2NUMA

Soluble domain of rieske iron-sulfur protein
Total Genus 35
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
35
sequence length
141
structure length
141
Chain Sequence
LASIFVDVSSVEPGVQLTVKFLGKPIFIRRRTEADIELGRSVQLGQLVDTNARNANIDAGAEATDQNRTLDEAGEWLVMWGVCTHLGCVPIGGVSGDFGGWFCPCHGSHFDSAGRIRKGPAPENLPIPLAKFIDETTIQLG
2040608010012014014012010080604020
05101520253035Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYO1 (134-151)S1 (50-53)TIV1 (66-69)S2 (61-67)TI1 (54-57)TII1 (58-61)3H2 (111-113)S4 (122-126)S3 (70-76)AH1 (79-86)TI3 (104-107)3H1 (90-92)TI2 (100-103)TVIII1 (93-96)TI4 (117-120)S5 (137-141)TIV3 (130-133)TIV2 (129-132)Updating...
connected with : NaN
molecule tags Oxidoreductase
source organism Rhodobacter sphaeroides
publication title Atomic resolution structures of rieske iron-sulfur protein: role of hydrogen bonds in tuning the redox potential of iron-sulfur clusters.
pubmed doi rcsb
molecule keywords Ubiquinol-cytochrome c reductase iron-sulfur subunit
total genus 35
structure length 141
sequence length 141
ec nomenclature ec 7.1.1.8: Quinol--cytochrome-c reductase.
pdb deposition date 2006-11-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00355 Rieske Rieske [2Fe-2S] domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 2numA00
4EMJB 2D2CD 1FQTA 1NTZE 1ULJA 3EQQA 4HM4A 4NBDD 4QDDA 1PP9E 4HM3A 2XR8A 1RFSA 3BCCE 2NUKA 3H1HE 1O7MA 4P1BH 1EZVE 1KB9E 4HM0A 4NBHD 4NB8D 3L74E 5KLIC 2I7FA 4NBED 2HMNA 2QJPC 1G8KB 1SQBE 3TGUE 4OGQD 4QURA 1L0NE 1O7WA 4NBFD 4AIVA 4QCKA 1O7PA 2ZT9D 4HJLA 4QUQA 3GZYA 1NTKE 1KYOE 3GZXA 2A06E 3VMHD 4HM6A 1VM9A 2Q3WA 4NBGD 1NYKA 3VMGD 2GBWA 1EG9A 5CXMA 1RIEA 2YIUC 1O7GA 1UUWA 2HMMA 3GCEA 2NWFA 2B24A 1SJGA 5AEUA 2E76D 5KLVE 4QDCA 2E74D 3GB4A 1G8JB 3L71E 2NVGA 3GTEA 4NBCD 5BOKA 1VCKA 2ZYLA 3DQYA 1NDOA 1PPJE 2FYUE 4H44D 3GL2A 1VF5D 4HM5A 2NVEA 1SQVE 2CKFA 4PV1D 4AAYB 2B1XA 2BMRA 4HKVA 2XSOA 2DE6D 2YFJA 2E4QA 2XSHA 3L75E 2NVFA 3CXHE 3H1JE 2XRXA 3GL0A 1NTME 2FYNC 2QJKC 2QJYC 4NBBD 4QDFA 1JM1A 1SQPE 5HL4A 2BMOA 3FOUA 3N0QA 2YFLA 1WQLA 2YVJB 4NBAD 3VCPA 1L0LE 3L72E 2YFIA 3GOBA 2HMOA 4HM1A 3D89A 3VCAA 3VMID 2JO6A 3L70E 3AZCA 3CWBE 1UUVA 2BMQA 3H1IE 1BE3E 2HMJA 1SQXE 3H1KE 4QUPA 2DE7D 2HMKA 3L73E 4H0LD 4QDFB 1NU1E 2HMLA 4U3FE 1O7HA 2NUMA 3EN1A 4HM8A 4P1CH 1O7NA 4NB9D 4HM2A 1ULIA 2GBXA 1SQQE 1P84E 5KKZC 2IBZE 4PD4E 1Q90C 2JZAA 2E4PA 3GKEA 2E75D 3CX5E 4H13D 3GTSA 3C0DA 2BCCE 2DE5D 1BCCE 4HM7A 2QPZA 5AEWA 1ZRTE 3H1LE
chains in the Genus database with same CATH superfamily
4EMJB 2D2CD 1FQTA 1NTZE 1ULJA 3EQQA 4HM4A 4NBDD 4QDDA 1PP9E 4HM3A 2XR8A 1RFSA 3BCCE 2NUKA 3H1HE 1O7MA 4P1BH 1EZVE 1KB9E 4HM0A 4NBHD 4NB8D 3L74E 5KLIC 2I7FA 4NBED 2HMNA 2QJPC 1G8KB 1SQBE 3TGUE 4OGQD 4QURA 1L0NE 1O7WA 4NBFD 4AIVA 4QCKA 1O7PA 2ZT9D 4HJLA 4QUQA 3GZYA 1NTKE 1KYOE 3GZXA 2A06E 3VMHD 4HM6A 1VM9A 2Q3WA 4NBGD 1NYKA 3VMGD 2GBWA 1EG9A 5CXMA 1RIEA 2YIUC 1O7GA 1UUWA 2HMMA 3GCEA 2NWFA 2B24A 1SJGA 5AEUA 2E76D 5KLVE 4QDCA 2E74D 3GB4A 1G8JB 3L71E 2NVGA 3GTEA 4NBCD 5BOKA 1VCKA 2ZYLA 3DQYA 1NDOA 1PPJE 2FYUE 4H44D 3GL2A 1VF5D 4HM5A 2NVEA 1SQVE 2CKFA 4PV1D 4AAYB 2B1XA 2BMRA 4HKVA 2XSOA 2DE6D 2YFJA 2E4QA 2XSHA 3L75E 2NVFA 3CXHE 3H1JE 2XRXA 3GL0A 1NTME 2FYNC 2QJKC 2QJYC 4NBBD 4QDFA 1JM1A 1SQPE 5HL4A 2BMOA 3FOUA 3N0QA 2YFLA 1WQLA 2YVJB 4NBAD 3VCPA 1L0LE 3L72E 2YFIA 3GOBA 2HMOA 4HM1A 3D89A 3VCAA 3VMID 2JO6A 3L70E 3AZCA 3CWBE 1UUVA 2BMQA 3H1IE 1BE3E 2HMJA 1SQXE 3H1KE 4QUPA 2DE7D 2HMKA 3L73E 4H0LD 4QDFB 1NU1E 2HMLA 4U3FE 1O7HA 2NUMA 3EN1A 4HM8A 4P1CH 1O7NA 4NB9D 4HM2A 1ULIA 2GBXA 1SQQE 1P84E 5KKZC 2IBZE 4PD4E 1Q90C 2JZAA 2E4PA 3GKEA 2E75D 3CX5E 4H13D 3GTSA 3C0DA 2BCCE 2DE5D 1BCCE 4HM7A 2QPZA 5AEWA 1ZRTE 3H1LE
chains in the Genus database with same CATH topology
4EMJB 2D2CD 1FQTA 1NTZE 1ULJA 3EQQA 4HM4A 4NBDD 4QDDA 1PP9E 4HM3A 2XR8A 1RFSA 3BCCE 2NUKA 3H1HE 1O7MA 4P1BH 1EZVE 1KB9E 4HM0A 4NBHD 4NB8D 3L74E 5KLIC 2I7FA 4NBED 2HMNA 2QJPC 1G8KB 1SQBE 3TGUE 4OGQD 4QURA 1L0NE 1O7WA 4NBFD 4AIVA 4QCKA 1O7PA 2ZT9D 4HJLA 4QUQA 3GZYA 1NTKE 1KYOE 3GZXA 2A06E 3VMHD 4HM6A 1VM9A 2Q3WA 4NBGD 1NYKA 3VMGD 2GBWA 1EG9A 5CXMA 1RIEA 2YIUC 1O7GA 1UUWA 2HMMA 3GCEA 2NWFA 2B24A 1SJGA 5AEUA 2E76D 5KLVE 4QDCA 2E74D 3GB4A 1G8JB 3L71E 2NVGA 3GTEA 4NBCD 5BOKA 1VCKA 2ZYLA 3DQYA 1NDOA 1PPJE 2FYUE 4H44D 3GL2A 1VF5D 4HM5A 2NVEA 1SQVE 2CKFA 4PV1D 4AAYB 2B1XA 2BMRA 4HKVA 2XSOA 2DE6D 2YFJA 2E4QA 2XSHA 3L75E 2NVFA 3CXHE 3H1JE 2XRXA 3GL0A 1NTME 2FYNC 2QJKC 2QJYC 4NBBD 4QDFA 1JM1A 1SQPE 5HL4A 2BMOA 3FOUA 3N0QA 2YFLA 1WQLA 2YVJB 4NBAD 3VCPA 1L0LE 3L72E 2YFIA 3GOBA 2HMOA 4HM1A 3D89A 3VCAA 3VMID 2JO6A 3L70E 3AZCA 3CWBE 1UUVA 2BMQA 3H1IE 1BE3E 2HMJA 1SQXE 3H1KE 4QUPA 2DE7D 2HMKA 3L73E 4H0LD 4QDFB 1NU1E 2HMLA 4U3FE 1O7HA 2NUMA 3EN1A 4HM8A 4P1CH 1O7NA 4NB9D 4HM2A 1ULIA 2GBXA 1SQQE 1P84E 5KKZC 2IBZE 4PD4E 1Q90C 2JZAA 2E4PA 3GKEA 2E75D 3CX5E 4H13D 3GTSA 3C0DA 2BCCE 2DE5D 1BCCE 4HM7A 2QPZA 5AEWA 1ZRTE 3H1LE
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4EMJ B;  2D2C D;  1FQT A;  1NTZ E;  1ULJ A;  3EQQ A;  4HM4 A;  4NBD D;  4QDD A;  1PP9 E;  4HM3 A;  2XR8 A;  1RFS A;  3BCC E;  2NUK A;  3H1H E;  1O7M A;  4P1B H;  1EZV E;  1KB9 E;  4HM0 A;  4NBH D;  4NB8 D;  3L74 E;  5KLI C;  2I7F A;  4NBE D;  2HMN A;  2QJP C;  1G8K B;  1SQB E;  3TGU E;  4OGQ D;  4QUR A;  1L0N E;  1O7W A;  4NBF D;  4AIV A;  4QCK A;  1O7P A;  2ZT9 D;  4HJL A;  4QUQ A;  3GZY A;  1NTK E;  1KYO E;  3GZX A;  2A06 E;  3VMH D;  4HM6 A;  1VM9 A;  2Q3W A;  4NBG D;  1NYK A;  3VMG D;  2GBW A;  1EG9 A;  5CXM A;  1RIE A;  2YIU C;  1O7G A;  1UUW A;  2HMM A;  3GCE A;  2NWF A;  2B24 A;  1SJG A;  5AEU A;  2E76 D;  5KLV E;  4QDC A;  2E74 D;  3GB4 A;  1G8J B;  3L71 E;  2NVG A;  3GTE A;  4NBC D;  5BOK A;  1VCK A;  2ZYL A;  3DQY A;  1NDO A;  1PPJ E;  2FYU E;  4H44 D;  3GL2 A;  1VF5 D;  4HM5 A;  2NVE A;  1SQV E;  2CKF A;  4PV1 D;  4AAY B;  2B1X A;  2BMR A;  4HKV A;  2XSO A;  2DE6 D;  2YFJ A;  2E4Q A;  2XSH A;  3L75 E;  2NVF A;  3CXH E;  3H1J E;  2XRX A;  3GL0 A;  1NTM E;  2FYN C;  2QJK C;  2QJY C;  4NBB D;  4QDF A;  1JM1 A;  1SQP E;  5HL4 A;  2BMO A;  3FOU A;  3N0Q A;  2YFL A;  1WQL A;  2YVJ B;  4NBA D;  3VCP A;  1L0L E;  3L72 E;  2YFI A;  3GOB A;  2HMO A;  4HM1 A;  3D89 A;  3VCA A;  3VMI D;  2JO6 A;  3L70 E;  3AZC A;  3CWB E;  1UUV A;  2BMQ A;  3H1I E;  1BE3 E;  2HMJ A;  1SQX E;  3H1K E;  4QUP A;  2DE7 D;  2HMK A;  3L73 E;  4H0L D;  4QDF B;  1NU1 E;  2HML A;  4U3F E;  1O7H A;  2NUM A;  3EN1 A;  4HM8 A;  4P1C H;  1O7N A;  4NB9 D;  4HM2 A;  1ULI A;  2GBX A;  1SQQ E;  1P84 E;  5KKZ C;  2IBZ E;  4PD4 E;  1Q90 C;  2JZA A;  2E4P A;  3GKE A;  2E75 D;  3CX5 E;  4H13 D;  3GTS A;  3C0D A;  2BCC E;  2DE5 D;  1BCC E;  4HM7 A;  2QPZ A;  5AEW A;  1ZRT E;  3H1L E; 
#chains in the Genus database with same CATH topology
 4EMJ B;  2D2C D;  1FQT A;  1NTZ E;  1ULJ A;  3EQQ A;  4HM4 A;  4NBD D;  4QDD A;  1PP9 E;  4HM3 A;  2XR8 A;  1RFS A;  3BCC E;  2NUK A;  3H1H E;  1O7M A;  4P1B H;  1EZV E;  1KB9 E;  4HM0 A;  4NBH D;  4NB8 D;  3L74 E;  5KLI C;  2I7F A;  4NBE D;  2HMN A;  2QJP C;  1G8K B;  1SQB E;  3TGU E;  4OGQ D;  4QUR A;  1L0N E;  1O7W A;  4NBF D;  4AIV A;  4QCK A;  1O7P A;  2ZT9 D;  4HJL A;  4QUQ A;  3GZY A;  1NTK E;  1KYO E;  3GZX A;  2A06 E;  3VMH D;  4HM6 A;  1VM9 A;  2Q3W A;  4NBG D;  1NYK A;  3VMG D;  2GBW A;  1EG9 A;  5CXM A;  1RIE A;  2YIU C;  1O7G A;  1UUW A;  2HMM A;  3GCE A;  2NWF A;  2B24 A;  1SJG A;  5AEU A;  2E76 D;  5KLV E;  4QDC A;  2E74 D;  3GB4 A;  1G8J B;  3L71 E;  2NVG A;  3GTE A;  4NBC D;  5BOK A;  1VCK A;  2ZYL A;  3DQY A;  1NDO A;  1PPJ E;  2FYU E;  4H44 D;  3GL2 A;  1VF5 D;  4HM5 A;  2NVE A;  1SQV E;  2CKF A;  4PV1 D;  4AAY B;  2B1X A;  2BMR A;  4HKV A;  2XSO A;  2DE6 D;  2YFJ A;  2E4Q A;  2XSH A;  3L75 E;  2NVF A;  3CXH E;  3H1J E;  2XRX A;  3GL0 A;  1NTM E;  2FYN C;  2QJK C;  2QJY C;  4NBB D;  4QDF A;  1JM1 A;  1SQP E;  5HL4 A;  2BMO A;  3FOU A;  3N0Q A;  2YFL A;  1WQL A;  2YVJ B;  4NBA D;  3VCP A;  1L0L E;  3L72 E;  2YFI A;  3GOB A;  2HMO A;  4HM1 A;  3D89 A;  3VCA A;  3VMI D;  2JO6 A;  3L70 E;  3AZC A;  3CWB E;  1UUV A;  2BMQ A;  3H1I E;  1BE3 E;  2HMJ A;  1SQX E;  3H1K E;  4QUP A;  2DE7 D;  2HMK A;  3L73 E;  4H0L D;  4QDF B;  1NU1 E;  2HML A;  4U3F E;  1O7H A;  2NUM A;  3EN1 A;  4HM8 A;  4P1C H;  1O7N A;  4NB9 D;  4HM2 A;  1ULI A;  2GBX A;  1SQQ E;  1P84 E;  5KKZ C;  2IBZ E;  4PD4 E;  1Q90 C;  2JZA A;  2E4P A;  3GKE A;  2E75 D;  3CX5 E;  4H13 D;  3GTS A;  3C0D A;  2BCC E;  2DE5 D;  1BCC E;  4HM7 A;  2QPZ A;  5AEW A;  1ZRT E;  3H1L E; 
#chains in the Genus database with same CATH homology
 4EMJ B;  2D2C D;  1FQT A;  1NTZ E;  1ULJ A;  3EQQ A;  4HM4 A;  4NBD D;  4QDD A;  1PP9 E;  4HM3 A;  2XR8 A;  1RFS A;  3BCC E;  2NUK A;  3H1H E;  1O7M A;  4P1B H;  1EZV E;  1KB9 E;  4HM0 A;  4NBH D;  4NB8 D;  3L74 E;  5KLI C;  2I7F A;  4NBE D;  2HMN A;  2QJP C;  1G8K B;  1SQB E;  3TGU E;  4OGQ D;  4QUR A;  1L0N E;  1O7W A;  4NBF D;  4AIV A;  4QCK A;  1O7P A;  2ZT9 D;  4HJL A;  4QUQ A;  3GZY A;  1NTK E;  1KYO E;  3GZX A;  2A06 E;  3VMH D;  4HM6 A;  1VM9 A;  2Q3W A;  4NBG D;  1NYK A;  3VMG D;  2GBW A;  1EG9 A;  5CXM A;  1RIE A;  2YIU C;  1O7G A;  1UUW A;  2HMM A;  3GCE A;  2NWF A;  2B24 A;  1SJG A;  5AEU A;  2E76 D;  5KLV E;  4QDC A;  2E74 D;  3GB4 A;  1G8J B;  3L71 E;  2NVG A;  3GTE A;  4NBC D;  5BOK A;  1VCK A;  2ZYL A;  3DQY A;  1NDO A;  1PPJ E;  2FYU E;  4H44 D;  3GL2 A;  1VF5 D;  4HM5 A;  2NVE A;  1SQV E;  2CKF A;  4PV1 D;  4AAY B;  2B1X A;  2BMR A;  4HKV A;  2XSO A;  2DE6 D;  2YFJ A;  2E4Q A;  2XSH A;  3L75 E;  2NVF A;  3CXH E;  3H1J E;  2XRX A;  3GL0 A;  1NTM E;  2FYN C;  2QJK C;  2QJY C;  4NBB D;  4QDF A;  1JM1 A;  1SQP E;  5HL4 A;  2BMO A;  3FOU A;  3N0Q A;  2YFL A;  1WQL A;  2YVJ B;  4NBA D;  3VCP A;  1L0L E;  3L72 E;  2YFI A;  3GOB A;  2HMO A;  4HM1 A;  3D89 A;  3VCA A;  3VMI D;  2JO6 A;  3L70 E;  3AZC A;  3CWB E;  1UUV A;  2BMQ A;  3H1I E;  1BE3 E;  2HMJ A;  1SQX E;  3H1K E;  4QUP A;  2DE7 D;  2HMK A;  3L73 E;  4H0L D;  4QDF B;  1NU1 E;  2HML A;  4U3F E;  1O7H A;  2NUM A;  3EN1 A;  4HM8 A;  4P1C H;  1O7N A;  4NB9 D;  4HM2 A;  1ULI A;  2GBX A;  1SQQ E;  1P84 E;  5KKZ C;  2IBZ E;  4PD4 E;  1Q90 C;  2JZA A;  2E4P A;  3GKE A;  2E75 D;  3CX5 E;  4H13 D;  3GTS A;  3C0D A;  2BCC E;  2DE5 D;  1BCC E;  4HM7 A;  2QPZ A;  5AEW A;  1ZRT E;  3H1L E; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

Application loaded.