3VMGD

Reduced carbazole-bound complex between oxygenase and ferredoxin in carbazole 1,9a-dioxygenase
Total Genus 19

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
19
sequence length
104
structure length
104
Chain Sequence
IWLKVCAASDMQPGTIRRVNRVGAAPLAVYRVGDQFYATEDTCTHGIASLSEGTLDGDVIECPFHGGAFNVCTGMPASSPCTVPLGVFEVEVKEGEVYVAGEKK

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
S1 (5-10)TI1 (10-13)S9 (91-96)TII1 (15-18)S3 (27-35)TI2 (11-14)S2 (18-24)TII2 (24-27)S4 (38-43)TIV1 (34-37)EMPTYTVIa1 (81-84)3H1 (53-55)TIV2 (58-61)S5 (57-59)S7 (71-73)TI4 (66-69)TI6 (74-77)TIV3 (65-68)TI5 (73-76)TIV4 (82-85)TIV5 (95-98)TI3 (46-49)S6 (62-64)S10 (99-106)Updating...
connected with : NaN
molecule tags Oxidoreductase
source organism Janthinobacterium
publication title Structural insight into the substrate- and dioxygenbinding manner in the catalytic cycle of rieske nonheme iron oxygenase system, carbazole 1,9adioxygenase
pubmed doi rcsb
molecule keywords Terminal oxygenase component of carbazole
total genus 19
structure length 104
sequence length 104
chains with identical sequence E, F
ec nomenclature ec 1.14.12.22: Carbazole 1,9a-dioxygenase.
pdb deposition date 2011-12-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
D PF00355 Rieske Rieske [2Fe-2S] domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 3vmgD00
3FOUA 4QDCA 2GBXA 3L73E 2E76D 4PD4E 1EG9A 2FYUE 3H1KE 1SQPE 1L0LE 4HM7A 3EN1A 1G8KB 3D89A 3GTSA 4H13D 3VCPA 2HMOA 2E75D 4HM6A 2HMNA 4U3FE 3BCCE 3C0DA 1ULJA 4HJLA 1O7WA 3AZCA 5BOKA 1RIEA 2FYNC 2NVFA 1EZVE 3GB4A 1PPJE 2IBZE 3EQQA 4NBAD 2ZT9D 2NUKA 2XSOA 1KB9E 5HL4A 2JZAA 2NWFA 1O7PA 1ZRTE 1KYOE 2DE5D 1SQQE 2BMOA 3TGUE 2XR8A 2XSHA 2XRXA 3H1LE 3N0QA 4QDFB 4QURA 2YFLA 2YFIA 2HMLA 3VCAA 2DE6D 2QJPC 4NBFD 2HMMA 4PV1D 1L0NE 2NVGA 3H1IE 1RFSA 4AAYB 4NBHD 4HM4A 4NBGD 4NBBD 4P1CH 3VMHD 1VM9A 2HMJA 3L70E 1SQBE 2QPZA 4AIVA 4HKVA 2YIUC 4HM1A 4HM5A 1NU1E 2D2CD 4QUQA 5KLIC 5AEUA 2B1XA 2GBWA 4H44D 1NTME 1NTKE 4NB8D 3GOBA 3CX5E 1G8JB 3GCEA 1NYKA 2YFJA 3L74E 4NBDD 2B24A 1VF5D 4P1BH 2BCCE 1SQXE 1NTZE 1SQVE 1WQLA 1NDOA 3GKEA 4HM3A 1O7GA 4NBED 4QCKA 3L71E 2Q3WA 2NVEA 2A06E 4OGQD 3GL0A 1JM1A 1O7MA 5KKZC 1Q90C 2E4QA 3GZXA 4HM0A 4NB9D 1UUWA 2CKFA 2E74D 2BMQA 1O7HA 1ULIA 3L72E 3CWBE 1VCKA 3CXHE 3VMID 4QUPA 4H0LD 2ZYLA 3H1HE 1PP9E 2QJKC 3H1JE 2DE7D 1FQTA 4HM8A 4QDDA 1BCCE 1BE3E 4HM2A 5KLVE 3GL2A 3GTEA 2NUMA 3VMGD 2YVJB 3DQYA 5AEWA 2E4PA 1P84E 5CXMA 1UUVA 2JO6A 1O7NA 2HMKA 2QJYC 3L75E 3GZYA 2BMRA 1SJGA 4EMJB 4NBCD 2I7FA 4QDFA
chains in the Genus database with same CATH superfamily
3FOUA 4QDCA 2GBXA 3L73E 2E76D 4PD4E 1EG9A 2FYUE 3H1KE 1SQPE 1L0LE 4HM7A 3EN1A 1G8KB 3D89A 3GTSA 4H13D 3VCPA 2HMOA 2E75D 4HM6A 2HMNA 4U3FE 3BCCE 3C0DA 1ULJA 4HJLA 1O7WA 3AZCA 5BOKA 1RIEA 2FYNC 2NVFA 1EZVE 3GB4A 1PPJE 2IBZE 3EQQA 4NBAD 2ZT9D 2NUKA 2XSOA 1KB9E 5HL4A 2JZAA 2NWFA 1O7PA 1ZRTE 1KYOE 2DE5D 1SQQE 2BMOA 3TGUE 2XR8A 2XSHA 2XRXA 3H1LE 3N0QA 4QDFB 4QURA 2YFLA 2YFIA 2HMLA 3VCAA 2DE6D 2QJPC 4NBFD 2HMMA 4PV1D 1L0NE 2NVGA 3H1IE 1RFSA 4AAYB 4NBHD 4HM4A 4NBGD 4NBBD 4P1CH 3VMHD 1VM9A 2HMJA 3L70E 1SQBE 2QPZA 4AIVA 4HKVA 2YIUC 4HM1A 4HM5A 1NU1E 2D2CD 4QUQA 5KLIC 5AEUA 2B1XA 2GBWA 4H44D 1NTME 1NTKE 4NB8D 3GOBA 3CX5E 1G8JB 3GCEA 1NYKA 2YFJA 3L74E 4NBDD 2B24A 1VF5D 4P1BH 2BCCE 1SQXE 1NTZE 1SQVE 1WQLA 1NDOA 3GKEA 4HM3A 1O7GA 4NBED 4QCKA 3L71E 2Q3WA 2NVEA 2A06E 4OGQD 3GL0A 1JM1A 1O7MA 5KKZC 1Q90C 2E4QA 3GZXA 4HM0A 4NB9D 1UUWA 2CKFA 2E74D 2BMQA 1O7HA 1ULIA 3L72E 3CWBE 1VCKA 3CXHE 3VMID 4QUPA 4H0LD 2ZYLA 3H1HE 1PP9E 2QJKC 3H1JE 2DE7D 1FQTA 4HM8A 4QDDA 1BCCE 1BE3E 4HM2A 5KLVE 3GL2A 3GTEA 2NUMA 3VMGD 2YVJB 3DQYA 5AEWA 2E4PA 1P84E 5CXMA 1UUVA 2JO6A 1O7NA 2HMKA 2QJYC 3L75E 3GZYA 2BMRA 1SJGA 4EMJB 4NBCD 2I7FA 4QDFA
chains in the Genus database with same CATH topology
3FOUA 4QDCA 2GBXA 3L73E 2E76D 4PD4E 1EG9A 2FYUE 3H1KE 1SQPE 1L0LE 4HM7A 3EN1A 1G8KB 3D89A 3GTSA 4H13D 3VCPA 2HMOA 2E75D 4HM6A 2HMNA 4U3FE 3BCCE 3C0DA 1ULJA 4HJLA 1O7WA 3AZCA 5BOKA 1RIEA 2FYNC 2NVFA 1EZVE 3GB4A 1PPJE 2IBZE 3EQQA 4NBAD 2ZT9D 2NUKA 2XSOA 1KB9E 5HL4A 2JZAA 2NWFA 1O7PA 1ZRTE 1KYOE 2DE5D 1SQQE 2BMOA 3TGUE 2XR8A 2XSHA 2XRXA 3H1LE 3N0QA 4QDFB 4QURA 2YFLA 2YFIA 2HMLA 3VCAA 2DE6D 2QJPC 4NBFD 2HMMA 4PV1D 1L0NE 2NVGA 3H1IE 1RFSA 4AAYB 4NBHD 4HM4A 4NBGD 4NBBD 4P1CH 3VMHD 1VM9A 2HMJA 3L70E 1SQBE 2QPZA 4AIVA 4HKVA 2YIUC 4HM1A 4HM5A 1NU1E 2D2CD 4QUQA 5KLIC 5AEUA 2B1XA 2GBWA 4H44D 1NTME 1NTKE 4NB8D 3GOBA 3CX5E 1G8JB 3GCEA 1NYKA 2YFJA 3L74E 4NBDD 2B24A 1VF5D 4P1BH 2BCCE 1SQXE 1NTZE 1SQVE 1WQLA 1NDOA 3GKEA 4HM3A 1O7GA 4NBED 4QCKA 3L71E 2Q3WA 2NVEA 2A06E 4OGQD 3GL0A 1JM1A 1O7MA 5KKZC 1Q90C 2E4QA 3GZXA 4HM0A 4NB9D 1UUWA 2CKFA 2E74D 2BMQA 1O7HA 1ULIA 3L72E 3CWBE 1VCKA 3CXHE 3VMID 4QUPA 4H0LD 2ZYLA 3H1HE 1PP9E 2QJKC 3H1JE 2DE7D 1FQTA 4HM8A 4QDDA 1BCCE 1BE3E 4HM2A 5KLVE 3GL2A 3GTEA 2NUMA 3VMGD 2YVJB 3DQYA 5AEWA 2E4PA 1P84E 5CXMA 1UUVA 2JO6A 1O7NA 2HMKA 2QJYC 3L75E 3GZYA 2BMRA 1SJGA 4EMJB 4NBCD 2I7FA 4QDFA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3FOU A;  4QDC A;  2GBX A;  3L73 E;  2E76 D;  4PD4 E;  1EG9 A;  2FYU E;  3H1K E;  1SQP E;  1L0L E;  4HM7 A;  3EN1 A;  1G8K B;  3D89 A;  3GTS A;  4H13 D;  3VCP A;  2HMO A;  2E75 D;  4HM6 A;  2HMN A;  4U3F E;  3BCC E;  3C0D A;  1ULJ A;  4HJL A;  1O7W A;  3AZC A;  5BOK A;  1RIE A;  2FYN C;  2NVF A;  1EZV E;  3GB4 A;  1PPJ E;  2IBZ E;  3EQQ A;  4NBA D;  2ZT9 D;  2NUK A;  2XSO A;  1KB9 E;  5HL4 A;  2JZA A;  2NWF A;  1O7P A;  1ZRT E;  1KYO E;  2DE5 D;  1SQQ E;  2BMO A;  3TGU E;  2XR8 A;  2XSH A;  2XRX A;  3H1L E;  3N0Q A;  4QDF B;  4QUR A;  2YFL A;  2YFI A;  2HML A;  3VCA A;  2DE6 D;  2QJP C;  4NBF D;  2HMM A;  4PV1 D;  1L0N E;  2NVG A;  3H1I E;  1RFS A;  4AAY B;  4NBH D;  4HM4 A;  4NBG D;  4NBB D;  4P1C H;  3VMH D;  1VM9 A;  2HMJ A;  3L70 E;  1SQB E;  2QPZ A;  4AIV A;  4HKV A;  2YIU C;  4HM1 A;  4HM5 A;  1NU1 E;  2D2C D;  4QUQ A;  5KLI C;  5AEU A;  2B1X A;  2GBW A;  4H44 D;  1NTM E;  1NTK E;  4NB8 D;  3GOB A;  3CX5 E;  1G8J B;  3GCE A;  1NYK A;  2YFJ A;  3L74 E;  4NBD D;  2B24 A;  1VF5 D;  4P1B H;  2BCC E;  1SQX E;  1NTZ E;  1SQV E;  1WQL A;  1NDO A;  3GKE A;  4HM3 A;  1O7G A;  4NBE D;  4QCK A;  3L71 E;  2Q3W A;  2NVE A;  2A06 E;  4OGQ D;  3GL0 A;  1JM1 A;  1O7M A;  5KKZ C;  1Q90 C;  2E4Q A;  3GZX A;  4HM0 A;  4NB9 D;  1UUW A;  2CKF A;  2E74 D;  2BMQ A;  1O7H A;  1ULI A;  3L72 E;  3CWB E;  1VCK A;  3CXH E;  3VMI D;  4QUP A;  4H0L D;  2ZYL A;  3H1H E;  1PP9 E;  2QJK C;  3H1J E;  2DE7 D;  1FQT A;  4HM8 A;  4QDD A;  1BCC E;  1BE3 E;  4HM2 A;  5KLV E;  3GL2 A;  3GTE A;  2NUM A;  3VMG D;  2YVJ B;  3DQY A;  5AEW A;  2E4P A;  1P84 E;  5CXM A;  1UUV A;  2JO6 A;  1O7N A;  2HMK A;  2QJY C;  3L75 E;  3GZY A;  2BMR A;  1SJG A;  4EMJ B;  4NBC D;  2I7F A;  4QDF A; 
#chains in the Genus database with same CATH topology
 3FOU A;  4QDC A;  2GBX A;  3L73 E;  2E76 D;  4PD4 E;  1EG9 A;  2FYU E;  3H1K E;  1SQP E;  1L0L E;  4HM7 A;  3EN1 A;  1G8K B;  3D89 A;  3GTS A;  4H13 D;  3VCP A;  2HMO A;  2E75 D;  4HM6 A;  2HMN A;  4U3F E;  3BCC E;  3C0D A;  1ULJ A;  4HJL A;  1O7W A;  3AZC A;  5BOK A;  1RIE A;  2FYN C;  2NVF A;  1EZV E;  3GB4 A;  1PPJ E;  2IBZ E;  3EQQ A;  4NBA D;  2ZT9 D;  2NUK A;  2XSO A;  1KB9 E;  5HL4 A;  2JZA A;  2NWF A;  1O7P A;  1ZRT E;  1KYO E;  2DE5 D;  1SQQ E;  2BMO A;  3TGU E;  2XR8 A;  2XSH A;  2XRX A;  3H1L E;  3N0Q A;  4QDF B;  4QUR A;  2YFL A;  2YFI A;  2HML A;  3VCA A;  2DE6 D;  2QJP C;  4NBF D;  2HMM A;  4PV1 D;  1L0N E;  2NVG A;  3H1I E;  1RFS A;  4AAY B;  4NBH D;  4HM4 A;  4NBG D;  4NBB D;  4P1C H;  3VMH D;  1VM9 A;  2HMJ A;  3L70 E;  1SQB E;  2QPZ A;  4AIV A;  4HKV A;  2YIU C;  4HM1 A;  4HM5 A;  1NU1 E;  2D2C D;  4QUQ A;  5KLI C;  5AEU A;  2B1X A;  2GBW A;  4H44 D;  1NTM E;  1NTK E;  4NB8 D;  3GOB A;  3CX5 E;  1G8J B;  3GCE A;  1NYK A;  2YFJ A;  3L74 E;  4NBD D;  2B24 A;  1VF5 D;  4P1B H;  2BCC E;  1SQX E;  1NTZ E;  1SQV E;  1WQL A;  1NDO A;  3GKE A;  4HM3 A;  1O7G A;  4NBE D;  4QCK A;  3L71 E;  2Q3W A;  2NVE A;  2A06 E;  4OGQ D;  3GL0 A;  1JM1 A;  1O7M A;  5KKZ C;  1Q90 C;  2E4Q A;  3GZX A;  4HM0 A;  4NB9 D;  1UUW A;  2CKF A;  2E74 D;  2BMQ A;  1O7H A;  1ULI A;  3L72 E;  3CWB E;  1VCK A;  3CXH E;  3VMI D;  4QUP A;  4H0L D;  2ZYL A;  3H1H E;  1PP9 E;  2QJK C;  3H1J E;  2DE7 D;  1FQT A;  4HM8 A;  4QDD A;  1BCC E;  1BE3 E;  4HM2 A;  5KLV E;  3GL2 A;  3GTE A;  2NUM A;  3VMG D;  2YVJ B;  3DQY A;  5AEW A;  2E4P A;  1P84 E;  5CXM A;  1UUV A;  2JO6 A;  1O7N A;  2HMK A;  2QJY C;  3L75 E;  3GZY A;  2BMR A;  1SJG A;  4EMJ B;  4NBC D;  2I7F A;  4QDF A; 
#chains in the Genus database with same CATH homology
 3FOU A;  4QDC A;  2GBX A;  3L73 E;  2E76 D;  4PD4 E;  1EG9 A;  2FYU E;  3H1K E;  1SQP E;  1L0L E;  4HM7 A;  3EN1 A;  1G8K B;  3D89 A;  3GTS A;  4H13 D;  3VCP A;  2HMO A;  2E75 D;  4HM6 A;  2HMN A;  4U3F E;  3BCC E;  3C0D A;  1ULJ A;  4HJL A;  1O7W A;  3AZC A;  5BOK A;  1RIE A;  2FYN C;  2NVF A;  1EZV E;  3GB4 A;  1PPJ E;  2IBZ E;  3EQQ A;  4NBA D;  2ZT9 D;  2NUK A;  2XSO A;  1KB9 E;  5HL4 A;  2JZA A;  2NWF A;  1O7P A;  1ZRT E;  1KYO E;  2DE5 D;  1SQQ E;  2BMO A;  3TGU E;  2XR8 A;  2XSH A;  2XRX A;  3H1L E;  3N0Q A;  4QDF B;  4QUR A;  2YFL A;  2YFI A;  2HML A;  3VCA A;  2DE6 D;  2QJP C;  4NBF D;  2HMM A;  4PV1 D;  1L0N E;  2NVG A;  3H1I E;  1RFS A;  4AAY B;  4NBH D;  4HM4 A;  4NBG D;  4NBB D;  4P1C H;  3VMH D;  1VM9 A;  2HMJ A;  3L70 E;  1SQB E;  2QPZ A;  4AIV A;  4HKV A;  2YIU C;  4HM1 A;  4HM5 A;  1NU1 E;  2D2C D;  4QUQ A;  5KLI C;  5AEU A;  2B1X A;  2GBW A;  4H44 D;  1NTM E;  1NTK E;  4NB8 D;  3GOB A;  3CX5 E;  1G8J B;  3GCE A;  1NYK A;  2YFJ A;  3L74 E;  4NBD D;  2B24 A;  1VF5 D;  4P1B H;  2BCC E;  1SQX E;  1NTZ E;  1SQV E;  1WQL A;  1NDO A;  3GKE A;  4HM3 A;  1O7G A;  4NBE D;  4QCK A;  3L71 E;  2Q3W A;  2NVE A;  2A06 E;  4OGQ D;  3GL0 A;  1JM1 A;  1O7M A;  5KKZ C;  1Q90 C;  2E4Q A;  3GZX A;  4HM0 A;  4NB9 D;  1UUW A;  2CKF A;  2E74 D;  2BMQ A;  1O7H A;  1ULI A;  3L72 E;  3CWB E;  1VCK A;  3CXH E;  3VMI D;  4QUP A;  4H0L D;  2ZYL A;  3H1H E;  1PP9 E;  2QJK C;  3H1J E;  2DE7 D;  1FQT A;  4HM8 A;  4QDD A;  1BCC E;  1BE3 E;  4HM2 A;  5KLV E;  3GL2 A;  3GTE A;  2NUM A;  3VMG D;  2YVJ B;  3DQY A;  5AEW A;  2E4P A;  1P84 E;  5CXM A;  1UUV A;  2JO6 A;  1O7N A;  2HMK A;  2QJY C;  3L75 E;  3GZY A;  2BMR A;  1SJG A;  4EMJ B;  4NBC D;  2I7F A;  4QDF A; 
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