2NUKA

Soluble domain of the rieske iron-sulfur protein from rhodobacter sphaeroides
Total Genus 36

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
36
sequence length
141
structure length
141
Chain Sequence
LASIFVDVSSVEPGVQLTVKFLGKPIFIRRRTEADIELGRSVQLGQLVDTNARNANIDAGAEATDQNRTLDEAGEWLVMWGVCTHLGCVPIGGVSGDFGGWFCPCHGSHYDSAGRIRKGPAPENLPIPLAKFIDETTIQLG
2040608010012014014012010080604020
05101520253035Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYO1 (134-151)S1 (50-53)TII1 (58-61)TIV1 (66-69)S2 (61-67)TI1 (54-57)TIV2 (129-132)3H2 (111-113)S4 (122-126)AH1 (79-86)TI3 (104-107)3H1 (90-92)TI2 (100-103)TVIII1 (93-96)TI4 (117-120)S5 (137-141)TIV3 (130-133)S3 (70-76)Updating...
connected with : NaN
molecule tags Oxidoreductase
source organism Rhodobacter sphaeroides
publication title Atomic resolution structures of rieske iron-sulfur protein: role of hydrogen bonds in tuning the redox potential of iron-sulfur clusters.
pubmed doi rcsb
molecule keywords Ubiquinol-cytochrome c reductase iron-sulfur subunit
total genus 36
structure length 141
sequence length 141
ec nomenclature ec 7.1.1.8: Quinol--cytochrome-c reductase.
pdb deposition date 2006-11-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00355 Rieske Rieske [2Fe-2S] domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 2nukA00
3L74E 1P84E 2HMNA 1NTZE 3FOUA 3VCPA 2NVFA 3GB4A 3L72E 4QUQA 5KLVE 1WQLA 2D2CD 4NBHD 1ULIA 5KLIC 4HKVA 5KKZC 2ZT9D 1RFSA 1G8JB 2FYNC 1O7WA 2NUKA 3GZYA 2XR8A 4PV1D 4QDDA 2QJPC 4H13D 4HM6A 3L73E 2B1XA 1SQXE 2QPZA 4HM8A 4OGQD 1PPJE 2HMJA 1O7PA 1FQTA 3GKEA 2IBZE 1UUWA 4QCKA 1RIEA 3GCEA 3H1HE 2GBWA 3GOBA 4PD4E 4NB9D 3C0DA 3N0QA 2E4PA 2Q3WA 1NYKA 1SJGA 2DE7D 1O7HA 1JM1A 1Q90C 2HMLA 1VM9A 3H1LE 4P1BH 2NUMA 2DE5D 2E75D 2I7FA 1ULJA 4H0LD 4EMJB 1UUVA 2BMOA 2DE6D 3L75E 5BOKA 3GTSA 3CX5E 2YFLA 1VF5D 2YVJB 4QDCA 4NBAD 1NTKE 2JO6A 3H1KE 3GTEA 2XSOA 4HM7A 4NBED 2E74D 1SQBE 2XRXA 2BMQA 2QJYC 1EG9A 1O7GA 4QUPA 3L70E 1VCKA 2XSHA 4HJLA 2YFIA 4AIVA 2YFJA 3GZXA 4NB8D 4NBBD 1BCCE 1PP9E 2GBXA 3GL2A 2HMMA 3TGUE 4NBDD 3BCCE 2QJKC 1L0LE 1O7NA 4NBFD 1ZRTE 1BE3E 4NBGD 3H1JE 2JZAA 4AAYB 2A06E 4HM4A 1KB9E 2E76D 3D89A 3CWBE 3DQYA 4HM5A 4U3FE 3CXHE 1SQQE 3AZCA 1G8KB 1O7MA 3EQQA 3VMHD 5HL4A 2B24A 1SQVE 2HMKA 2BCCE 4HM1A 2NVGA 4NBCD 2BMRA 3GL0A 2CKFA 5AEUA 3L71E 1KYOE 1NTME 2FYUE 4QURA 1NDOA 2NWFA 2YIUC 4H44D 1NU1E 1SQPE 1L0NE 3VMID 4HM0A 2NVEA 4P1CH 1EZVE 3VMGD 2ZYLA 4QDFA 2E4QA 4HM3A 5CXMA 4QDFB 2HMOA 3EN1A 3H1IE 5AEWA 3VCAA 4HM2A
chains in the Genus database with same CATH superfamily
3L74E 1P84E 2HMNA 1NTZE 3FOUA 3VCPA 2NVFA 3GB4A 3L72E 4QUQA 5KLVE 1WQLA 2D2CD 4NBHD 1ULIA 5KLIC 4HKVA 5KKZC 2ZT9D 1RFSA 1G8JB 2FYNC 1O7WA 2NUKA 3GZYA 2XR8A 4PV1D 4QDDA 2QJPC 4H13D 4HM6A 3L73E 2B1XA 1SQXE 2QPZA 4HM8A 4OGQD 1PPJE 2HMJA 1O7PA 1FQTA 3GKEA 2IBZE 1UUWA 4QCKA 1RIEA 3GCEA 3H1HE 2GBWA 3GOBA 4PD4E 4NB9D 3C0DA 3N0QA 2E4PA 2Q3WA 1NYKA 1SJGA 2DE7D 1O7HA 1JM1A 1Q90C 2HMLA 1VM9A 3H1LE 4P1BH 2NUMA 2DE5D 2E75D 2I7FA 1ULJA 4H0LD 4EMJB 1UUVA 2BMOA 2DE6D 3L75E 5BOKA 3GTSA 3CX5E 2YFLA 1VF5D 2YVJB 4QDCA 4NBAD 1NTKE 2JO6A 3H1KE 3GTEA 2XSOA 4HM7A 4NBED 2E74D 1SQBE 2XRXA 2BMQA 2QJYC 1EG9A 1O7GA 4QUPA 3L70E 1VCKA 2XSHA 4HJLA 2YFIA 4AIVA 2YFJA 3GZXA 4NB8D 4NBBD 1BCCE 1PP9E 2GBXA 3GL2A 2HMMA 3TGUE 4NBDD 3BCCE 2QJKC 1L0LE 1O7NA 4NBFD 1ZRTE 1BE3E 4NBGD 3H1JE 2JZAA 4AAYB 2A06E 4HM4A 1KB9E 2E76D 3D89A 3CWBE 3DQYA 4HM5A 4U3FE 3CXHE 1SQQE 3AZCA 1G8KB 1O7MA 3EQQA 3VMHD 5HL4A 2B24A 1SQVE 2HMKA 2BCCE 4HM1A 2NVGA 4NBCD 2BMRA 3GL0A 2CKFA 5AEUA 3L71E 1KYOE 1NTME 2FYUE 4QURA 1NDOA 2NWFA 2YIUC 4H44D 1NU1E 1SQPE 1L0NE 3VMID 4HM0A 2NVEA 4P1CH 1EZVE 3VMGD 2ZYLA 4QDFA 2E4QA 4HM3A 5CXMA 4QDFB 2HMOA 3EN1A 3H1IE 5AEWA 3VCAA 4HM2A
chains in the Genus database with same CATH topology
3L74E 1P84E 2HMNA 1NTZE 3FOUA 3VCPA 2NVFA 3GB4A 3L72E 4QUQA 5KLVE 1WQLA 2D2CD 4NBHD 1ULIA 5KLIC 4HKVA 5KKZC 2ZT9D 1RFSA 1G8JB 2FYNC 1O7WA 2NUKA 3GZYA 2XR8A 4PV1D 4QDDA 2QJPC 4H13D 4HM6A 3L73E 2B1XA 1SQXE 2QPZA 4HM8A 4OGQD 1PPJE 2HMJA 1O7PA 1FQTA 3GKEA 2IBZE 1UUWA 4QCKA 1RIEA 3GCEA 3H1HE 2GBWA 3GOBA 4PD4E 4NB9D 3C0DA 3N0QA 2E4PA 2Q3WA 1NYKA 1SJGA 2DE7D 1O7HA 1JM1A 1Q90C 2HMLA 1VM9A 3H1LE 4P1BH 2NUMA 2DE5D 2E75D 2I7FA 1ULJA 4H0LD 4EMJB 1UUVA 2BMOA 2DE6D 3L75E 5BOKA 3GTSA 3CX5E 2YFLA 1VF5D 2YVJB 4QDCA 4NBAD 1NTKE 2JO6A 3H1KE 3GTEA 2XSOA 4HM7A 4NBED 2E74D 1SQBE 2XRXA 2BMQA 2QJYC 1EG9A 1O7GA 4QUPA 3L70E 1VCKA 2XSHA 4HJLA 2YFIA 4AIVA 2YFJA 3GZXA 4NB8D 4NBBD 1BCCE 1PP9E 2GBXA 3GL2A 2HMMA 3TGUE 4NBDD 3BCCE 2QJKC 1L0LE 1O7NA 4NBFD 1ZRTE 1BE3E 4NBGD 3H1JE 2JZAA 4AAYB 2A06E 4HM4A 1KB9E 2E76D 3D89A 3CWBE 3DQYA 4HM5A 4U3FE 3CXHE 1SQQE 3AZCA 1G8KB 1O7MA 3EQQA 3VMHD 5HL4A 2B24A 1SQVE 2HMKA 2BCCE 4HM1A 2NVGA 4NBCD 2BMRA 3GL0A 2CKFA 5AEUA 3L71E 1KYOE 1NTME 2FYUE 4QURA 1NDOA 2NWFA 2YIUC 4H44D 1NU1E 1SQPE 1L0NE 3VMID 4HM0A 2NVEA 4P1CH 1EZVE 3VMGD 2ZYLA 4QDFA 2E4QA 4HM3A 5CXMA 4QDFB 2HMOA 3EN1A 3H1IE 5AEWA 3VCAA 4HM2A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3L74 E;  1P84 E;  2HMN A;  1NTZ E;  3FOU A;  3VCP A;  2NVF A;  3GB4 A;  3L72 E;  4QUQ A;  5KLV E;  1WQL A;  2D2C D;  4NBH D;  1ULI A;  5KLI C;  4HKV A;  5KKZ C;  2ZT9 D;  1RFS A;  1G8J B;  2FYN C;  1O7W A;  2NUK A;  3GZY A;  2XR8 A;  4PV1 D;  4QDD A;  2QJP C;  4H13 D;  4HM6 A;  3L73 E;  2B1X A;  1SQX E;  2QPZ A;  4HM8 A;  4OGQ D;  1PPJ E;  2HMJ A;  1O7P A;  1FQT A;  3GKE A;  2IBZ E;  1UUW A;  4QCK A;  1RIE A;  3GCE A;  3H1H E;  2GBW A;  3GOB A;  4PD4 E;  4NB9 D;  3C0D A;  3N0Q A;  2E4P A;  2Q3W A;  1NYK A;  1SJG A;  2DE7 D;  1O7H A;  1JM1 A;  1Q90 C;  2HML A;  1VM9 A;  3H1L E;  4P1B H;  2NUM A;  2DE5 D;  2E75 D;  2I7F A;  1ULJ A;  4H0L D;  4EMJ B;  1UUV A;  2BMO A;  2DE6 D;  3L75 E;  5BOK A;  3GTS A;  3CX5 E;  2YFL A;  1VF5 D;  2YVJ B;  4QDC A;  4NBA D;  1NTK E;  2JO6 A;  3H1K E;  3GTE A;  2XSO A;  4HM7 A;  4NBE D;  2E74 D;  1SQB E;  2XRX A;  2BMQ A;  2QJY C;  1EG9 A;  1O7G A;  4QUP A;  3L70 E;  1VCK A;  2XSH A;  4HJL A;  2YFI A;  4AIV A;  2YFJ A;  3GZX A;  4NB8 D;  4NBB D;  1BCC E;  1PP9 E;  2GBX A;  3GL2 A;  2HMM A;  3TGU E;  4NBD D;  3BCC E;  2QJK C;  1L0L E;  1O7N A;  4NBF D;  1ZRT E;  1BE3 E;  4NBG D;  3H1J E;  2JZA A;  4AAY B;  2A06 E;  4HM4 A;  1KB9 E;  2E76 D;  3D89 A;  3CWB E;  3DQY A;  4HM5 A;  4U3F E;  3CXH E;  1SQQ E;  3AZC A;  1G8K B;  1O7M A;  3EQQ A;  3VMH D;  5HL4 A;  2B24 A;  1SQV E;  2HMK A;  2BCC E;  4HM1 A;  2NVG A;  4NBC D;  2BMR A;  3GL0 A;  2CKF A;  5AEU A;  3L71 E;  1KYO E;  1NTM E;  2FYU E;  4QUR A;  1NDO A;  2NWF A;  2YIU C;  4H44 D;  1NU1 E;  1SQP E;  1L0N E;  3VMI D;  4HM0 A;  2NVE A;  4P1C H;  1EZV E;  3VMG D;  2ZYL A;  4QDF A;  2E4Q A;  4HM3 A;  5CXM A;  4QDF B;  2HMO A;  3EN1 A;  3H1I E;  5AEW A;  3VCA A;  4HM2 A; 
#chains in the Genus database with same CATH topology
 3L74 E;  1P84 E;  2HMN A;  1NTZ E;  3FOU A;  3VCP A;  2NVF A;  3GB4 A;  3L72 E;  4QUQ A;  5KLV E;  1WQL A;  2D2C D;  4NBH D;  1ULI A;  5KLI C;  4HKV A;  5KKZ C;  2ZT9 D;  1RFS A;  1G8J B;  2FYN C;  1O7W A;  2NUK A;  3GZY A;  2XR8 A;  4PV1 D;  4QDD A;  2QJP C;  4H13 D;  4HM6 A;  3L73 E;  2B1X A;  1SQX E;  2QPZ A;  4HM8 A;  4OGQ D;  1PPJ E;  2HMJ A;  1O7P A;  1FQT A;  3GKE A;  2IBZ E;  1UUW A;  4QCK A;  1RIE A;  3GCE A;  3H1H E;  2GBW A;  3GOB A;  4PD4 E;  4NB9 D;  3C0D A;  3N0Q A;  2E4P A;  2Q3W A;  1NYK A;  1SJG A;  2DE7 D;  1O7H A;  1JM1 A;  1Q90 C;  2HML A;  1VM9 A;  3H1L E;  4P1B H;  2NUM A;  2DE5 D;  2E75 D;  2I7F A;  1ULJ A;  4H0L D;  4EMJ B;  1UUV A;  2BMO A;  2DE6 D;  3L75 E;  5BOK A;  3GTS A;  3CX5 E;  2YFL A;  1VF5 D;  2YVJ B;  4QDC A;  4NBA D;  1NTK E;  2JO6 A;  3H1K E;  3GTE A;  2XSO A;  4HM7 A;  4NBE D;  2E74 D;  1SQB E;  2XRX A;  2BMQ A;  2QJY C;  1EG9 A;  1O7G A;  4QUP A;  3L70 E;  1VCK A;  2XSH A;  4HJL A;  2YFI A;  4AIV A;  2YFJ A;  3GZX A;  4NB8 D;  4NBB D;  1BCC E;  1PP9 E;  2GBX A;  3GL2 A;  2HMM A;  3TGU E;  4NBD D;  3BCC E;  2QJK C;  1L0L E;  1O7N A;  4NBF D;  1ZRT E;  1BE3 E;  4NBG D;  3H1J E;  2JZA A;  4AAY B;  2A06 E;  4HM4 A;  1KB9 E;  2E76 D;  3D89 A;  3CWB E;  3DQY A;  4HM5 A;  4U3F E;  3CXH E;  1SQQ E;  3AZC A;  1G8K B;  1O7M A;  3EQQ A;  3VMH D;  5HL4 A;  2B24 A;  1SQV E;  2HMK A;  2BCC E;  4HM1 A;  2NVG A;  4NBC D;  2BMR A;  3GL0 A;  2CKF A;  5AEU A;  3L71 E;  1KYO E;  1NTM E;  2FYU E;  4QUR A;  1NDO A;  2NWF A;  2YIU C;  4H44 D;  1NU1 E;  1SQP E;  1L0N E;  3VMI D;  4HM0 A;  2NVE A;  4P1C H;  1EZV E;  3VMG D;  2ZYL A;  4QDF A;  2E4Q A;  4HM3 A;  5CXM A;  4QDF B;  2HMO A;  3EN1 A;  3H1I E;  5AEW A;  3VCA A;  4HM2 A; 
#chains in the Genus database with same CATH homology
 3L74 E;  1P84 E;  2HMN A;  1NTZ E;  3FOU A;  3VCP A;  2NVF A;  3GB4 A;  3L72 E;  4QUQ A;  5KLV E;  1WQL A;  2D2C D;  4NBH D;  1ULI A;  5KLI C;  4HKV A;  5KKZ C;  2ZT9 D;  1RFS A;  1G8J B;  2FYN C;  1O7W A;  2NUK A;  3GZY A;  2XR8 A;  4PV1 D;  4QDD A;  2QJP C;  4H13 D;  4HM6 A;  3L73 E;  2B1X A;  1SQX E;  2QPZ A;  4HM8 A;  4OGQ D;  1PPJ E;  2HMJ A;  1O7P A;  1FQT A;  3GKE A;  2IBZ E;  1UUW A;  4QCK A;  1RIE A;  3GCE A;  3H1H E;  2GBW A;  3GOB A;  4PD4 E;  4NB9 D;  3C0D A;  3N0Q A;  2E4P A;  2Q3W A;  1NYK A;  1SJG A;  2DE7 D;  1O7H A;  1JM1 A;  1Q90 C;  2HML A;  1VM9 A;  3H1L E;  4P1B H;  2NUM A;  2DE5 D;  2E75 D;  2I7F A;  1ULJ A;  4H0L D;  4EMJ B;  1UUV A;  2BMO A;  2DE6 D;  3L75 E;  5BOK A;  3GTS A;  3CX5 E;  2YFL A;  1VF5 D;  2YVJ B;  4QDC A;  4NBA D;  1NTK E;  2JO6 A;  3H1K E;  3GTE A;  2XSO A;  4HM7 A;  4NBE D;  2E74 D;  1SQB E;  2XRX A;  2BMQ A;  2QJY C;  1EG9 A;  1O7G A;  4QUP A;  3L70 E;  1VCK A;  2XSH A;  4HJL A;  2YFI A;  4AIV A;  2YFJ A;  3GZX A;  4NB8 D;  4NBB D;  1BCC E;  1PP9 E;  2GBX A;  3GL2 A;  2HMM A;  3TGU E;  4NBD D;  3BCC E;  2QJK C;  1L0L E;  1O7N A;  4NBF D;  1ZRT E;  1BE3 E;  4NBG D;  3H1J E;  2JZA A;  4AAY B;  2A06 E;  4HM4 A;  1KB9 E;  2E76 D;  3D89 A;  3CWB E;  3DQY A;  4HM5 A;  4U3F E;  3CXH E;  1SQQ E;  3AZC A;  1G8K B;  1O7M A;  3EQQ A;  3VMH D;  5HL4 A;  2B24 A;  1SQV E;  2HMK A;  2BCC E;  4HM1 A;  2NVG A;  4NBC D;  2BMR A;  3GL0 A;  2CKF A;  5AEU A;  3L71 E;  1KYO E;  1NTM E;  2FYU E;  4QUR A;  1NDO A;  2NWF A;  2YIU C;  4H44 D;  1NU1 E;  1SQP E;  1L0N E;  3VMI D;  4HM0 A;  2NVE A;  4P1C H;  1EZV E;  3VMG D;  2ZYL A;  4QDF A;  2E4Q A;  4HM3 A;  5CXM A;  4QDF B;  2HMO A;  3EN1 A;  3H1I E;  5AEW A;  3VCA A;  4HM2 A; 
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