2YVJB

Crystal structure of the ferredoxin-ferredoxin reductase (bpha3-bpha4)complex
Total Genus 16

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
16
sequence length
106
structure length
106
Chain Sequence
TFTKACSVDEVPPGEALQVSHDAQKVAIFNVDGEFFATQDQCTHGEWSLSEGGYLDGDVVECSLHMGKFCVRTGKVKSPPPCEPLKVYPIRIEGRDVLVDFSRAAL

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
S1 (4-8)TII'2 (94-97)S3 (25-32)TIV1 (8-11)TII1 (13-16)TIV2 (9-12)S2 (16-22)TIV3 (21-24)S11 (88-89)S4 (35-40)TI1 (49-52)S5 (42-43)TIV7 (43-46)TIV8 (44-47)TIV14 (80-83)TIV11 (63-66)S6 (48-49)S8 (60-62)TIV9 (51-54)S7 (55-57)TIV10 (56-59)S9 (69-71)TI2 (64-67)TIV12 (72-75)TI3 (71-74)EMPTYTIV13 (77-80)TIV16 (102-105)S13 (97-100)S12 (91-94)TIV15 (101-104)TIV5 (31-34)S10 (77-79)Updating...
connected with : NaN
molecule tags Oxidoreductase/electron transport
source organism Pseudomonas sp.
publication title Molecular Mechanism of the Redox-dependent Interaction between NADH-dependent Ferredoxin Reductase and Rieske-type [2Fe-2S] Ferredoxin
pubmed doi rcsb
molecule keywords Ferredoxin reductase
total genus 16
structure length 106
sequence length 106
ec nomenclature
pdb deposition date 2007-04-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF00355 Rieske Rieske [2Fe-2S] domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 2yvjB00
4NB9D 2BMRA 2ZT9D 2A06E 4QDCA 2DE5D 2E75D 1VF5D 1G8KB 1FQTA 2NVGA 4HM0A 4EMJB 2XR8A 3L71E 1BE3E 1ZRTE 4NBGD 3VCAA 3VCPA 2NVFA 1O7PA 3TGUE 4H0LD 3N0QA 3H1KE 5KKZC 2NUKA 4HM1A 1WQLA 3CWBE 4QURA 2JO6A 4NBED 2HMJA 3GZYA 1L0LE 1G8JB 3H1IE 3H1JE 2QJYC 1SQVE 3GTSA 3GZXA 1UUWA 1NTZE 3L72E 3GOBA 2IBZE 2YIUC 3GL0A 3L70E 4HKVA 4QUQA 4HM5A 2GBWA 3L73E 2E4QA 1O7MA 5CXMA 1SQQE 3FOUA 4U3FE 4HM4A 1UUVA 4HM2A 4NB8D 3L75E 4NBFD 3D89A 5BOKA 1VCKA 1O7GA 2FYNC 1PP9E 4HJLA 2QPZA 2QJKC 3BCCE 1BCCE 1RFSA 1VM9A 4P1CH 5AEUA 4AAYB 4NBDD 1EZVE 3GCEA 1KB9E 2QJPC 1O7HA 2I7FA 3GB4A 2BMQA 2DE7D 2B24A 1NTKE 3DQYA 2D2CD 2NVEA 3L74E 2YVJB 1SQPE 4NBHD 2DE6D 5KLIC 2NWFA 3H1LE 1Q90C 1SQXE 3AZCA 4NBBD 1NTME 1ULJA 4QDFB 2NUMA 4QDFA 4AIVA 2GBXA 1EG9A 2XSOA 3VMID 4P1BH 2E76D 1O7NA 5AEWA 3GL2A 4HM3A 2XRXA 1PPJE 2HMMA 1ULIA 3CXHE 2YFIA 1SQBE 2BCCE 2Q3WA 3EQQA 2BMOA 5KLVE 2E4PA 2E74D 1NDOA 1NU1E 1SJGA 3EN1A 4QDDA 1JM1A 2HMKA 4PV1D 2XSHA 4QUPA 4H44D 3VMGD 1RIEA 2CKFA 2FYUE 1KYOE 1P84E 2JZAA 2YFJA 3C0DA 3H1HE 3GKEA 2HMOA 3CX5E 4HM8A 5HL4A 4HM7A 2HMNA 4QCKA 2B1XA 4NBAD 1O7WA 4HM6A 4NBCD 4H13D 2HMLA 1L0NE 2YFLA 1NYKA 2ZYLA 4PD4E 3GTEA 3VMHD 4OGQD
chains in the Genus database with same CATH superfamily
4NB9D 2BMRA 2ZT9D 2A06E 4QDCA 2DE5D 2E75D 1VF5D 1G8KB 1FQTA 2NVGA 4HM0A 4EMJB 2XR8A 3L71E 1BE3E 1ZRTE 4NBGD 3VCAA 3VCPA 2NVFA 1O7PA 3TGUE 4H0LD 3N0QA 3H1KE 5KKZC 2NUKA 4HM1A 1WQLA 3CWBE 4QURA 2JO6A 4NBED 2HMJA 3GZYA 1L0LE 1G8JB 3H1IE 3H1JE 2QJYC 1SQVE 3GTSA 3GZXA 1UUWA 1NTZE 3L72E 3GOBA 2IBZE 2YIUC 3GL0A 3L70E 4HKVA 4QUQA 4HM5A 2GBWA 3L73E 2E4QA 1O7MA 5CXMA 1SQQE 3FOUA 4U3FE 4HM4A 1UUVA 4HM2A 4NB8D 3L75E 4NBFD 3D89A 5BOKA 1VCKA 1O7GA 2FYNC 1PP9E 4HJLA 2QPZA 2QJKC 3BCCE 1BCCE 1RFSA 1VM9A 4P1CH 5AEUA 4AAYB 4NBDD 1EZVE 3GCEA 1KB9E 2QJPC 1O7HA 2I7FA 3GB4A 2BMQA 2DE7D 2B24A 1NTKE 3DQYA 2D2CD 2NVEA 3L74E 2YVJB 1SQPE 4NBHD 2DE6D 5KLIC 2NWFA 3H1LE 1Q90C 1SQXE 3AZCA 4NBBD 1NTME 1ULJA 4QDFB 2NUMA 4QDFA 4AIVA 2GBXA 1EG9A 2XSOA 3VMID 4P1BH 2E76D 1O7NA 5AEWA 3GL2A 4HM3A 2XRXA 1PPJE 2HMMA 1ULIA 3CXHE 2YFIA 1SQBE 2BCCE 2Q3WA 3EQQA 2BMOA 5KLVE 2E4PA 2E74D 1NDOA 1NU1E 1SJGA 3EN1A 4QDDA 1JM1A 2HMKA 4PV1D 2XSHA 4QUPA 4H44D 3VMGD 1RIEA 2CKFA 2FYUE 1KYOE 1P84E 2JZAA 2YFJA 3C0DA 3H1HE 3GKEA 2HMOA 3CX5E 4HM8A 5HL4A 4HM7A 2HMNA 4QCKA 2B1XA 4NBAD 1O7WA 4HM6A 4NBCD 4H13D 2HMLA 1L0NE 2YFLA 1NYKA 2ZYLA 4PD4E 3GTEA 3VMHD 4OGQD
chains in the Genus database with same CATH topology
4NB9D 2BMRA 2ZT9D 2A06E 4QDCA 2DE5D 2E75D 1VF5D 1G8KB 1FQTA 2NVGA 4HM0A 4EMJB 2XR8A 3L71E 1BE3E 1ZRTE 4NBGD 3VCAA 3VCPA 2NVFA 1O7PA 3TGUE 4H0LD 3N0QA 3H1KE 5KKZC 2NUKA 4HM1A 1WQLA 3CWBE 4QURA 2JO6A 4NBED 2HMJA 3GZYA 1L0LE 1G8JB 3H1IE 3H1JE 2QJYC 1SQVE 3GTSA 3GZXA 1UUWA 1NTZE 3L72E 3GOBA 2IBZE 2YIUC 3GL0A 3L70E 4HKVA 4QUQA 4HM5A 2GBWA 3L73E 2E4QA 1O7MA 5CXMA 1SQQE 3FOUA 4U3FE 4HM4A 1UUVA 4HM2A 4NB8D 3L75E 4NBFD 3D89A 5BOKA 1VCKA 1O7GA 2FYNC 1PP9E 4HJLA 2QPZA 2QJKC 3BCCE 1BCCE 1RFSA 1VM9A 4P1CH 5AEUA 4AAYB 4NBDD 1EZVE 3GCEA 1KB9E 2QJPC 1O7HA 2I7FA 3GB4A 2BMQA 2DE7D 2B24A 1NTKE 3DQYA 2D2CD 2NVEA 3L74E 2YVJB 1SQPE 4NBHD 2DE6D 5KLIC 2NWFA 3H1LE 1Q90C 1SQXE 3AZCA 4NBBD 1NTME 1ULJA 4QDFB 2NUMA 4QDFA 4AIVA 2GBXA 1EG9A 2XSOA 3VMID 4P1BH 2E76D 1O7NA 5AEWA 3GL2A 4HM3A 2XRXA 1PPJE 2HMMA 1ULIA 3CXHE 2YFIA 1SQBE 2BCCE 2Q3WA 3EQQA 2BMOA 5KLVE 2E4PA 2E74D 1NDOA 1NU1E 1SJGA 3EN1A 4QDDA 1JM1A 2HMKA 4PV1D 2XSHA 4QUPA 4H44D 3VMGD 1RIEA 2CKFA 2FYUE 1KYOE 1P84E 2JZAA 2YFJA 3C0DA 3H1HE 3GKEA 2HMOA 3CX5E 4HM8A 5HL4A 4HM7A 2HMNA 4QCKA 2B1XA 4NBAD 1O7WA 4HM6A 4NBCD 4H13D 2HMLA 1L0NE 2YFLA 1NYKA 2ZYLA 4PD4E 3GTEA 3VMHD 4OGQD
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4NB9 D;  2BMR A;  2ZT9 D;  2A06 E;  4QDC A;  2DE5 D;  2E75 D;  1VF5 D;  1G8K B;  1FQT A;  2NVG A;  4HM0 A;  4EMJ B;  2XR8 A;  3L71 E;  1BE3 E;  1ZRT E;  4NBG D;  3VCA A;  3VCP A;  2NVF A;  1O7P A;  3TGU E;  4H0L D;  3N0Q A;  3H1K E;  5KKZ C;  2NUK A;  4HM1 A;  1WQL A;  3CWB E;  4QUR A;  2JO6 A;  4NBE D;  2HMJ A;  3GZY A;  1L0L E;  1G8J B;  3H1I E;  3H1J E;  2QJY C;  1SQV E;  3GTS A;  3GZX A;  1UUW A;  1NTZ E;  3L72 E;  3GOB A;  2IBZ E;  2YIU C;  3GL0 A;  3L70 E;  4HKV A;  4QUQ A;  4HM5 A;  2GBW A;  3L73 E;  2E4Q A;  1O7M A;  5CXM A;  1SQQ E;  3FOU A;  4U3F E;  4HM4 A;  1UUV A;  4HM2 A;  4NB8 D;  3L75 E;  4NBF D;  3D89 A;  5BOK A;  1VCK A;  1O7G A;  2FYN C;  1PP9 E;  4HJL A;  2QPZ A;  2QJK C;  3BCC E;  1BCC E;  1RFS A;  1VM9 A;  4P1C H;  5AEU A;  4AAY B;  4NBD D;  1EZV E;  3GCE A;  1KB9 E;  2QJP C;  1O7H A;  2I7F A;  3GB4 A;  2BMQ A;  2DE7 D;  2B24 A;  1NTK E;  3DQY A;  2D2C D;  2NVE A;  3L74 E;  2YVJ B;  1SQP E;  4NBH D;  2DE6 D;  5KLI C;  2NWF A;  3H1L E;  1Q90 C;  1SQX E;  3AZC A;  4NBB D;  1NTM E;  1ULJ A;  4QDF B;  2NUM A;  4QDF A;  4AIV A;  2GBX A;  1EG9 A;  2XSO A;  3VMI D;  4P1B H;  2E76 D;  1O7N A;  5AEW A;  3GL2 A;  4HM3 A;  2XRX A;  1PPJ E;  2HMM A;  1ULI A;  3CXH E;  2YFI A;  1SQB E;  2BCC E;  2Q3W A;  3EQQ A;  2BMO A;  5KLV E;  2E4P A;  2E74 D;  1NDO A;  1NU1 E;  1SJG A;  3EN1 A;  4QDD A;  1JM1 A;  2HMK A;  4PV1 D;  2XSH A;  4QUP A;  4H44 D;  3VMG D;  1RIE A;  2CKF A;  2FYU E;  1KYO E;  1P84 E;  2JZA A;  2YFJ A;  3C0D A;  3H1H E;  3GKE A;  2HMO A;  3CX5 E;  4HM8 A;  5HL4 A;  4HM7 A;  2HMN A;  4QCK A;  2B1X A;  4NBA D;  1O7W A;  4HM6 A;  4NBC D;  4H13 D;  2HML A;  1L0N E;  2YFL A;  1NYK A;  2ZYL A;  4PD4 E;  3GTE A;  3VMH D;  4OGQ D; 
#chains in the Genus database with same CATH topology
 4NB9 D;  2BMR A;  2ZT9 D;  2A06 E;  4QDC A;  2DE5 D;  2E75 D;  1VF5 D;  1G8K B;  1FQT A;  2NVG A;  4HM0 A;  4EMJ B;  2XR8 A;  3L71 E;  1BE3 E;  1ZRT E;  4NBG D;  3VCA A;  3VCP A;  2NVF A;  1O7P A;  3TGU E;  4H0L D;  3N0Q A;  3H1K E;  5KKZ C;  2NUK A;  4HM1 A;  1WQL A;  3CWB E;  4QUR A;  2JO6 A;  4NBE D;  2HMJ A;  3GZY A;  1L0L E;  1G8J B;  3H1I E;  3H1J E;  2QJY C;  1SQV E;  3GTS A;  3GZX A;  1UUW A;  1NTZ E;  3L72 E;  3GOB A;  2IBZ E;  2YIU C;  3GL0 A;  3L70 E;  4HKV A;  4QUQ A;  4HM5 A;  2GBW A;  3L73 E;  2E4Q A;  1O7M A;  5CXM A;  1SQQ E;  3FOU A;  4U3F E;  4HM4 A;  1UUV A;  4HM2 A;  4NB8 D;  3L75 E;  4NBF D;  3D89 A;  5BOK A;  1VCK A;  1O7G A;  2FYN C;  1PP9 E;  4HJL A;  2QPZ A;  2QJK C;  3BCC E;  1BCC E;  1RFS A;  1VM9 A;  4P1C H;  5AEU A;  4AAY B;  4NBD D;  1EZV E;  3GCE A;  1KB9 E;  2QJP C;  1O7H A;  2I7F A;  3GB4 A;  2BMQ A;  2DE7 D;  2B24 A;  1NTK E;  3DQY A;  2D2C D;  2NVE A;  3L74 E;  2YVJ B;  1SQP E;  4NBH D;  2DE6 D;  5KLI C;  2NWF A;  3H1L E;  1Q90 C;  1SQX E;  3AZC A;  4NBB D;  1NTM E;  1ULJ A;  4QDF B;  2NUM A;  4QDF A;  4AIV A;  2GBX A;  1EG9 A;  2XSO A;  3VMI D;  4P1B H;  2E76 D;  1O7N A;  5AEW A;  3GL2 A;  4HM3 A;  2XRX A;  1PPJ E;  2HMM A;  1ULI A;  3CXH E;  2YFI A;  1SQB E;  2BCC E;  2Q3W A;  3EQQ A;  2BMO A;  5KLV E;  2E4P A;  2E74 D;  1NDO A;  1NU1 E;  1SJG A;  3EN1 A;  4QDD A;  1JM1 A;  2HMK A;  4PV1 D;  2XSH A;  4QUP A;  4H44 D;  3VMG D;  1RIE A;  2CKF A;  2FYU E;  1KYO E;  1P84 E;  2JZA A;  2YFJ A;  3C0D A;  3H1H E;  3GKE A;  2HMO A;  3CX5 E;  4HM8 A;  5HL4 A;  4HM7 A;  2HMN A;  4QCK A;  2B1X A;  4NBA D;  1O7W A;  4HM6 A;  4NBC D;  4H13 D;  2HML A;  1L0N E;  2YFL A;  1NYK A;  2ZYL A;  4PD4 E;  3GTE A;  3VMH D;  4OGQ D; 
#chains in the Genus database with same CATH homology
 4NB9 D;  2BMR A;  2ZT9 D;  2A06 E;  4QDC A;  2DE5 D;  2E75 D;  1VF5 D;  1G8K B;  1FQT A;  2NVG A;  4HM0 A;  4EMJ B;  2XR8 A;  3L71 E;  1BE3 E;  1ZRT E;  4NBG D;  3VCA A;  3VCP A;  2NVF A;  1O7P A;  3TGU E;  4H0L D;  3N0Q A;  3H1K E;  5KKZ C;  2NUK A;  4HM1 A;  1WQL A;  3CWB E;  4QUR A;  2JO6 A;  4NBE D;  2HMJ A;  3GZY A;  1L0L E;  1G8J B;  3H1I E;  3H1J E;  2QJY C;  1SQV E;  3GTS A;  3GZX A;  1UUW A;  1NTZ E;  3L72 E;  3GOB A;  2IBZ E;  2YIU C;  3GL0 A;  3L70 E;  4HKV A;  4QUQ A;  4HM5 A;  2GBW A;  3L73 E;  2E4Q A;  1O7M A;  5CXM A;  1SQQ E;  3FOU A;  4U3F E;  4HM4 A;  1UUV A;  4HM2 A;  4NB8 D;  3L75 E;  4NBF D;  3D89 A;  5BOK A;  1VCK A;  1O7G A;  2FYN C;  1PP9 E;  4HJL A;  2QPZ A;  2QJK C;  3BCC E;  1BCC E;  1RFS A;  1VM9 A;  4P1C H;  5AEU A;  4AAY B;  4NBD D;  1EZV E;  3GCE A;  1KB9 E;  2QJP C;  1O7H A;  2I7F A;  3GB4 A;  2BMQ A;  2DE7 D;  2B24 A;  1NTK E;  3DQY A;  2D2C D;  2NVE A;  3L74 E;  2YVJ B;  1SQP E;  4NBH D;  2DE6 D;  5KLI C;  2NWF A;  3H1L E;  1Q90 C;  1SQX E;  3AZC A;  4NBB D;  1NTM E;  1ULJ A;  4QDF B;  2NUM A;  4QDF A;  4AIV A;  2GBX A;  1EG9 A;  2XSO A;  3VMI D;  4P1B H;  2E76 D;  1O7N A;  5AEW A;  3GL2 A;  4HM3 A;  2XRX A;  1PPJ E;  2HMM A;  1ULI A;  3CXH E;  2YFI A;  1SQB E;  2BCC E;  2Q3W A;  3EQQ A;  2BMO A;  5KLV E;  2E4P A;  2E74 D;  1NDO A;  1NU1 E;  1SJG A;  3EN1 A;  4QDD A;  1JM1 A;  2HMK A;  4PV1 D;  2XSH A;  4QUP A;  4H44 D;  3VMG D;  1RIE A;  2CKF A;  2FYU E;  1KYO E;  1P84 E;  2JZA A;  2YFJ A;  3C0D A;  3H1H E;  3GKE A;  2HMO A;  3CX5 E;  4HM8 A;  5HL4 A;  4HM7 A;  2HMN A;  4QCK A;  2B1X A;  4NBA D;  1O7W A;  4HM6 A;  4NBC D;  4H13 D;  2HML A;  1L0N E;  2YFL A;  1NYK A;  2ZYL A;  4PD4 E;  3GTE A;  3VMH D;  4OGQ D; 
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