2NVFA

Soluble domain of rieske iron-sulfur protein.
Total Genus 40
204060801001201400510152025303540
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
40
sequence length
141
structure length
141
Chain Sequence
LASIFVDVSSVEPGVQLTVKFLGKPIFIRRRTEADIELGRSVQLGQLVDTNARNANIDAGAEATDQNRTLDEAGEWLVMWGVCTHLGCVPIGGVSGDFGGWFCPCHGCHYDSAGRIRKGPAPENLPIPLAKFIDETTIQLG

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYO1 (134-151)S1 (50-53)TII1 (58-61)S4 (122-126)TIV1 (66-69)S2 (61-67)TI1 (54-57)TIV2 (129-132)3H2 (111-113)S3 (70-76)3H1 (90-92)TI2 (100-103)TVIII1 (93-96)TI3 (104-107)TI4 (117-120)S5 (137-141)TIV3 (130-133)AH1 (79-86)Updating...
connected with : NaN
molecule tags Oxidoreductase
source organism Rhodobacter sphaeroides
publication title Atomic resolution structures of rieske iron-sulfur protein: role of hydrogen bonds in tuning the redox potential of iron-sulfur clusters.
pubmed doi rcsb
molecule keywords Ubiquinol-cytochrome c reductase iron-sulfur subunit
total genus 40
structure length 141
sequence length 141
ec nomenclature ec 7.1.1.8: Quinol--cytochrome-c reductase.
pdb deposition date 2006-11-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00355 Rieske Rieske [2Fe-2S] domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 2nvfA00
1UUVA 4NB9D 2XRXA 1BE3E 1O7MA 3L72E 2NVFA 1UUWA 3AZCA 1VCKA 1EZVE 3C0DA 2HMNA 3H1IE 2HMOA 1NTME 2XSHA 1SQBE 3H1KE 3DQYA 2JZAA 3GTSA 3N0QA 4AIVA 2YIUC 4HM7A 2DE5D 4HM6A 1NU1E 3GKEA 1KB9E 4NBBD 2QJYC 3GOBA 3FOUA 4HM2A 3TGUE 4NBDD 4NB8D 4QDDA 2NWFA 2E76D 2DE6D 4H13D 4HM1A 2QJKC 2FYNC 1O7WA 5AEWA 2NUKA 3VCPA 3GTEA 4NBAD 4AAYB 1O7NA 3H1JE 1VM9A 2GBWA 3CXHE 1NTZE 1PP9E 3GCEA 4QDCA 3BCCE 1P84E 2HMMA 2ZYLA 2JO6A 1G8JB 2BMOA 2BMRA 3L71E 3L74E 5KLVE 2Q3WA 4H44D 4PV1D 4QCKA 1SQVE 5KKZC 2IBZE 1G8KB 3EQQA 3GL0A 4HM3A 4HM4A 1NTKE 2GBXA 1EG9A 2NVGA 4HJLA 1SQQE 4NBCD 2B1XA 1O7HA 2YFJA 3GZYA 3H1LE 4NBHD 2FYUE 4NBFD 1ZRTE 1PPJE 3CWBE 1WQLA 2HMJA 2A06E 1SQPE 5AEUA 4HM5A 2NVEA 4P1BH 5CXMA 2I7FA 2E74D 1SJGA 2XR8A 3L73E 3VCAA 1ULIA 3VMHD 3L75E 1SQXE 2CKFA 2E4QA 1L0LE 2XSOA 4QDFA 2B24A 1ULJA 3GL2A 2E75D 4OGQD 1NDOA 1FQTA 2QPZA 4QDFB 3VMGD 1JM1A 3D89A 4H0LD 5HL4A 1KYOE 3CX5E 2HMLA 3GZXA 4P1CH 3H1HE 2E4PA 4QUPA 1L0NE 1VF5D 4PD4E 4QUQA 2BMQA 2D2CD 1O7GA 2BCCE 1NYKA 1Q90C 3EN1A 5KLIC 2DE7D 4HKVA 2HMKA 4NBED 5BOKA 1BCCE 1O7PA 2YFIA 4QURA 3GB4A 2ZT9D 4HM8A 4NBGD 4U3FE 2YFLA 2YVJB 2NUMA 3VMID 4EMJB 1RIEA 4HM0A 1RFSA 2QJPC 3L70E
chains in the Genus database with same CATH superfamily
1UUVA 4NB9D 2XRXA 1BE3E 1O7MA 3L72E 2NVFA 1UUWA 3AZCA 1VCKA 1EZVE 3C0DA 2HMNA 3H1IE 2HMOA 1NTME 2XSHA 1SQBE 3H1KE 3DQYA 2JZAA 3GTSA 3N0QA 4AIVA 2YIUC 4HM7A 2DE5D 4HM6A 1NU1E 3GKEA 1KB9E 4NBBD 2QJYC 3GOBA 3FOUA 4HM2A 3TGUE 4NBDD 4NB8D 4QDDA 2NWFA 2E76D 2DE6D 4H13D 4HM1A 2QJKC 2FYNC 1O7WA 5AEWA 2NUKA 3VCPA 3GTEA 4NBAD 4AAYB 1O7NA 3H1JE 1VM9A 2GBWA 3CXHE 1NTZE 1PP9E 3GCEA 4QDCA 3BCCE 1P84E 2HMMA 2ZYLA 2JO6A 1G8JB 2BMOA 2BMRA 3L71E 3L74E 5KLVE 2Q3WA 4H44D 4PV1D 4QCKA 1SQVE 5KKZC 2IBZE 1G8KB 3EQQA 3GL0A 4HM3A 4HM4A 1NTKE 2GBXA 1EG9A 2NVGA 4HJLA 1SQQE 4NBCD 2B1XA 1O7HA 2YFJA 3GZYA 3H1LE 4NBHD 2FYUE 4NBFD 1ZRTE 1PPJE 3CWBE 1WQLA 2HMJA 2A06E 1SQPE 5AEUA 4HM5A 2NVEA 4P1BH 5CXMA 2I7FA 2E74D 1SJGA 2XR8A 3L73E 3VCAA 1ULIA 3VMHD 3L75E 1SQXE 2CKFA 2E4QA 1L0LE 2XSOA 4QDFA 2B24A 1ULJA 3GL2A 2E75D 4OGQD 1NDOA 1FQTA 2QPZA 4QDFB 3VMGD 1JM1A 3D89A 4H0LD 5HL4A 1KYOE 3CX5E 2HMLA 3GZXA 4P1CH 3H1HE 2E4PA 4QUPA 1L0NE 1VF5D 4PD4E 4QUQA 2BMQA 2D2CD 1O7GA 2BCCE 1NYKA 1Q90C 3EN1A 5KLIC 2DE7D 4HKVA 2HMKA 4NBED 5BOKA 1BCCE 1O7PA 2YFIA 4QURA 3GB4A 2ZT9D 4HM8A 4NBGD 4U3FE 2YFLA 2YVJB 2NUMA 3VMID 4EMJB 1RIEA 4HM0A 1RFSA 2QJPC 3L70E
chains in the Genus database with same CATH topology
1UUVA 4NB9D 2XRXA 1BE3E 1O7MA 3L72E 2NVFA 1UUWA 3AZCA 1VCKA 1EZVE 3C0DA 2HMNA 3H1IE 2HMOA 1NTME 2XSHA 1SQBE 3H1KE 3DQYA 2JZAA 3GTSA 3N0QA 4AIVA 2YIUC 4HM7A 2DE5D 4HM6A 1NU1E 3GKEA 1KB9E 4NBBD 2QJYC 3GOBA 3FOUA 4HM2A 3TGUE 4NBDD 4NB8D 4QDDA 2NWFA 2E76D 2DE6D 4H13D 4HM1A 2QJKC 2FYNC 1O7WA 5AEWA 2NUKA 3VCPA 3GTEA 4NBAD 4AAYB 1O7NA 3H1JE 1VM9A 2GBWA 3CXHE 1NTZE 1PP9E 3GCEA 4QDCA 3BCCE 1P84E 2HMMA 2ZYLA 2JO6A 1G8JB 2BMOA 2BMRA 3L71E 3L74E 5KLVE 2Q3WA 4H44D 4PV1D 4QCKA 1SQVE 5KKZC 2IBZE 1G8KB 3EQQA 3GL0A 4HM3A 4HM4A 1NTKE 2GBXA 1EG9A 2NVGA 4HJLA 1SQQE 4NBCD 2B1XA 1O7HA 2YFJA 3GZYA 3H1LE 4NBHD 2FYUE 4NBFD 1ZRTE 1PPJE 3CWBE 1WQLA 2HMJA 2A06E 1SQPE 5AEUA 4HM5A 2NVEA 4P1BH 5CXMA 2I7FA 2E74D 1SJGA 2XR8A 3L73E 3VCAA 1ULIA 3VMHD 3L75E 1SQXE 2CKFA 2E4QA 1L0LE 2XSOA 4QDFA 2B24A 1ULJA 3GL2A 2E75D 4OGQD 1NDOA 1FQTA 2QPZA 4QDFB 3VMGD 1JM1A 3D89A 4H0LD 5HL4A 1KYOE 3CX5E 2HMLA 3GZXA 4P1CH 3H1HE 2E4PA 4QUPA 1L0NE 1VF5D 4PD4E 4QUQA 2BMQA 2D2CD 1O7GA 2BCCE 1NYKA 1Q90C 3EN1A 5KLIC 2DE7D 4HKVA 2HMKA 4NBED 5BOKA 1BCCE 1O7PA 2YFIA 4QURA 3GB4A 2ZT9D 4HM8A 4NBGD 4U3FE 2YFLA 2YVJB 2NUMA 3VMID 4EMJB 1RIEA 4HM0A 1RFSA 2QJPC 3L70E
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1UUV A;  4NB9 D;  2XRX A;  1BE3 E;  1O7M A;  3L72 E;  2NVF A;  1UUW A;  3AZC A;  1VCK A;  1EZV E;  3C0D A;  2HMN A;  3H1I E;  2HMO A;  1NTM E;  2XSH A;  1SQB E;  3H1K E;  3DQY A;  2JZA A;  3GTS A;  3N0Q A;  4AIV A;  2YIU C;  4HM7 A;  2DE5 D;  4HM6 A;  1NU1 E;  3GKE A;  1KB9 E;  4NBB D;  2QJY C;  3GOB A;  3FOU A;  4HM2 A;  3TGU E;  4NBD D;  4NB8 D;  4QDD A;  2NWF A;  2E76 D;  2DE6 D;  4H13 D;  4HM1 A;  2QJK C;  2FYN C;  1O7W A;  5AEW A;  2NUK A;  3VCP A;  3GTE A;  4NBA D;  4AAY B;  1O7N A;  3H1J E;  1VM9 A;  2GBW A;  3CXH E;  1NTZ E;  1PP9 E;  3GCE A;  4QDC A;  3BCC E;  1P84 E;  2HMM A;  2ZYL A;  2JO6 A;  1G8J B;  2BMO A;  2BMR A;  3L71 E;  3L74 E;  5KLV E;  2Q3W A;  4H44 D;  4PV1 D;  4QCK A;  1SQV E;  5KKZ C;  2IBZ E;  1G8K B;  3EQQ A;  3GL0 A;  4HM3 A;  4HM4 A;  1NTK E;  2GBX A;  1EG9 A;  2NVG A;  4HJL A;  1SQQ E;  4NBC D;  2B1X A;  1O7H A;  2YFJ A;  3GZY A;  3H1L E;  4NBH D;  2FYU E;  4NBF D;  1ZRT E;  1PPJ E;  3CWB E;  1WQL A;  2HMJ A;  2A06 E;  1SQP E;  5AEU A;  4HM5 A;  2NVE A;  4P1B H;  5CXM A;  2I7F A;  2E74 D;  1SJG A;  2XR8 A;  3L73 E;  3VCA A;  1ULI A;  3VMH D;  3L75 E;  1SQX E;  2CKF A;  2E4Q A;  1L0L E;  2XSO A;  4QDF A;  2B24 A;  1ULJ A;  3GL2 A;  2E75 D;  4OGQ D;  1NDO A;  1FQT A;  2QPZ A;  4QDF B;  3VMG D;  1JM1 A;  3D89 A;  4H0L D;  5HL4 A;  1KYO E;  3CX5 E;  2HML A;  3GZX A;  4P1C H;  3H1H E;  2E4P A;  4QUP A;  1L0N E;  1VF5 D;  4PD4 E;  4QUQ A;  2BMQ A;  2D2C D;  1O7G A;  2BCC E;  1NYK A;  1Q90 C;  3EN1 A;  5KLI C;  2DE7 D;  4HKV A;  2HMK A;  4NBE D;  5BOK A;  1BCC E;  1O7P A;  2YFI A;  4QUR A;  3GB4 A;  2ZT9 D;  4HM8 A;  4NBG D;  4U3F E;  2YFL A;  2YVJ B;  2NUM A;  3VMI D;  4EMJ B;  1RIE A;  4HM0 A;  1RFS A;  2QJP C;  3L70 E; 
#chains in the Genus database with same CATH topology
 1UUV A;  4NB9 D;  2XRX A;  1BE3 E;  1O7M A;  3L72 E;  2NVF A;  1UUW A;  3AZC A;  1VCK A;  1EZV E;  3C0D A;  2HMN A;  3H1I E;  2HMO A;  1NTM E;  2XSH A;  1SQB E;  3H1K E;  3DQY A;  2JZA A;  3GTS A;  3N0Q A;  4AIV A;  2YIU C;  4HM7 A;  2DE5 D;  4HM6 A;  1NU1 E;  3GKE A;  1KB9 E;  4NBB D;  2QJY C;  3GOB A;  3FOU A;  4HM2 A;  3TGU E;  4NBD D;  4NB8 D;  4QDD A;  2NWF A;  2E76 D;  2DE6 D;  4H13 D;  4HM1 A;  2QJK C;  2FYN C;  1O7W A;  5AEW A;  2NUK A;  3VCP A;  3GTE A;  4NBA D;  4AAY B;  1O7N A;  3H1J E;  1VM9 A;  2GBW A;  3CXH E;  1NTZ E;  1PP9 E;  3GCE A;  4QDC A;  3BCC E;  1P84 E;  2HMM A;  2ZYL A;  2JO6 A;  1G8J B;  2BMO A;  2BMR A;  3L71 E;  3L74 E;  5KLV E;  2Q3W A;  4H44 D;  4PV1 D;  4QCK A;  1SQV E;  5KKZ C;  2IBZ E;  1G8K B;  3EQQ A;  3GL0 A;  4HM3 A;  4HM4 A;  1NTK E;  2GBX A;  1EG9 A;  2NVG A;  4HJL A;  1SQQ E;  4NBC D;  2B1X A;  1O7H A;  2YFJ A;  3GZY A;  3H1L E;  4NBH D;  2FYU E;  4NBF D;  1ZRT E;  1PPJ E;  3CWB E;  1WQL A;  2HMJ A;  2A06 E;  1SQP E;  5AEU A;  4HM5 A;  2NVE A;  4P1B H;  5CXM A;  2I7F A;  2E74 D;  1SJG A;  2XR8 A;  3L73 E;  3VCA A;  1ULI A;  3VMH D;  3L75 E;  1SQX E;  2CKF A;  2E4Q A;  1L0L E;  2XSO A;  4QDF A;  2B24 A;  1ULJ A;  3GL2 A;  2E75 D;  4OGQ D;  1NDO A;  1FQT A;  2QPZ A;  4QDF B;  3VMG D;  1JM1 A;  3D89 A;  4H0L D;  5HL4 A;  1KYO E;  3CX5 E;  2HML A;  3GZX A;  4P1C H;  3H1H E;  2E4P A;  4QUP A;  1L0N E;  1VF5 D;  4PD4 E;  4QUQ A;  2BMQ A;  2D2C D;  1O7G A;  2BCC E;  1NYK A;  1Q90 C;  3EN1 A;  5KLI C;  2DE7 D;  4HKV A;  2HMK A;  4NBE D;  5BOK A;  1BCC E;  1O7P A;  2YFI A;  4QUR A;  3GB4 A;  2ZT9 D;  4HM8 A;  4NBG D;  4U3F E;  2YFL A;  2YVJ B;  2NUM A;  3VMI D;  4EMJ B;  1RIE A;  4HM0 A;  1RFS A;  2QJP C;  3L70 E; 
#chains in the Genus database with same CATH homology
 1UUV A;  4NB9 D;  2XRX A;  1BE3 E;  1O7M A;  3L72 E;  2NVF A;  1UUW A;  3AZC A;  1VCK A;  1EZV E;  3C0D A;  2HMN A;  3H1I E;  2HMO A;  1NTM E;  2XSH A;  1SQB E;  3H1K E;  3DQY A;  2JZA A;  3GTS A;  3N0Q A;  4AIV A;  2YIU C;  4HM7 A;  2DE5 D;  4HM6 A;  1NU1 E;  3GKE A;  1KB9 E;  4NBB D;  2QJY C;  3GOB A;  3FOU A;  4HM2 A;  3TGU E;  4NBD D;  4NB8 D;  4QDD A;  2NWF A;  2E76 D;  2DE6 D;  4H13 D;  4HM1 A;  2QJK C;  2FYN C;  1O7W A;  5AEW A;  2NUK A;  3VCP A;  3GTE A;  4NBA D;  4AAY B;  1O7N A;  3H1J E;  1VM9 A;  2GBW A;  3CXH E;  1NTZ E;  1PP9 E;  3GCE A;  4QDC A;  3BCC E;  1P84 E;  2HMM A;  2ZYL A;  2JO6 A;  1G8J B;  2BMO A;  2BMR A;  3L71 E;  3L74 E;  5KLV E;  2Q3W A;  4H44 D;  4PV1 D;  4QCK A;  1SQV E;  5KKZ C;  2IBZ E;  1G8K B;  3EQQ A;  3GL0 A;  4HM3 A;  4HM4 A;  1NTK E;  2GBX A;  1EG9 A;  2NVG A;  4HJL A;  1SQQ E;  4NBC D;  2B1X A;  1O7H A;  2YFJ A;  3GZY A;  3H1L E;  4NBH D;  2FYU E;  4NBF D;  1ZRT E;  1PPJ E;  3CWB E;  1WQL A;  2HMJ A;  2A06 E;  1SQP E;  5AEU A;  4HM5 A;  2NVE A;  4P1B H;  5CXM A;  2I7F A;  2E74 D;  1SJG A;  2XR8 A;  3L73 E;  3VCA A;  1ULI A;  3VMH D;  3L75 E;  1SQX E;  2CKF A;  2E4Q A;  1L0L E;  2XSO A;  4QDF A;  2B24 A;  1ULJ A;  3GL2 A;  2E75 D;  4OGQ D;  1NDO A;  1FQT A;  2QPZ A;  4QDF B;  3VMG D;  1JM1 A;  3D89 A;  4H0L D;  5HL4 A;  1KYO E;  3CX5 E;  2HML A;  3GZX A;  4P1C H;  3H1H E;  2E4P A;  4QUP A;  1L0N E;  1VF5 D;  4PD4 E;  4QUQ A;  2BMQ A;  2D2C D;  1O7G A;  2BCC E;  1NYK A;  1Q90 C;  3EN1 A;  5KLI C;  2DE7 D;  4HKV A;  2HMK A;  4NBE D;  5BOK A;  1BCC E;  1O7P A;  2YFI A;  4QUR A;  3GB4 A;  2ZT9 D;  4HM8 A;  4NBG D;  4U3F E;  2YFL A;  2YVJ B;  2NUM A;  3VMI D;  4EMJ B;  1RIE A;  4HM0 A;  1RFS A;  2QJP C;  3L70 E; 
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