3GZY | Genus

Total Genus 156

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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	156
sequence length	440
structure length	440
Chain Sequence	NWTPDAIRALVDQDNGKLDARIYADQDLYQLELERVFGRSWLMLGHETHIPKIGDYLTTYMGEDPVIMVRQKDQSIKVFLNQCRHRGMRIVRSDGGNAKAFTCTYHGWAYDIAGNLVNVPFEKEAFCDKKEGDCGFDKADWGPLQARVETYKGLVFANWDPEAPDLKTYLSDAMPYMDVMLDRTEAGTEAIGGIQKWVIPCNWKFAAEQFCSDMYHAGTMSHLSGVLAGLPPEMDLTQIQLSKNGNQFRSAWGGHGAGWFINDSSILLSVVGPKITQYWTQGPAAEKAARRVPQLPILDMFGQHMTVFPTCSFLPGINTIRTWHPRGPNEVEVWAFVLVDADAPEDIKEEFRLQNIRTFNAGGVFEQDDGENWVEIQRVMRGHKAKSTSLCAKMGLNVPNKNNPAYPGKTAYVYAEEAARGMYHHWSRMMSEPSWDTLKP

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

molecule tags	Oxidoreductase
source organism	Comamonas testosteroni
publication title	Structural Characterization of Pandoraea pnomenusa B-356 Biphenyl Dioxygenase Reveals Features of Potent Polychlorinated Biphenyl-Degrading Enzymes pubmed doi rcsb
molecule keywords	Biphenyl dioxygenase subunit alpha
total genus	156
structure length	440
sequence length	440
ec nomenclature	ec 1.14.12.18: Biphenyl 2,3-dioxygenase.
pdb deposition date	2009-04-08

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00355	Rieske	Rieske [2Fe-2S] domain
A	PF00848	Ring_hydroxyl_A	Ring hydroxylating alpha subunit (catalytic domain)

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.102.10.10	Mainly Beta	3-layer Sandwich	Rieske Iron-sulfur Protein	Rieske [2Fe-2S] iron-sulphur domain	3gzyA02
3.90.380.10	Alpha Beta	Alpha-Beta Complex	Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1	Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1	3gzyA01

1O7MA 4HJLA 4HM8A 1O7NA 4NBDD 4P1CH 5CXMA 4NBEA 1SQVE 3L71E 4NB9D 1BCCE 2D2CD 4PD4E 1WW9A 1RIEA 1ZRTE 3FOUA 3VMIA 1G8KB 1O7GA 3GCEA 4HM2A 3VMGA 4AAYB 2NVGA 2QPZA 4HM6A 2XRXA 2E76D 2YIUC 4NB9A 1KYOE 4HM4A 1L0NE 4NBBD 2HMMA 2A06E 3L75E 2ZYLA 3N0QA 5KKZC 2DE5D 3CX5E 3GKEA 2HMOA 2XSOA 2HMKA 3H1HE 3H1LE 3VMHD 2BMOA 2DE7A 2JZAA 3BCCE 1ULIA 3L74E 1Z03A 1NTZE 4HM5A 1JM1A 1SQBE 1WQLA 5BOKA 5KLVE 4OGQD 3GOBA 4NBGD 4QDDA 1VF5D 3H1JE 3CXHE 4NBHD 4H44D 4NBCD 4P1BH 2DE5A 2DE6A 3TGUE 3GZXA 1UUWA 3L73E 3GL0A 3L70E 4QDCA 1G8JB 4QUQA 5KLIC 3VMHA 4QDFB 4NBDA 2JO6A 1NDOA 4NBGA 2E74D 1O7WA 2B1XA 4NBAD 4U3FE 1Z01A 3GTEA 4NBFD 2E75D 1SQPE 3VCPA 4QURA 2FYUE 4H13D 3GB4A 1SQQE 2BCCE 1SJGA 2B24A 2BMRA 4HM3A 2NUKA 1NU1E 4AIVA 2YFJA 4HM7A 1NTME 4NBBA 4HM0A 2YFLA 3L72E 2I7FA 1NYKA 2QJPC 3GCFA 4NBFA 3CWBE 2XR8A 2BMQA 2HMNA 3H1IE 4QCKA 1EZVE 4NBED 3EQQA 3AZCA 1SQXE 3GKQA 1KB9E 1VM9A 4HM1A 2GBWA 2YFIA 4NBCA 4NBHA 3EN1A 2NWFA 3VMID 1RFSA 1PP9E 2QJKC 5AEWA 1BE3E 2XSHA 2E4PA 4QUPA 3C0DA 2YVJB 4PV1D 2Q3WA 3GL2A 3D89A 4NBAA 2NVEA 3GZYA 3VCAA 4HKVA 5AEUA 1NTKE 1P84E 1EG9A 4H0LD 2CKFA 3H1KE 2HMJA 3GTSA 4NB8D 2IBZE 1O7PA 2FYNC 2DE7D 2HMLA 1UUVA 1FQTA 2ZT9D 2QJYC 2E4QA 1VCKA 1L0LE 1Z02A 4EMJB 1PPJE 5HL4A 2NVFA 2GBXA 4QDFA 2DE6D 2NUMA 3DQYA 1Q90C 4NB8A 1O7HA 1ULJA 3VMGD
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 1O7M A;  4HJL A;  4HM8 A;  1O7N A;  4NBD D;  4P1C H;  5CXM A;  4NBE A;  1SQV E;  3L71 E;  4NB9 D;  1BCC E;  2D2C D;  4PD4 E;  1WW9 A;  1RIE A;  1ZRT E;  3FOU A;  3VMI A;  1G8K B;  1O7G A;  3GCE A;  4HM2 A;  3VMG A;  4AAY B;  2NVG A;  2QPZ A;  4HM6 A;  2XRX A;  2E76 D;  2YIU C;  4NB9 A;  1KYO E;  4HM4 A;  1L0N E;  4NBB D;  2HMM A;  2A06 E;  3L75 E;  2ZYL A;  3N0Q A;  5KKZ C;  2DE5 D;  3CX5 E;  3GKE A;  2HMO A;  2XSO A;  2HMK A;  3H1H E;  3H1L E;  3VMH D;  2BMO A;  2DE7 A;  2JZA A;  3BCC E;  1ULI A;  3L74 E;  1Z03 A;  1NTZ E;  4HM5 A;  1JM1 A;  1SQB E;  1WQL A;  5BOK A;  5KLV E;  4OGQ D;  3GOB A;  4NBG D;  4QDD A;  1VF5 D;  3H1J E;  3CXH E;  4NBH D;  4H44 D;  4NBC D;  4P1B H;  2DE5 A;  2DE6 A;  3TGU E;  3GZX A;  1UUW A;  3L73 E;  3GL0 A;  3L70 E;  4QDC A;  1G8J B;  4QUQ A;  5KLI C;  3VMH A;  4QDF B;  4NBD A;  2JO6 A;  1NDO A;  4NBG A;  2E74 D;  1O7W A;  2B1X A;  4NBA D;  4U3F E;  1Z01 A;  3GTE A;  4NBF D;  2E75 D;  1SQP E;  3VCP A;  4QUR A;  2FYU E;  4H13 D;  3GB4 A;  1SQQ E;  2BCC E;  1SJG A;  2B24 A;  2BMR A;  4HM3 A;  2NUK A;  1NU1 E;  4AIV A;  2YFJ A;  4HM7 A;  1NTM E;  4NBB A;  4HM0 A;  2YFL A;  3L72 E;  2I7F A;  1NYK A;  2QJP C;  3GCF A;  4NBF A;  3CWB E;  2XR8 A;  2BMQ A;  2HMN A;  3H1I E;  4QCK A;  1EZV E;  4NBE D;  3EQQ A;  3AZC A;  1SQX E;  3GKQ A;  1KB9 E;  1VM9 A;  4HM1 A;  2GBW A;  2YFI A;  4NBC A;  4NBH A;  3EN1 A;  2NWF A;  3VMI D;  1RFS A;  1PP9 E;  2QJK C;  5AEW A;  1BE3 E;  2XSH A;  2E4P A;  4QUP A;  3C0D A;  2YVJ B;  4PV1 D;  2Q3W A;  3GL2 A;  3D89 A;  4NBA A;  2NVE A;  3GZY A;  3VCA A;  4HKV A;  5AEU A;  1NTK E;  1P84 E;  1EG9 A;  4H0L D;  2CKF A;  3H1K E;  2HMJ A;  3GTS A;  4NB8 D;  2IBZ E;  1O7P A;  2FYN C;  2DE7 D;  2HML A;  1UUV A;  1FQT A;  2ZT9 D;  2QJY C;  2E4Q A;  1VCK A;  1L0L E;  1Z02 A;  4EMJ B;  1PPJ E;  5HL4 A;  2NVF A;  2GBX A;  4QDF A;  2DE6 D;  2NUM A;  3DQY A;  1Q90 C;  4NB8 A;  1O7H A;  1ULJ A;  3VMG D; 
#chains in the Genus database with same CATH topology
 1O7M A;  4HJL A;  4HM8 A;  1O7N A;  4NBD D;  4P1C H;  5CXM A;  4NBE A;  1SQV E;  3L71 E;  4NB9 D;  1BCC E;  2D2C D;  4PD4 E;  1WW9 A;  1RIE A;  1ZRT E;  3FOU A;  3VMI A;  1G8K B;  1O7G A;  3GCE A;  4HM2 A;  3VMG A;  4AAY B;  2NVG A;  2QPZ A;  4HM6 A;  2XRX A;  2E76 D;  2YIU C;  4NB9 A;  1KYO E;  4HM4 A;  1L0N E;  4NBB D;  2HMM A;  2A06 E;  3L75 E;  2ZYL A;  3N0Q A;  5KKZ C;  2DE5 D;  3CX5 E;  3GKE A;  2HMO A;  2XSO A;  2HMK A;  3H1H E;  3H1L E;  3VMH D;  2BMO A;  2DE7 A;  2JZA A;  3BCC E;  1ULI A;  3L74 E;  1Z03 A;  1NTZ E;  4HM5 A;  1JM1 A;  1SQB E;  1WQL A;  5BOK A;  5KLV E;  4OGQ D;  3GOB A;  4NBG D;  4QDD A;  1VF5 D;  3H1J E;  3CXH E;  4NBH D;  4H44 D;  4NBC D;  4P1B H;  2DE5 A;  2DE6 A;  3TGU E;  3GZX A;  1UUW A;  3L73 E;  3GL0 A;  3L70 E;  4QDC A;  1G8J B;  4QUQ A;  5KLI C;  3VMH A;  4QDF B;  4NBD A;  2JO6 A;  1NDO A;  4NBG A;  2E74 D;  1O7W A;  2B1X A;  4NBA D;  4U3F E;  1Z01 A;  3GTE A;  4NBF D;  2E75 D;  1SQP E;  3VCP A;  4QUR A;  2FYU E;  4H13 D;  3GB4 A;  1SQQ E;  2BCC E;  1SJG A;  2B24 A;  2BMR A;  4HM3 A;  2NUK A;  1NU1 E;  4AIV A;  2YFJ A;  4HM7 A;  1NTM E;  4NBB A;  4HM0 A;  2YFL A;  3L72 E;  2I7F A;  1NYK A;  2QJP C;  3GCF A;  4NBF A;  3CWB E;  2XR8 A;  2BMQ A;  2HMN A;  3H1I E;  4QCK A;  1EZV E;  4NBE D;  3EQQ A;  3AZC A;  1SQX E;  3GKQ A;  1KB9 E;  1VM9 A;  4HM1 A;  2GBW A;  2YFI A;  4NBC A;  4NBH A;  3EN1 A;  2NWF A;  3VMI D;  1RFS A;  1PP9 E;  2QJK C;  5AEW A;  1BE3 E;  2XSH A;  2E4P A;  4QUP A;  3C0D A;  2YVJ B;  4PV1 D;  2Q3W A;  3GL2 A;  3D89 A;  4NBA A;  2NVE A;  3GZY A;  3VCA A;  4HKV A;  5AEU A;  1NTK E;  1P84 E;  1EG9 A;  4H0L D;  2CKF A;  3H1K E;  2HMJ A;  3GTS A;  4NB8 D;  2IBZ E;  1O7P A;  2FYN C;  2DE7 D;  2HML A;  1UUV A;  1FQT A;  2ZT9 D;  2QJY C;  2E4Q A;  1VCK A;  1L0L E;  1Z02 A;  4EMJ B;  1PPJ E;  5HL4 A;  2NVF A;  2GBX A;  4QDF A;  2DE6 D;  2NUM A;  3DQY A;  1Q90 C;  4NB8 A;  1O7H A;  1ULJ A;  3VMG D; 
#chains in the Genus database with same CATH homology
 1O7M A;  4HJL A;  4HM8 A;  1O7N A;  4NBD D;  4P1C H;  5CXM A;  4NBE A;  1SQV E;  3L71 E;  4NB9 D;  1BCC E;  2D2C D;  4PD4 E;  1WW9 A;  1RIE A;  1ZRT E;  3FOU A;  3VMI A;  1G8K B;  1O7G A;  3GCE A;  4HM2 A;  3VMG A;  4AAY B;  2NVG A;  2QPZ A;  4HM6 A;  2XRX A;  2E76 D;  2YIU C;  4NB9 A;  1KYO E;  4HM4 A;  1L0N E;  4NBB D;  2HMM A;  2A06 E;  3L75 E;  2ZYL A;  3N0Q A;  5KKZ C;  2DE5 D;  3CX5 E;  3GKE A;  2HMO A;  2XSO A;  2HMK A;  3H1H E;  3H1L E;  3VMH D;  2BMO A;  2DE7 A;  2JZA A;  3BCC E;  1ULI A;  3L74 E;  1Z03 A;  1NTZ E;  4HM5 A;  1JM1 A;  1SQB E;  1WQL A;  5BOK A;  5KLV E;  4OGQ D;  3GOB A;  4NBG D;  4QDD A;  1VF5 D;  3H1J E;  3CXH E;  4NBH D;  4H44 D;  4NBC D;  4P1B H;  2DE5 A;  2DE6 A;  3TGU E;  3GZX A;  1UUW A;  3L73 E;  3GL0 A;  3L70 E;  4QDC A;  1G8J B;  4QUQ A;  5KLI C;  3VMH A;  4QDF B;  4NBD A;  2JO6 A;  1NDO A;  4NBG A;  2E74 D;  1O7W A;  2B1X A;  4NBA D;  4U3F E;  1Z01 A;  3GTE A;  4NBF D;  2E75 D;  1SQP E;  3VCP A;  4QUR A;  2FYU E;  4H13 D;  3GB4 A;  1SQQ E;  2BCC E;  1SJG A;  2B24 A;  2BMR A;  4HM3 A;  2NUK A;  1NU1 E;  4AIV A;  2YFJ A;  4HM7 A;  1NTM E;  4NBB A;  4HM0 A;  2YFL A;  3L72 E;  2I7F A;  1NYK A;  2QJP C;  3GCF A;  4NBF A;  3CWB E;  2XR8 A;  2BMQ A;  2HMN A;  3H1I E;  4QCK A;  1EZV E;  4NBE D;  3EQQ A;  3AZC A;  1SQX E;  3GKQ A;  1KB9 E;  1VM9 A;  4HM1 A;  2GBW A;  2YFI A;  4NBC A;  4NBH A;  3EN1 A;  2NWF A;  3VMI D;  1RFS A;  1PP9 E;  2QJK C;  5AEW A;  1BE3 E;  2XSH A;  2E4P A;  4QUP A;  3C0D A;  2YVJ B;  4PV1 D;  2Q3W A;  3GL2 A;  3D89 A;  4NBA A;  2NVE A;  3GZY A;  3VCA A;  4HKV A;  5AEU A;  1NTK E;  1P84 E;  1EG9 A;  4H0L D;  2CKF A;  3H1K E;  2HMJ A;  3GTS A;  4NB8 D;  2IBZ E;  1O7P A;  2FYN C;  2DE7 D;  2HML A;  1UUV A;  1FQT A;  2ZT9 D;  2QJY C;  2E4Q A;  1VCK A;  1L0L E;  1Z02 A;  4EMJ B;  1PPJ E;  5HL4 A;  2NVF A;  2GBX A;  4QDF A;  2DE6 D;  2NUM A;  3DQY A;  1Q90 C;  4NB8 A;  1O7H A;  1ULJ A;  3VMG D;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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3GZYA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

pfam database annotations