH D;  1G8K B;  2HML A;  4QUR A;  3L70 E;  2NVE A;  1FQT A;  3GZX A;  5BOK A;  1SQX E;  4NBH D;  4HM5 A;  1PPJ E;  1VCK A;  4OGQ D;  2ZT9 D;  3GL2 A;  1NYK A;  3H1K E;  1EZV E;  4PD4 E;  2NVF A;  4P1C H;  4QDF B;  3N0Q A;  2B24 A;  2DE7 D;  2E4P A;  2E74 D;  1NTZ E;  3AZC A;  5AEW A;  3VMG D;  1ZRT E;  4QCK A;  1SQV E;  2A06 E;  2YFL A;  2HMJ A;  2YVJ B;  3GB4 A;  3GZY A;  2NUK A;  1UUV A;  3CWB E;  4NB8 D;  4NBD D;  4H0L D;  4H13 D;  1RIE A;  3L74 E;  2FYN C;  2YFJ A;  2E4Q A;  1O7N A;  4QUP A;  1KYO E;  1O7G A;  1VF5 D;  2YIU C;  1ULI A;  5AEU A;  2BMO A;  1JM1 A;  1O7P A;  4AIV A;  3GTE A;  4HM4 A;  4NBA D;  4P1B H;  1G8J B;  3L75 E;  4QDF A;  2QJY C;  1SQP E;  2HMK A;  2XR8 A;  4HM2 A;  4HM0 A;  2BMQ A;  1Q90 C;  4NBG D;  4HM7 A;  4QDD A;  1EG9 A;  2HMN A;  4HM8 A;  2QJK C;  5CXM A;  2JZA A; 
#chains in the Genus database with same CATH topology
 2NVG A;  1O7H A;  1NDO A;  3CX5 E;  3H1J E;  3L73 E;  3EN1 A;  3GKE A;  3GOB A;  4HM6 A;  4U3F E;  3D89 A;  4HM1 A;  2D2C D;  5KLI C;  1BE3 E;  3VCA A;  3H1I E;  3H1L E;  1ULJ A;  3FOU A;  4EMJ B;  2IBZ E;  2HMO A;  2XRX A;  1PP9 E;  4NBC D;  1RFS A;  1UUW A;  3H1H E;  3EQQ A;  2NWF A;  1SJG A;  2E76 D;  2ZYL A;  4AAY B;  4NBE D;  1O7W A;  2B1X A;  2GBW A;  1SQB E;  1BCC E;  2GBX A;  2BCC E;  3DQY A;  1NTK E;  1NU1 E;  1VM9 A;  3L72 E;  4PV1 D;  2XSH A;  4NBF D;  2QJP C;  3GL0 A;  1KB9 E;  2NUM A;  3CXH E;  2XSO A;  2HMM A;  1L0L E;  2YFI A;  3BCC E;  1O7M A;  5HL4 A;  2JO6 A;  2I7F A;  3GCE A;  2BMR A;  5KKZ C;  1L0N E;  4HJL A;  3VMI D;  3VCP A;  2FYU E;  3GTS A;  2Q3W A;  4H44 D;  1WQL A;  4QDC A;  4HKV A;  1P84 E;  2CKF A;  4NBB D;  1SQQ E;  3C0D A;  2E75 D;  4NB9 D;  1NTM E;  4QUQ A;  5KLV E;  4HM3 A;  2QPZ A;  2DE6 D;  3TGU E;  2DE5 D;  3L71 E;  3VMH D;  1G8K B;  2HML A;  4QUR A;  3L70 E;  2NVE A;  1FQT A;  3GZX A;  5BOK A;  1SQX E;  4NBH D;  4HM5 A;  1PPJ E;  1VCK A;  4OGQ D;  2ZT9 D;  3GL2 A;  1NYK A;  3H1K E;  1EZV E;  4PD4 E;  2NVF A;  4P1C H;  4QDF B;  3N0Q A;  2B24 A;  2DE7 D;  2E4P A;  2E74 D;  1NTZ E;  3AZC A;  5AEW A;  3VMG D;  1ZRT E;  4QCK A;  1SQV E;  2A06 E;  2YFL A;  2HMJ A;  2YVJ B;  3GB4 A;  3GZY A;  2NUK A;  1UUV A;  3CWB E;  4NB8 D;  4NBD D;  4H0L D;  4H13 D;  1RIE A;  3L74 E;  2FYN C;  2YFJ A;  2E4Q A;  1O7N A;  4QUP A;  1KYO E;  1O7G A;  1VF5 D;  2YIU C;  1ULI A;  5AEU A;  2BMO A;  1JM1 A;  1O7P A;  4AIV A;  3GTE A;  4HM4 A;  4NBA D;  4P1B H;  1G8J B;  3L75 E;  4QDF A;  2QJY C;  1SQP E;  2HMK A;  2XR8 A;  4HM2 A;  4HM0 A;  2BMQ A;  1Q90 C;  4NBG D;  4HM7 A;  4QDD A;  1EG9 A;  2HMN A;  4HM8 A;  2QJK C;  5CXM A;  2JZA A; 
#chains in the Genus database with same CATH homology
 2NVG A;  1O7H A;  1NDO A;  3CX5 E;  3H1J E;  3L73 E;  3EN1 A;  3GKE A;  3GOB A;  4HM6 A;  4U3F E;  3D89 A;  4HM1 A;  2D2C D;  5KLI C;  1BE3 E;  3VCA A;  3H1I E;  3H1L E;  1ULJ A;  3FOU A;  4EMJ B;  2IBZ E;  2HMO A;  2XRX A;  1PP9 E;  4NBC D;  1RFS A;  1UUW A;  3H1H E;  3EQQ A;  2NWF A;  1SJG A;  2E76 D;  2ZYL A;  4AAY B;  4NBE D;  1O7W A;  2B1X A;  2GBW A;  1SQB E;  1BCC E;  2GBX A;  2BCC E;  3DQY A;  1NTK E;  1NU1 E;  1VM9 A;  3L72 E;  4PV1 D;  2XSH A;  4NBF D;  2QJP C;  3GL0 A;  1KB9 E;  2NUM A;  3CXH E;  2XSO A;  2HMM A;  1L0L E;  2YFI A;  3BCC E;  1O7M A;  5HL4 A;  2JO6 A;  2I7F A;  3GCE A;  2BMR A;  5KKZ C;  1L0N E;  4HJL A;  3VMI D;  3VCP A;  2FYU E;  3GTS A;  2Q3W A;  4H44 D;  1WQL A;  4QDC A;  4HKV A;  1P84 E;  2CKF A;  4NBB D;  1SQQ E;  3C0D A;  2E75 D;  4NB9 D;  1NTM E;  4QUQ A;  5KLV E;  4HM3 A;  2QPZ A;  2DE6 D;  3TGU E;  2DE5 D;  3L71 E;  3VMH D;  1G8K B;  2HML A;  4QUR A;  3L70 E;  2NVE A;  1FQT A;  3GZX A;  5BOK A;  1SQX E;  4NBH D;  4HM5 A;  1PPJ E;  1VCK A;  4OGQ D;  2ZT9 D;  3GL2 A;  1NYK A;  3H1K E;  1EZV E;  4PD4 E;  2NVF A;  4P1C H;  4QDF B;  3N0Q A;  2B24 A;  2DE7 D;  2E4P A;  2E74 D;  1NTZ E;  3AZC A;  5AEW A;  3VMG D;  1ZRT E;  4QCK A;  1SQV E;  2A06 E;  2YFL A;  2HMJ A;  2YVJ B;  3GB4 A;  3GZY A;  2NUK A;  1UUV A;  3CWB E;  4NB8 D;  4NBD D;  4H0L D;  4H13 D;  1RIE A;  3L74 E;  2FYN C;  2YFJ A;  2E4Q A;  1O7N A;  4QUP A;  1KYO E;  1O7G A;  1VF5 D;  2YIU C;  1ULI A;  5AEU A;  2BMO A;  1JM1 A;  1O7P A;  4AIV A;  3GTE A;  4HM4 A;  4NBA D;  4P1B H;  1G8J B;  3L75 E;  4QDF A;  2QJY C;  1SQP E;  2HMK A;  2XR8 A;  4HM2 A;  4HM0 A;  2BMQ A;  1Q90 C;  4NBG D;  4HM7 A;  4QDD A;  1EG9 A;  2HMN A;  4HM8 A;  2QJK C;  5CXM A;  2JZA A; 
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