3EN1 | Genus

Total Genus 147

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	147
sequence length	426
structure length	424
Chain Sequence	WNTSEIEALFDEHAGRIDPRIYTDEDLYQLELERVFARSWLLLGHETQIRKPGDYITTYMGEDPVVVVRQKDASIAVFLNQCRHRGMRICRADAGNAKAFTCSYHGWAYDTAGNLVNVPYEAESFACLNKKEWSPLKARVETYKGLIFANWDENAVDLDTYLGEAKFYMDHMLDRTEAGTEAIPGVQKWVIPCNWKFAAEQFCSDMYHAGTTSHLSGILAGLPEEMADLAPPTVGKQYRASWGGHGSGFYVGDPNLMLAIMGPKVTSYWTEGPASEKAAERLGSVERGSKLMVEHMTVFPTCSFLPGINTVRTWHPRGPNEVEVWAFTVVDADAPDDIKEEFRRQTLRTFSAGGVFEQDDGENWVEIQHILRGHKARSRPFNAEMSMDQTVDNDPVYPGRISNNVYSEEAARGLYAHWLRMMTS

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

molecule tags	Oxidoreductase
source organism	Pseudomonas putida
publication title	Structures of the multicomponent Rieske non-heme iron toluene 2,3-dioxygenase enzyme system pubmed doi rcsb
molecule keywords	Benzene 1,2-dioxygenase subunit alpha
total genus	147
structure length	424
sequence length	426
ec nomenclature	ec 1.14.12.11: Toluene dioxygenase.
pdb deposition date	2008-09-25

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00355	Rieske	Rieske [2Fe-2S] domain
A	PF00848	Ring_hydroxyl_A	Ring hydroxylating alpha subunit (catalytic domain)

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.102.10.10	Mainly Beta	3-layer Sandwich	Rieske Iron-sulfur Protein	Rieske [2Fe-2S] iron-sulphur domain	3en1A02
3.90.380.10	Alpha Beta	Alpha-Beta Complex	Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1	Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1	3en1A01

1NTKE 1Q90C 1ZRTE 4NBHD 2DE6A 2B24A 2Q3WA 3CX5E 5KLIC 4NB8A 4NBBA 3N0QA 2DE5D 2XSOA 1WQLA 1VCKA 3H1JE 4HJLA 4HM5A 2BCCE 3GL2A 2GBWA 4NBAD 4NBED 1O7GA 4NBGA 1ULIA 4NBCD 3VCAA 4HKVA 1L0LE 1EZVE 5CXMA 2NVEA 1KB9E 5KLVE 2JO6A 4NBHA 3FOUA 1BE3E 2E74D 2YIUC 1UUWA 2JZAA 4U3FE 2DE5A 3VMHA 2NVFA 3EN1A 2E76D 3GTEA 4NBAA 2B1XA 1SQQE 3H1IE 3L72E 4NBEA 3GZXA 4NBCA 3GKQA 2DE7D 1RFSA 2NWFA 5AEUA 1UUVA 2HMLA 3CWBE 1SQXE 4H13D 4QCKA 4EMJB 3GL0A 1Z03A 1EG9A 4P1CH 3VMHD 1O7HA 3H1HE 4HM0A 2HMNA 4HM7A 3VMGA 1VM9A 3L74E 1ULJA 1WW9A 2BMOA 2HMOA 3GCFA 4NBDD 2QJYC 3C0DA 3L71E 2DE7A 3BCCE 2XR8A 1PPJE 1NU1E 2QJPC 2E4QA 2ZYLA 2FYNC 2HMKA 4HM8A 1NTZE 4QDDA 2XSHA 5AEWA 1RIEA 3VMID 2YFLA 4HM2A 1JM1A 3D89A 1SQVE 2D2CD 2HMMA 3VCPA 2XRXA 4NBDA 4NBFD 4PD4E 2HMJA 2NUKA 4HM6A 2BMRA 1VF5D 4HM3A 4OGQD 3DQYA 2BMQA 2YVJB 3EQQA 1G8KB 3GB4A 4QDFB 1O7WA 2E4PA 2IBZE 3VMIA 4P1BH 1L0NE 1SQPE 4QDCA 1O7MA 2QPZA 1G8JB 1O7PA 4NBFA 2YFIA 1SJGA 3GCEA 1SQBE 1NYKA 1KYOE 4H0LD 3TGUE 2QJKC 4H44D 5BOKA 5KKZC 4AIVA 3GZYA 4NB9D 2YFJA 2GBXA 1O7NA 3L73E 4HM1A 2NUMA 2E75D 1FQTA 1Z02A 3GTSA 5HL4A 2I7FA 2NVGA 3H1KE 3VMGD 2CKFA 4QUQA 1P84E 2DE6D 4NB9A 4NB8D 1NDOA 3AZCA 4NBBD 1NTME 4HM4A 1PP9E 4QUPA 1BCCE 3GOBA 4NBGD 2A06E 4QURA 4AAYB 2FYUE 3L75E 3GKEA 4PV1D 2ZT9D 3H1LE 3CXHE 1Z01A 3L70E 4QDFA
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 1NTK E;  1Q90 C;  1ZRT E;  4NBH D;  2DE6 A;  2B24 A;  2Q3W A;  3CX5 E;  5KLI C;  4NB8 A;  4NBB A;  3N0Q A;  2DE5 D;  2XSO A;  1WQL A;  1VCK A;  3H1J E;  4HJL A;  4HM5 A;  2BCC E;  3GL2 A;  2GBW A;  4NBA D;  4NBE D;  1O7G A;  4NBG A;  1ULI A;  4NBC D;  3VCA A;  4HKV A;  1L0L E;  1EZV E;  5CXM A;  2NVE A;  1KB9 E;  5KLV E;  2JO6 A;  4NBH A;  3FOU A;  1BE3 E;  2E74 D;  2YIU C;  1UUW A;  2JZA A;  4U3F E;  2DE5 A;  3VMH A;  2NVF A;  3EN1 A;  2E76 D;  3GTE A;  4NBA A;  2B1X A;  1SQQ E;  3H1I E;  3L72 E;  4NBE A;  3GZX A;  4NBC A;  3GKQ A;  2DE7 D;  1RFS A;  2NWF A;  5AEU A;  1UUV A;  2HML A;  3CWB E;  1SQX E;  4H13 D;  4QCK A;  4EMJ B;  3GL0 A;  1Z03 A;  1EG9 A;  4P1C H;  3VMH D;  1O7H A;  3H1H E;  4HM0 A;  2HMN A;  4HM7 A;  3VMG A;  1VM9 A;  3L74 E;  1ULJ A;  1WW9 A;  2BMO A;  2HMO A;  3GCF A;  4NBD D;  2QJY C;  3C0D A;  3L71 E;  2DE7 A;  3BCC E;  2XR8 A;  1PPJ E;  1NU1 E;  2QJP C;  2E4Q A;  2ZYL A;  2FYN C;  2HMK A;  4HM8 A;  1NTZ E;  4QDD A;  2XSH A;  5AEW A;  1RIE A;  3VMI D;  2YFL A;  4HM2 A;  1JM1 A;  3D89 A;  1SQV E;  2D2C D;  2HMM A;  3VCP A;  2XRX A;  4NBD A;  4NBF D;  4PD4 E;  2HMJ A;  2NUK A;  4HM6 A;  2BMR A;  1VF5 D;  4HM3 A;  4OGQ D;  3DQY A;  2BMQ A;  2YVJ B;  3EQQ A;  1G8K B;  3GB4 A;  4QDF B;  1O7W A;  2E4P A;  2IBZ E;  3VMI A;  4P1B H;  1L0N E;  1SQP E;  4QDC A;  1O7M A;  2QPZ A;  1G8J B;  1O7P A;  4NBF A;  2YFI A;  1SJG A;  3GCE A;  1SQB E;  1NYK A;  1KYO E;  4H0L D;  3TGU E;  2QJK C;  4H44 D;  5BOK A;  5KKZ C;  4AIV A;  3GZY A;  4NB9 D;  2YFJ A;  2GBX A;  1O7N A;  3L73 E;  4HM1 A;  2NUM A;  2E75 D;  1FQT A;  1Z02 A;  3GTS A;  5HL4 A;  2I7F A;  2NVG A;  3H1K E;  3VMG D;  2CKF A;  4QUQ A;  1P84 E;  2DE6 D;  4NB9 A;  4NB8 D;  1NDO A;  3AZC A;  4NBB D;  1NTM E;  4HM4 A;  1PP9 E;  4QUP A;  1BCC E;  3GOB A;  4NBG D;  2A06 E;  4QUR A;  4AAY B;  2FYU E;  3L75 E;  3GKE A;  4PV1 D;  2ZT9 D;  3H1L E;  3CXH E;  1Z01 A;  3L70 E;  4QDF A; 
#chains in the Genus database with same CATH topology
 1NTK E;  1Q90 C;  1ZRT E;  4NBH D;  2DE6 A;  2B24 A;  2Q3W A;  3CX5 E;  5KLI C;  4NB8 A;  4NBB A;  3N0Q A;  2DE5 D;  2XSO A;  1WQL A;  1VCK A;  3H1J E;  4HJL A;  4HM5 A;  2BCC E;  3GL2 A;  2GBW A;  4NBA D;  4NBE D;  1O7G A;  4NBG A;  1ULI A;  4NBC D;  3VCA A;  4HKV A;  1L0L E;  1EZV E;  5CXM A;  2NVE A;  1KB9 E;  5KLV E;  2JO6 A;  4NBH A;  3FOU A;  1BE3 E;  2E74 D;  2YIU C;  1UUW A;  2JZA A;  4U3F E;  2DE5 A;  3VMH A;  2NVF A;  3EN1 A;  2E76 D;  3GTE A;  4NBA A;  2B1X A;  1SQQ E;  3H1I E;  3L72 E;  4NBE A;  3GZX A;  4NBC A;  3GKQ A;  2DE7 D;  1RFS A;  2NWF A;  5AEU A;  1UUV A;  2HML A;  3CWB E;  1SQX E;  4H13 D;  4QCK A;  4EMJ B;  3GL0 A;  1Z03 A;  1EG9 A;  4P1C H;  3VMH D;  1O7H A;  3H1H E;  4HM0 A;  2HMN A;  4HM7 A;  3VMG A;  1VM9 A;  3L74 E;  1ULJ A;  1WW9 A;  2BMO A;  2HMO A;  3GCF A;  4NBD D;  2QJY C;  3C0D A;  3L71 E;  2DE7 A;  3BCC E;  2XR8 A;  1PPJ E;  1NU1 E;  2QJP C;  2E4Q A;  2ZYL A;  2FYN C;  2HMK A;  4HM8 A;  1NTZ E;  4QDD A;  2XSH A;  5AEW A;  1RIE A;  3VMI D;  2YFL A;  4HM2 A;  1JM1 A;  3D89 A;  1SQV E;  2D2C D;  2HMM A;  3VCP A;  2XRX A;  4NBD A;  4NBF D;  4PD4 E;  2HMJ A;  2NUK A;  4HM6 A;  2BMR A;  1VF5 D;  4HM3 A;  4OGQ D;  3DQY A;  2BMQ A;  2YVJ B;  3EQQ A;  1G8K B;  3GB4 A;  4QDF B;  1O7W A;  2E4P A;  2IBZ E;  3VMI A;  4P1B H;  1L0N E;  1SQP E;  4QDC A;  1O7M A;  2QPZ A;  1G8J B;  1O7P A;  4NBF A;  2YFI A;  1SJG A;  3GCE A;  1SQB E;  1NYK A;  1KYO E;  4H0L D;  3TGU E;  2QJK C;  4H44 D;  5BOK A;  5KKZ C;  4AIV A;  3GZY A;  4NB9 D;  2YFJ A;  2GBX A;  1O7N A;  3L73 E;  4HM1 A;  2NUM A;  2E75 D;  1FQT A;  1Z02 A;  3GTS A;  5HL4 A;  2I7F A;  2NVG A;  3H1K E;  3VMG D;  2CKF A;  4QUQ A;  1P84 E;  2DE6 D;  4NB9 A;  4NB8 D;  1NDO A;  3AZC A;  4NBB D;  1NTM E;  4HM4 A;  1PP9 E;  4QUP A;  1BCC E;  3GOB A;  4NBG D;  2A06 E;  4QUR A;  4AAY B;  2FYU E;  3L75 E;  3GKE A;  4PV1 D;  2ZT9 D;  3H1L E;  3CXH E;  1Z01 A;  3L70 E;  4QDF A; 
#chains in the Genus database with same CATH homology
 1NTK E;  1Q90 C;  1ZRT E;  4NBH D;  2DE6 A;  2B24 A;  2Q3W A;  3CX5 E;  5KLI C;  4NB8 A;  4NBB A;  3N0Q A;  2DE5 D;  2XSO A;  1WQL A;  1VCK A;  3H1J E;  4HJL A;  4HM5 A;  2BCC E;  3GL2 A;  2GBW A;  4NBA D;  4NBE D;  1O7G A;  4NBG A;  1ULI A;  4NBC D;  3VCA A;  4HKV A;  1L0L E;  1EZV E;  5CXM A;  2NVE A;  1KB9 E;  5KLV E;  2JO6 A;  4NBH A;  3FOU A;  1BE3 E;  2E74 D;  2YIU C;  1UUW A;  2JZA A;  4U3F E;  2DE5 A;  3VMH A;  2NVF A;  3EN1 A;  2E76 D;  3GTE A;  4NBA A;  2B1X A;  1SQQ E;  3H1I E;  3L72 E;  4NBE A;  3GZX A;  4NBC A;  3GKQ A;  2DE7 D;  1RFS A;  2NWF A;  5AEU A;  1UUV A;  2HML A;  3CWB E;  1SQX E;  4H13 D;  4QCK A;  4EMJ B;  3GL0 A;  1Z03 A;  1EG9 A;  4P1C H;  3VMH D;  1O7H A;  3H1H E;  4HM0 A;  2HMN A;  4HM7 A;  3VMG A;  1VM9 A;  3L74 E;  1ULJ A;  1WW9 A;  2BMO A;  2HMO A;  3GCF A;  4NBD D;  2QJY C;  3C0D A;  3L71 E;  2DE7 A;  3BCC E;  2XR8 A;  1PPJ E;  1NU1 E;  2QJP C;  2E4Q A;  2ZYL A;  2FYN C;  2HMK A;  4HM8 A;  1NTZ E;  4QDD A;  2XSH A;  5AEW A;  1RIE A;  3VMI D;  2YFL A;  4HM2 A;  1JM1 A;  3D89 A;  1SQV E;  2D2C D;  2HMM A;  3VCP A;  2XRX A;  4NBD A;  4NBF D;  4PD4 E;  2HMJ A;  2NUK A;  4HM6 A;  2BMR A;  1VF5 D;  4HM3 A;  4OGQ D;  3DQY A;  2BMQ A;  2YVJ B;  3EQQ A;  1G8K B;  3GB4 A;  4QDF B;  1O7W A;  2E4P A;  2IBZ E;  3VMI A;  4P1B H;  1L0N E;  1SQP E;  4QDC A;  1O7M A;  2QPZ A;  1G8J B;  1O7P A;  4NBF A;  2YFI A;  1SJG A;  3GCE A;  1SQB E;  1NYK A;  1KYO E;  4H0L D;  3TGU E;  2QJK C;  4H44 D;  5BOK A;  5KKZ C;  4AIV A;  3GZY A;  4NB9 D;  2YFJ A;  2GBX A;  1O7N A;  3L73 E;  4HM1 A;  2NUM A;  2E75 D;  1FQT A;  1Z02 A;  3GTS A;  5HL4 A;  2I7F A;  2NVG A;  3H1K E;  3VMG D;  2CKF A;  4QUQ A;  1P84 E;  2DE6 D;  4NB9 A;  4NB8 D;  1NDO A;  3AZC A;  4NBB D;  1NTM E;  4HM4 A;  1PP9 E;  4QUP A;  1BCC E;  3GOB A;  4NBG D;  2A06 E;  4QUR A;  4AAY B;  2FYU E;  3L75 E;  3GKE A;  4PV1 D;  2ZT9 D;  3H1L E;  3CXH E;  1Z01 A;  3L70 E;  4QDF A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

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#similar chains, but unknotted
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3EN1A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

pfam database annotations