3AZC | Genus

Total Genus 31

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	31
sequence length	133
structure length	133
Chain Sequence	HHIEGRAVAKDALGNDIKVSEYLAKHLPGDRSLAQGIKGDPTYVIVTEDHQIANYGLNAVCTHLGCVVPWNVSENKFICPCHGSQYDSTGKVVRGPAPLSLALVKATVTEDDKLVFTPWTEIDFRTGKEPWWT

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Oxidoreductase
source organism	Thermosynechococcus elongatus
publication title	Structure of a thermophilic cyanobacterial b(6)f-type Rieske protein pubmed doi rcsb
molecule keywords	Cytochrome b6-f complex iron-sulfur subunit
total genus	31
structure length	133
sequence length	133
ec nomenclature	ec 7.1.1.6: Plastoquinol--plastocyanin reductase.
pdb deposition date	2011-05-23

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00355	Rieske	Rieske [2Fe-2S] domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.102.10.10	Mainly Beta	3-layer Sandwich	Rieske Iron-sulfur Protein	Rieske [2Fe-2S] iron-sulphur domain	3azcA00

2FYUE 2XR8A 4HM5A 2FYNC 4U3FE 3DQYA 3GCEA 1Q90C 2BMRA 2DE7D 4HM4A 3H1HE 2HMKA 4HM1A 1G8JB 1NU1E 2YIUC 2D2CD 1ULIA 2HMJA 4H0LD 3L73E 3N0QA 4H44D 3H1JE 3GKEA 1G8KB 3EQQA 1EZVE 3VCPA 2E75D 5BOKA 2NVGA 3GB4A 2CKFA 1ULJA 4NB9D 2YVJB 2HMOA 1O7NA 2E76D 3GTEA 4QDCA 1NYKA 3L74E 3CX5E 4H13D 4HM6A 4NBHD 4QDFB 1PPJE 4NBGD 2YFIA 1VF5D 4PD4E 1KYOE 4HM7A 2YFJA 2IBZE 1NTZE 1ZRTE 1NTKE 2GBXA 1O7MA 1O7WA 3H1KE 1SQQE 2E4PA 2E74D 3VMHD 4NBCD 3GL0A 2HMMA 4NBAD 2Q3WA 4QCKA 2B24A 1SQBE 3C0DA 3VMID 4NB8D 2E4QA 4HJLA 1P84E 1O7HA 3L75E 2XRXA 1RFSA 4AIVA 2XSHA 3H1LE 4HM2A 1PP9E 1L0NE 1BCCE 5AEUA 5HL4A 4NBED 2BMQA 1SQVE 1BE3E 4HM8A 2BCCE 3D89A 2NVFA 1VCKA 2ZT9D 2QJKC 1NTME 2I7FA 3BCCE 1WQLA 4AAYB 4EMJB 3VCAA 1UUVA 1EG9A 4OGQD 1SQPE 2NWFA 2QJPC 4NBDD 3GZYA 4QDDA 2NUMA 1L0LE 2JO6A 3H1IE 3GOBA 1VM9A 1JM1A 1NDOA 3FOUA 1O7PA 3GL2A 4HM3A 3GTSA 1SJGA 2GBWA 2NVEA 3AZCA 5CXMA 4QURA 1KB9E 1RIEA 2QJYC 4HM0A 5KLIC 2A06E 2NUKA 2JZAA 3GZXA 1FQTA 2DE5D 3L70E 2DE6D 5AEWA 3TGUE 4QDFA 2QPZA 3EN1A 2YFLA 2B1XA 3CXHE 4NBBD 2ZYLA 4QUQA 4P1BH 4PV1D 2XSOA 1UUWA 3CWBE 3L72E 4NBFD 2HMLA 4QUPA 5KKZC 1O7GA 2HMNA 3VMGD 2BMOA 4HKVA 3L71E 5KLVE 1SQXE 4P1CH
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 2FYU E;  2XR8 A;  4HM5 A;  2FYN C;  4U3F E;  3DQY A;  3GCE A;  1Q90 C;  2BMR A;  2DE7 D;  4HM4 A;  3H1H E;  2HMK A;  4HM1 A;  1G8J B;  1NU1 E;  2YIU C;  2D2C D;  1ULI A;  2HMJ A;  4H0L D;  3L73 E;  3N0Q A;  4H44 D;  3H1J E;  3GKE A;  1G8K B;  3EQQ A;  1EZV E;  3VCP A;  2E75 D;  5BOK A;  2NVG A;  3GB4 A;  2CKF A;  1ULJ A;  4NB9 D;  2YVJ B;  2HMO A;  1O7N A;  2E76 D;  3GTE A;  4QDC A;  1NYK A;  3L74 E;  3CX5 E;  4H13 D;  4HM6 A;  4NBH D;  4QDF B;  1PPJ E;  4NBG D;  2YFI A;  1VF5 D;  4PD4 E;  1KYO E;  4HM7 A;  2YFJ A;  2IBZ E;  1NTZ E;  1ZRT E;  1NTK E;  2GBX A;  1O7M A;  1O7W A;  3H1K E;  1SQQ E;  2E4P A;  2E74 D;  3VMH D;  4NBC D;  3GL0 A;  2HMM A;  4NBA D;  2Q3W A;  4QCK A;  2B24 A;  1SQB E;  3C0D A;  3VMI D;  4NB8 D;  2E4Q A;  4HJL A;  1P84 E;  1O7H A;  3L75 E;  2XRX A;  1RFS A;  4AIV A;  2XSH A;  3H1L E;  4HM2 A;  1PP9 E;  1L0N E;  1BCC E;  5AEU A;  5HL4 A;  4NBE D;  2BMQ A;  1SQV E;  1BE3 E;  4HM8 A;  2BCC E;  3D89 A;  2NVF A;  1VCK A;  2ZT9 D;  2QJK C;  1NTM E;  2I7F A;  3BCC E;  1WQL A;  4AAY B;  4EMJ B;  3VCA A;  1UUV A;  1EG9 A;  4OGQ D;  1SQP E;  2NWF A;  2QJP C;  4NBD D;  3GZY A;  4QDD A;  2NUM A;  1L0L E;  2JO6 A;  3H1I E;  3GOB A;  1VM9 A;  1JM1 A;  1NDO A;  3FOU A;  1O7P A;  3GL2 A;  4HM3 A;  3GTS A;  1SJG A;  2GBW A;  2NVE A;  3AZC A;  5CXM A;  4QUR A;  1KB9 E;  1RIE A;  2QJY C;  4HM0 A;  5KLI C;  2A06 E;  2NUK A;  2JZA A;  3GZX A;  1FQT A;  2DE5 D;  3L70 E;  2DE6 D;  5AEW A;  3TGU E;  4QDF A;  2QPZ A;  3EN1 A;  2YFL A;  2B1X A;  3CXH E;  4NBB D;  2ZYL A;  4QUQ A;  4P1B H;  4PV1 D;  2XSO A;  1UUW A;  3CWB E;  3L72 E;  4NBF D;  2HML A;  4QUP A;  5KKZ C;  1O7G A;  2HMN A;  3VMG D;  2BMO A;  4HKV A;  3L71 E;  5KLV E;  1SQX E;  4P1C H; 
#chains in the Genus database with same CATH topology
 2FYU E;  2XR8 A;  4HM5 A;  2FYN C;  4U3F E;  3DQY A;  3GCE A;  1Q90 C;  2BMR A;  2DE7 D;  4HM4 A;  3H1H E;  2HMK A;  4HM1 A;  1G8J B;  1NU1 E;  2YIU C;  2D2C D;  1ULI A;  2HMJ A;  4H0L D;  3L73 E;  3N0Q A;  4H44 D;  3H1J E;  3GKE A;  1G8K B;  3EQQ A;  1EZV E;  3VCP A;  2E75 D;  5BOK A;  2NVG A;  3GB4 A;  2CKF A;  1ULJ A;  4NB9 D;  2YVJ B;  2HMO A;  1O7N A;  2E76 D;  3GTE A;  4QDC A;  1NYK A;  3L74 E;  3CX5 E;  4H13 D;  4HM6 A;  4NBH D;  4QDF B;  1PPJ E;  4NBG D;  2YFI A;  1VF5 D;  4PD4 E;  1KYO E;  4HM7 A;  2YFJ A;  2IBZ E;  1NTZ E;  1ZRT E;  1NTK E;  2GBX A;  1O7M A;  1O7W A;  3H1K E;  1SQQ E;  2E4P A;  2E74 D;  3VMH D;  4NBC D;  3GL0 A;  2HMM A;  4NBA D;  2Q3W A;  4QCK A;  2B24 A;  1SQB E;  3C0D A;  3VMI D;  4NB8 D;  2E4Q A;  4HJL A;  1P84 E;  1O7H A;  3L75 E;  2XRX A;  1RFS A;  4AIV A;  2XSH A;  3H1L E;  4HM2 A;  1PP9 E;  1L0N E;  1BCC E;  5AEU A;  5HL4 A;  4NBE D;  2BMQ A;  1SQV E;  1BE3 E;  4HM8 A;  2BCC E;  3D89 A;  2NVF A;  1VCK A;  2ZT9 D;  2QJK C;  1NTM E;  2I7F A;  3BCC E;  1WQL A;  4AAY B;  4EMJ B;  3VCA A;  1UUV A;  1EG9 A;  4OGQ D;  1SQP E;  2NWF A;  2QJP C;  4NBD D;  3GZY A;  4QDD A;  2NUM A;  1L0L E;  2JO6 A;  3H1I E;  3GOB A;  1VM9 A;  1JM1 A;  1NDO A;  3FOU A;  1O7P A;  3GL2 A;  4HM3 A;  3GTS A;  1SJG A;  2GBW A;  2NVE A;  3AZC A;  5CXM A;  4QUR A;  1KB9 E;  1RIE A;  2QJY C;  4HM0 A;  5KLI C;  2A06 E;  2NUK A;  2JZA A;  3GZX A;  1FQT A;  2DE5 D;  3L70 E;  2DE6 D;  5AEW A;  3TGU E;  4QDF A;  2QPZ A;  3EN1 A;  2YFL A;  2B1X A;  3CXH E;  4NBB D;  2ZYL A;  4QUQ A;  4P1B H;  4PV1 D;  2XSO A;  1UUW A;  3CWB E;  3L72 E;  4NBF D;  2HML A;  4QUP A;  5KKZ C;  1O7G A;  2HMN A;  3VMG D;  2BMO A;  4HKV A;  3L71 E;  5KLV E;  1SQX E;  4P1C H; 
#chains in the Genus database with same CATH homology
 2FYU E;  2XR8 A;  4HM5 A;  2FYN C;  4U3F E;  3DQY A;  3GCE A;  1Q90 C;  2BMR A;  2DE7 D;  4HM4 A;  3H1H E;  2HMK A;  4HM1 A;  1G8J B;  1NU1 E;  2YIU C;  2D2C D;  1ULI A;  2HMJ A;  4H0L D;  3L73 E;  3N0Q A;  4H44 D;  3H1J E;  3GKE A;  1G8K B;  3EQQ A;  1EZV E;  3VCP A;  2E75 D;  5BOK A;  2NVG A;  3GB4 A;  2CKF A;  1ULJ A;  4NB9 D;  2YVJ B;  2HMO A;  1O7N A;  2E76 D;  3GTE A;  4QDC A;  1NYK A;  3L74 E;  3CX5 E;  4H13 D;  4HM6 A;  4NBH D;  4QDF B;  1PPJ E;  4NBG D;  2YFI A;  1VF5 D;  4PD4 E;  1KYO E;  4HM7 A;  2YFJ A;  2IBZ E;  1NTZ E;  1ZRT E;  1NTK E;  2GBX A;  1O7M A;  1O7W A;  3H1K E;  1SQQ E;  2E4P A;  2E74 D;  3VMH D;  4NBC D;  3GL0 A;  2HMM A;  4NBA D;  2Q3W A;  4QCK A;  2B24 A;  1SQB E;  3C0D A;  3VMI D;  4NB8 D;  2E4Q A;  4HJL A;  1P84 E;  1O7H A;  3L75 E;  2XRX A;  1RFS A;  4AIV A;  2XSH A;  3H1L E;  4HM2 A;  1PP9 E;  1L0N E;  1BCC E;  5AEU A;  5HL4 A;  4NBE D;  2BMQ A;  1SQV E;  1BE3 E;  4HM8 A;  2BCC E;  3D89 A;  2NVF A;  1VCK A;  2ZT9 D;  2QJK C;  1NTM E;  2I7F A;  3BCC E;  1WQL A;  4AAY B;  4EMJ B;  3VCA A;  1UUV A;  1EG9 A;  4OGQ D;  1SQP E;  2NWF A;  2QJP C;  4NBD D;  3GZY A;  4QDD A;  2NUM A;  1L0L E;  2JO6 A;  3H1I E;  3GOB A;  1VM9 A;  1JM1 A;  1NDO A;  3FOU A;  1O7P A;  3GL2 A;  4HM3 A;  3GTS A;  1SJG A;  2GBW A;  2NVE A;  3AZC A;  5CXM A;  4QUR A;  1KB9 E;  1RIE A;  2QJY C;  4HM0 A;  5KLI C;  2A06 E;  2NUK A;  2JZA A;  3GZX A;  1FQT A;  2DE5 D;  3L70 E;  2DE6 D;  5AEW A;  3TGU E;  4QDF A;  2QPZ A;  3EN1 A;  2YFL A;  2B1X A;  3CXH E;  4NBB D;  2ZYL A;  4QUQ A;  4P1B H;  4PV1 D;  2XSO A;  1UUW A;  3CWB E;  3L72 E;  4NBF D;  2HML A;  4QUP A;  5KKZ C;  1O7G A;  2HMN A;  3VMG D;  2BMO A;  4HKV A;  3L71 E;  5KLV E;  1SQX E;  4P1C H;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3AZCA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations