3D89 | Genus

Total Genus 29

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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	29
sequence length	141
structure length	136
Chain Sequence	KYTSVCVGREEDIRKSERMTAVVHDREVVIFYHKGEYHAMDIRCYHSGGPLHLGEIEDFNGQSCIVCPWHKYKITLATGEGLYQSINPKPKWCSKGVKQRIHTVKVDNGNIYVTLSKEPFKCDSDYYATGEFKVIQ

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Electron transport
source organism	Mus musculus
publication title	X-ray structure of a soluble Rieske-type ferredoxin from Mus musculus. pubmed doi rcsb
molecule keywords	Rieske domain-containing protein
total genus	29
structure length	136
sequence length	141
ec nomenclature
pdb deposition date	2008-05-22

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF13806	Rieske_2	Rieske-like [2Fe-2S] domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.102.10.10	Mainly Beta	3-layer Sandwich	Rieske Iron-sulfur Protein	Rieske [2Fe-2S] iron-sulphur domain	3d89A00

3H1HE 3CWBE 4HM2A 1NYKA 4HM4A 4H0LD 4QDFA 4H44D 2NVEA 2D2CD 2JZAA 1SQQE 4HM8A 2I7FA 2E76D 3H1JE 3H1IE 2BMOA 2NUKA 2JO6A 3GTSA 2XSOA 2FYNC 2DE5D 3BCCE 1Q90C 4NBBD 4NBFD 4PD4E 1KYOE 2XSHA 5HL4A 1NTME 1PPJE 4QCKA 3AZCA 3GZXA 1UUWA 4QURA 3VCAA 2BCCE 1NDOA 3TGUE 1EZVE 3GTEA 3L70E 1JM1A 4NBED 3VCPA 2QPZA 1ULIA 2NUMA 2BMQA 2HMOA 4H13D 3L72E 1O7MA 2A06E 2YFIA 1P84E 2NWFA 1SQXE 1RFSA 1NTKE 3H1KE 4NBDD 3GL2A 4AAYB 2HMLA 2XRXA 1O7NA 2GBWA 5BOKA 3C0DA 2E74D 1VF5D 1ULJA 1O7PA 2XR8A 2Q3WA 2YFJA 4AIVA 4NBHD 3CX5E 4NBGD 2ZYLA 2IBZE 3L73E 4HM5A 3FOUA 4HM7A 4QDDA 2CKFA 1O7HA 3L74E 5AEUA 1VCKA 1VM9A 1UUVA 2HMJA 2FYUE 3DQYA 3D89A 3N0QA 1NTZE 2GBXA 2ZT9D 1BCCE 1WQLA 1L0NE 3CXHE 2YIUC 4HJLA 5KLVE 3VMHD 1SQVE 2B1XA 4QDFB 2BMRA 4HM1A 2NVGA 2DE7D 4HM0A 2QJKC 4QUPA 3H1LE 4HM6A 2B24A 3VMID 4P1BH 4HKVA 1SQBE 1G8KB 1SJGA 2YFLA 2HMKA 2NVFA 1RIEA 2QJPC 2HMMA 4NB8D 3GB4A 4P1CH 2HMNA 4EMJB 4NBAD 3VMGD 1FQTA 1O7WA 1BE3E 1PP9E 3EN1A 4QDCA 3L75E 1L0LE 1G8JB 2YVJB 3GL0A 3GKEA 3GZYA 2DE6D 4NB9D 4OGQD 5KKZC 1SQPE 3GOBA 5AEWA 4U3FE 1ZRTE 4HM3A 2E4QA 4NBCD 1EG9A 4QUQA 2E75D 5CXMA 4PV1D 1KB9E 2QJYC 1NU1E 5KLIC 3GCEA 2E4PA 1O7GA 3EQQA 3L71E
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 3H1H E;  3CWB E;  4HM2 A;  1NYK A;  4HM4 A;  4H0L D;  4QDF A;  4H44 D;  2NVE A;  2D2C D;  2JZA A;  1SQQ E;  4HM8 A;  2I7F A;  2E76 D;  3H1J E;  3H1I E;  2BMO A;  2NUK A;  2JO6 A;  3GTS A;  2XSO A;  2FYN C;  2DE5 D;  3BCC E;  1Q90 C;  4NBB D;  4NBF D;  4PD4 E;  1KYO E;  2XSH A;  5HL4 A;  1NTM E;  1PPJ E;  4QCK A;  3AZC A;  3GZX A;  1UUW A;  4QUR A;  3VCA A;  2BCC E;  1NDO A;  3TGU E;  1EZV E;  3GTE A;  3L70 E;  1JM1 A;  4NBE D;  3VCP A;  2QPZ A;  1ULI A;  2NUM A;  2BMQ A;  2HMO A;  4H13 D;  3L72 E;  1O7M A;  2A06 E;  2YFI A;  1P84 E;  2NWF A;  1SQX E;  1RFS A;  1NTK E;  3H1K E;  4NBD D;  3GL2 A;  4AAY B;  2HML A;  2XRX A;  1O7N A;  2GBW A;  5BOK A;  3C0D A;  2E74 D;  1VF5 D;  1ULJ A;  1O7P A;  2XR8 A;  2Q3W A;  2YFJ A;  4AIV A;  4NBH D;  3CX5 E;  4NBG D;  2ZYL A;  2IBZ E;  3L73 E;  4HM5 A;  3FOU A;  4HM7 A;  4QDD A;  2CKF A;  1O7H A;  3L74 E;  5AEU A;  1VCK A;  1VM9 A;  1UUV A;  2HMJ A;  2FYU E;  3DQY A;  3D89 A;  3N0Q A;  1NTZ E;  2GBX A;  2ZT9 D;  1BCC E;  1WQL A;  1L0N E;  3CXH E;  2YIU C;  4HJL A;  5KLV E;  3VMH D;  1SQV E;  2B1X A;  4QDF B;  2BMR A;  4HM1 A;  2NVG A;  2DE7 D;  4HM0 A;  2QJK C;  4QUP A;  3H1L E;  4HM6 A;  2B24 A;  3VMI D;  4P1B H;  4HKV A;  1SQB E;  1G8K B;  1SJG A;  2YFL A;  2HMK A;  2NVF A;  1RIE A;  2QJP C;  2HMM A;  4NB8 D;  3GB4 A;  4P1C H;  2HMN A;  4EMJ B;  4NBA D;  3VMG D;  1FQT A;  1O7W A;  1BE3 E;  1PP9 E;  3EN1 A;  4QDC A;  3L75 E;  1L0L E;  1G8J B;  2YVJ B;  3GL0 A;  3GKE A;  3GZY A;  2DE6 D;  4NB9 D;  4OGQ D;  5KKZ C;  1SQP E;  3GOB A;  5AEW A;  4U3F E;  1ZRT E;  4HM3 A;  2E4Q A;  4NBC D;  1EG9 A;  4QUQ A;  2E75 D;  5CXM A;  4PV1 D;  1KB9 E;  2QJY C;  1NU1 E;  5KLI C;  3GCE A;  2E4P A;  1O7G A;  3EQQ A;  3L71 E; 
#chains in the Genus database with same CATH topology
 3H1H E;  3CWB E;  4HM2 A;  1NYK A;  4HM4 A;  4H0L D;  4QDF A;  4H44 D;  2NVE A;  2D2C D;  2JZA A;  1SQQ E;  4HM8 A;  2I7F A;  2E76 D;  3H1J E;  3H1I E;  2BMO A;  2NUK A;  2JO6 A;  3GTS A;  2XSO A;  2FYN C;  2DE5 D;  3BCC E;  1Q90 C;  4NBB D;  4NBF D;  4PD4 E;  1KYO E;  2XSH A;  5HL4 A;  1NTM E;  1PPJ E;  4QCK A;  3AZC A;  3GZX A;  1UUW A;  4QUR A;  3VCA A;  2BCC E;  1NDO A;  3TGU E;  1EZV E;  3GTE A;  3L70 E;  1JM1 A;  4NBE D;  3VCP A;  2QPZ A;  1ULI A;  2NUM A;  2BMQ A;  2HMO A;  4H13 D;  3L72 E;  1O7M A;  2A06 E;  2YFI A;  1P84 E;  2NWF A;  1SQX E;  1RFS A;  1NTK E;  3H1K E;  4NBD D;  3GL2 A;  4AAY B;  2HML A;  2XRX A;  1O7N A;  2GBW A;  5BOK A;  3C0D A;  2E74 D;  1VF5 D;  1ULJ A;  1O7P A;  2XR8 A;  2Q3W A;  2YFJ A;  4AIV A;  4NBH D;  3CX5 E;  4NBG D;  2ZYL A;  2IBZ E;  3L73 E;  4HM5 A;  3FOU A;  4HM7 A;  4QDD A;  2CKF A;  1O7H A;  3L74 E;  5AEU A;  1VCK A;  1VM9 A;  1UUV A;  2HMJ A;  2FYU E;  3DQY A;  3D89 A;  3N0Q A;  1NTZ E;  2GBX A;  2ZT9 D;  1BCC E;  1WQL A;  1L0N E;  3CXH E;  2YIU C;  4HJL A;  5KLV E;  3VMH D;  1SQV E;  2B1X A;  4QDF B;  2BMR A;  4HM1 A;  2NVG A;  2DE7 D;  4HM0 A;  2QJK C;  4QUP A;  3H1L E;  4HM6 A;  2B24 A;  3VMI D;  4P1B H;  4HKV A;  1SQB E;  1G8K B;  1SJG A;  2YFL A;  2HMK A;  2NVF A;  1RIE A;  2QJP C;  2HMM A;  4NB8 D;  3GB4 A;  4P1C H;  2HMN A;  4EMJ B;  4NBA D;  3VMG D;  1FQT A;  1O7W A;  1BE3 E;  1PP9 E;  3EN1 A;  4QDC A;  3L75 E;  1L0L E;  1G8J B;  2YVJ B;  3GL0 A;  3GKE A;  3GZY A;  2DE6 D;  4NB9 D;  4OGQ D;  5KKZ C;  1SQP E;  3GOB A;  5AEW A;  4U3F E;  1ZRT E;  4HM3 A;  2E4Q A;  4NBC D;  1EG9 A;  4QUQ A;  2E75 D;  5CXM A;  4PV1 D;  1KB9 E;  2QJY C;  1NU1 E;  5KLI C;  3GCE A;  2E4P A;  1O7G A;  3EQQ A;  3L71 E; 
#chains in the Genus database with same CATH homology
 3H1H E;  3CWB E;  4HM2 A;  1NYK A;  4HM4 A;  4H0L D;  4QDF A;  4H44 D;  2NVE A;  2D2C D;  2JZA A;  1SQQ E;  4HM8 A;  2I7F A;  2E76 D;  3H1J E;  3H1I E;  2BMO A;  2NUK A;  2JO6 A;  3GTS A;  2XSO A;  2FYN C;  2DE5 D;  3BCC E;  1Q90 C;  4NBB D;  4NBF D;  4PD4 E;  1KYO E;  2XSH A;  5HL4 A;  1NTM E;  1PPJ E;  4QCK A;  3AZC A;  3GZX A;  1UUW A;  4QUR A;  3VCA A;  2BCC E;  1NDO A;  3TGU E;  1EZV E;  3GTE A;  3L70 E;  1JM1 A;  4NBE D;  3VCP A;  2QPZ A;  1ULI A;  2NUM A;  2BMQ A;  2HMO A;  4H13 D;  3L72 E;  1O7M A;  2A06 E;  2YFI A;  1P84 E;  2NWF A;  1SQX E;  1RFS A;  1NTK E;  3H1K E;  4NBD D;  3GL2 A;  4AAY B;  2HML A;  2XRX A;  1O7N A;  2GBW A;  5BOK A;  3C0D A;  2E74 D;  1VF5 D;  1ULJ A;  1O7P A;  2XR8 A;  2Q3W A;  2YFJ A;  4AIV A;  4NBH D;  3CX5 E;  4NBG D;  2ZYL A;  2IBZ E;  3L73 E;  4HM5 A;  3FOU A;  4HM7 A;  4QDD A;  2CKF A;  1O7H A;  3L74 E;  5AEU A;  1VCK A;  1VM9 A;  1UUV A;  2HMJ A;  2FYU E;  3DQY A;  3D89 A;  3N0Q A;  1NTZ E;  2GBX A;  2ZT9 D;  1BCC E;  1WQL A;  1L0N E;  3CXH E;  2YIU C;  4HJL A;  5KLV E;  3VMH D;  1SQV E;  2B1X A;  4QDF B;  2BMR A;  4HM1 A;  2NVG A;  2DE7 D;  4HM0 A;  2QJK C;  4QUP A;  3H1L E;  4HM6 A;  2B24 A;  3VMI D;  4P1B H;  4HKV A;  1SQB E;  1G8K B;  1SJG A;  2YFL A;  2HMK A;  2NVF A;  1RIE A;  2QJP C;  2HMM A;  4NB8 D;  3GB4 A;  4P1C H;  2HMN A;  4EMJ B;  4NBA D;  3VMG D;  1FQT A;  1O7W A;  1BE3 E;  1PP9 E;  3EN1 A;  4QDC A;  3L75 E;  1L0L E;  1G8J B;  2YVJ B;  3GL0 A;  3GKE A;  3GZY A;  2DE6 D;  4NB9 D;  4OGQ D;  5KKZ C;  1SQP E;  3GOB A;  5AEW A;  4U3F E;  1ZRT E;  4HM3 A;  2E4Q A;  4NBC D;  1EG9 A;  4QUQ A;  2E75 D;  5CXM A;  4PV1 D;  1KB9 E;  2QJY C;  1NU1 E;  5KLI C;  3GCE A;  2E4P A;  1O7G A;  3EQQ A;  3L71 E;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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3D89A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations