3VMHD

Oxygen-bound complex between oxygenase and ferredoxin in carbazole 1,9a-dioxygenase
Total Genus 18

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
18
sequence length
104
structure length
104
Chain Sequence
IWLKVCAASDMQPGTIRRVNRVGAAPLAVYRVGDQFYATEDTCTHGIASLSEGTLDGDVIECPFHGGAFNVCTGMPASSPCTVPLGVFEVEVKEGEVYVAGEKK

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
S1 (5-10)S9 (91-96)S3 (27-35)TI1 (10-13)TII1 (15-18)TI2 (11-14)S2 (18-24)TII2 (24-27)S4 (38-43)TIV1 (34-37)EMPTYTVIa1 (81-84)3H1 (53-55)TIV2 (58-61)S5 (57-59)S7 (71-73)TIV4 (66-69)TI4 (74-77)TIV3 (65-68)TIV5 (73-76)TIV6 (95-98)TI3 (46-49)S6 (62-64)S10 (99-106)Updating...
connected with : NaN
molecule tags Oxidoreductase
source organism Janthinobacterium
publication title Structural insight into the substrate- and dioxygenbinding manner in the catalytic cycle of rieske nonheme iron oxygenase system, carbazole 1,9adioxygenase
pubmed doi rcsb
molecule keywords Terminal oxygenase component of carbazole
total genus 18
structure length 104
sequence length 104
chains with identical sequence E, F
ec nomenclature ec 1.14.12.22: Carbazole 1,9a-dioxygenase.
pdb deposition date 2011-12-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
D PF00355 Rieske Rieske [2Fe-2S] domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 3vmhD00
5BOKA 1O7MA 5KLIC 1VF5D 5KKZC 1ZRTE 1SQBE 4NBFD 3L74E 2IBZE 5CXMA 2E4PA 3VCPA 2QJYC 4HM2A 1L0LE 3N0QA 2HMJA 2QJKC 4H44D 3CXHE 1PP9E 2BCCE 1P84E 4HM5A 4NBBD 2ZYLA 1SQVE 4NBHD 4NBDD 3VCAA 3AZCA 2YVJB 1RIEA 1BCCE 2HMNA 2CKFA 2E76D 3GZXA 2FYUE 3VMGD 4P1CH 3L73E 3GZYA 4HM4A 3DQYA 4HM6A 1O7NA 1NTKE 2XSHA 3FOUA 2HMMA 4QDFA 3L72E 1O7PA 1NU1E 1RFSA 4NBCD 2DE6D 2E74D 4QUPA 2B24A 4HM7A 3VMHD 1UUWA 4HM3A 3H1IE 3GTSA 2HMLA 1UUVA 3H1HE 1BE3E 1O7WA 4NB8D 4QURA 1L0NE 5AEUA 4QCKA 2JZAA 3BCCE 1VM9A 3GL2A 1O7GA 3GCEA 2B1XA 1EG9A 4EMJB 4NBGD 2E75D 1NDOA 2I7FA 3H1JE 4AIVA 5HL4A 1PPJE 2YFIA 4H0LD 3CWBE 3L71E 2QPZA 2DE7D 2HMKA 2ZT9D 1SQQE 2XR8A 3H1KE 4PV1D 3GTEA 3EN1A 2HMOA 1NTZE 1VCKA 5AEWA 2A06E 3CX5E 2XSOA 2YFJA 5KLVE 1SQPE 1FQTA 2NWFA 3TGUE 1NYKA 4HJLA 1G8JB 4OGQD 3GL0A 1KYOE 3C0DA 4HKVA 1O7HA 2E4QA 2DE5D 2NVFA 2YFLA 2YIUC 2BMRA 1Q90C 3H1LE 2FYNC 4P1BH 3GOBA 1WQLA 4NB9D 1SJGA 2BMQA 2NUMA 4PD4E 1KB9E 2NUKA 3D89A 4NBED 2D2CD 2XRXA 2NVGA 3VMID 1ULIA 4AAYB 2QJPC 1ULJA 4QDDA 4HM0A 4HM8A 4NBAD 3L75E 2NVEA 2JO6A 3EQQA 4U3FE 2GBWA 4QDCA 1EZVE 1SQXE 4QDFB 3GB4A 3L70E 4HM1A 2Q3WA 1G8KB 1JM1A 4H13D 2BMOA 1NTME 3GKEA 4QUQA 2GBXA
chains in the Genus database with same CATH superfamily
5BOKA 1O7MA 5KLIC 1VF5D 5KKZC 1ZRTE 1SQBE 4NBFD 3L74E 2IBZE 5CXMA 2E4PA 3VCPA 2QJYC 4HM2A 1L0LE 3N0QA 2HMJA 2QJKC 4H44D 3CXHE 1PP9E 2BCCE 1P84E 4HM5A 4NBBD 2ZYLA 1SQVE 4NBHD 4NBDD 3VCAA 3AZCA 2YVJB 1RIEA 1BCCE 2HMNA 2CKFA 2E76D 3GZXA 2FYUE 3VMGD 4P1CH 3L73E 3GZYA 4HM4A 3DQYA 4HM6A 1O7NA 1NTKE 2XSHA 3FOUA 2HMMA 4QDFA 3L72E 1O7PA 1NU1E 1RFSA 4NBCD 2DE6D 2E74D 4QUPA 2B24A 4HM7A 3VMHD 1UUWA 4HM3A 3H1IE 3GTSA 2HMLA 1UUVA 3H1HE 1BE3E 1O7WA 4NB8D 4QURA 1L0NE 5AEUA 4QCKA 2JZAA 3BCCE 1VM9A 3GL2A 1O7GA 3GCEA 2B1XA 1EG9A 4EMJB 4NBGD 2E75D 1NDOA 2I7FA 3H1JE 4AIVA 5HL4A 1PPJE 2YFIA 4H0LD 3CWBE 3L71E 2QPZA 2DE7D 2HMKA 2ZT9D 1SQQE 2XR8A 3H1KE 4PV1D 3GTEA 3EN1A 2HMOA 1NTZE 1VCKA 5AEWA 2A06E 3CX5E 2XSOA 2YFJA 5KLVE 1SQPE 1FQTA 2NWFA 3TGUE 1NYKA 4HJLA 1G8JB 4OGQD 3GL0A 1KYOE 3C0DA 4HKVA 1O7HA 2E4QA 2DE5D 2NVFA 2YFLA 2YIUC 2BMRA 1Q90C 3H1LE 2FYNC 4P1BH 3GOBA 1WQLA 4NB9D 1SJGA 2BMQA 2NUMA 4PD4E 1KB9E 2NUKA 3D89A 4NBED 2D2CD 2XRXA 2NVGA 3VMID 1ULIA 4AAYB 2QJPC 1ULJA 4QDDA 4HM0A 4HM8A 4NBAD 3L75E 2NVEA 2JO6A 3EQQA 4U3FE 2GBWA 4QDCA 1EZVE 1SQXE 4QDFB 3GB4A 3L70E 4HM1A 2Q3WA 1G8KB 1JM1A 4H13D 2BMOA 1NTME 3GKEA 4QUQA 2GBXA
chains in the Genus database with same CATH topology
5BOKA 1O7MA 5KLIC 1VF5D 5KKZC 1ZRTE 1SQBE 4NBFD 3L74E 2IBZE 5CXMA 2E4PA 3VCPA 2QJYC 4HM2A 1L0LE 3N0QA 2HMJA 2QJKC 4H44D 3CXHE 1PP9E 2BCCE 1P84E 4HM5A 4NBBD 2ZYLA 1SQVE 4NBHD 4NBDD 3VCAA 3AZCA 2YVJB 1RIEA 1BCCE 2HMNA 2CKFA 2E76D 3GZXA 2FYUE 3VMGD 4P1CH 3L73E 3GZYA 4HM4A 3DQYA 4HM6A 1O7NA 1NTKE 2XSHA 3FOUA 2HMMA 4QDFA 3L72E 1O7PA 1NU1E 1RFSA 4NBCD 2DE6D 2E74D 4QUPA 2B24A 4HM7A 3VMHD 1UUWA 4HM3A 3H1IE 3GTSA 2HMLA 1UUVA 3H1HE 1BE3E 1O7WA 4NB8D 4QURA 1L0NE 5AEUA 4QCKA 2JZAA 3BCCE 1VM9A 3GL2A 1O7GA 3GCEA 2B1XA 1EG9A 4EMJB 4NBGD 2E75D 1NDOA 2I7FA 3H1JE 4AIVA 5HL4A 1PPJE 2YFIA 4H0LD 3CWBE 3L71E 2QPZA 2DE7D 2HMKA 2ZT9D 1SQQE 2XR8A 3H1KE 4PV1D 3GTEA 3EN1A 2HMOA 1NTZE 1VCKA 5AEWA 2A06E 3CX5E 2XSOA 2YFJA 5KLVE 1SQPE 1FQTA 2NWFA 3TGUE 1NYKA 4HJLA 1G8JB 4OGQD 3GL0A 1KYOE 3C0DA 4HKVA 1O7HA 2E4QA 2DE5D 2NVFA 2YFLA 2YIUC 2BMRA 1Q90C 3H1LE 2FYNC 4P1BH 3GOBA 1WQLA 4NB9D 1SJGA 2BMQA 2NUMA 4PD4E 1KB9E 2NUKA 3D89A 4NBED 2D2CD 2XRXA 2NVGA 3VMID 1ULIA 4AAYB 2QJPC 1ULJA 4QDDA 4HM0A 4HM8A 4NBAD 3L75E 2NVEA 2JO6A 3EQQA 4U3FE 2GBWA 4QDCA 1EZVE 1SQXE 4QDFB 3GB4A 3L70E 4HM1A 2Q3WA 1G8KB 1JM1A 4H13D 2BMOA 1NTME 3GKEA 4QUQA 2GBXA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5BOK A;  1O7M A;  5KLI C;  1VF5 D;  5KKZ C;  1ZRT E;  1SQB E;  4NBF D;  3L74 E;  2IBZ E;  5CXM A;  2E4P A;  3VCP A;  2QJY C;  4HM2 A;  1L0L E;  3N0Q A;  2HMJ A;  2QJK C;  4H44 D;  3CXH E;  1PP9 E;  2BCC E;  1P84 E;  4HM5 A;  4NBB D;  2ZYL A;  1SQV E;  4NBH D;  4NBD D;  3VCA A;  3AZC A;  2YVJ B;  1RIE A;  1BCC E;  2HMN A;  2CKF A;  2E76 D;  3GZX A;  2FYU E;  3VMG D;  4P1C H;  3L73 E;  3GZY A;  4HM4 A;  3DQY A;  4HM6 A;  1O7N A;  1NTK E;  2XSH A;  3FOU A;  2HMM A;  4QDF A;  3L72 E;  1O7P A;  1NU1 E;  1RFS A;  4NBC D;  2DE6 D;  2E74 D;  4QUP A;  2B24 A;  4HM7 A;  3VMH D;  1UUW A;  4HM3 A;  3H1I E;  3GTS A;  2HML A;  1UUV A;  3H1H E;  1BE3 E;  1O7W A;  4NB8 D;  4QUR A;  1L0N E;  5AEU A;  4QCK A;  2JZA A;  3BCC E;  1VM9 A;  3GL2 A;  1O7G A;  3GCE A;  2B1X A;  1EG9 A;  4EMJ B;  4NBG D;  2E75 D;  1NDO A;  2I7F A;  3H1J E;  4AIV A;  5HL4 A;  1PPJ E;  2YFI A;  4H0L D;  3CWB E;  3L71 E;  2QPZ A;  2DE7 D;  2HMK A;  2ZT9 D;  1SQQ E;  2XR8 A;  3H1K E;  4PV1 D;  3GTE A;  3EN1 A;  2HMO A;  1NTZ E;  1VCK A;  5AEW A;  2A06 E;  3CX5 E;  2XSO A;  2YFJ A;  5KLV E;  1SQP E;  1FQT A;  2NWF A;  3TGU E;  1NYK A;  4HJL A;  1G8J B;  4OGQ D;  3GL0 A;  1KYO E;  3C0D A;  4HKV A;  1O7H A;  2E4Q A;  2DE5 D;  2NVF A;  2YFL A;  2YIU C;  2BMR A;  1Q90 C;  3H1L E;  2FYN C;  4P1B H;  3GOB A;  1WQL A;  4NB9 D;  1SJG A;  2BMQ A;  2NUM A;  4PD4 E;  1KB9 E;  2NUK A;  3D89 A;  4NBE D;  2D2C D;  2XRX A;  2NVG A;  3VMI D;  1ULI A;  4AAY B;  2QJP C;  1ULJ A;  4QDD A;  4HM0 A;  4HM8 A;  4NBA D;  3L75 E;  2NVE A;  2JO6 A;  3EQQ A;  4U3F E;  2GBW A;  4QDC A;  1EZV E;  1SQX E;  4QDF B;  3GB4 A;  3L70 E;  4HM1 A;  2Q3W A;  1G8K B;  1JM1 A;  4H13 D;  2BMO A;  1NTM E;  3GKE A;  4QUQ A;  2GBX A; 
#chains in the Genus database with same CATH topology
 5BOK A;  1O7M A;  5KLI C;  1VF5 D;  5KKZ C;  1ZRT E;  1SQB E;  4NBF D;  3L74 E;  2IBZ E;  5CXM A;  2E4P A;  3VCP A;  2QJY C;  4HM2 A;  1L0L E;  3N0Q A;  2HMJ A;  2QJK C;  4H44 D;  3CXH E;  1PP9 E;  2BCC E;  1P84 E;  4HM5 A;  4NBB D;  2ZYL A;  1SQV E;  4NBH D;  4NBD D;  3VCA A;  3AZC A;  2YVJ B;  1RIE A;  1BCC E;  2HMN A;  2CKF A;  2E76 D;  3GZX A;  2FYU E;  3VMG D;  4P1C H;  3L73 E;  3GZY A;  4HM4 A;  3DQY A;  4HM6 A;  1O7N A;  1NTK E;  2XSH A;  3FOU A;  2HMM A;  4QDF A;  3L72 E;  1O7P A;  1NU1 E;  1RFS A;  4NBC D;  2DE6 D;  2E74 D;  4QUP A;  2B24 A;  4HM7 A;  3VMH D;  1UUW A;  4HM3 A;  3H1I E;  3GTS A;  2HML A;  1UUV A;  3H1H E;  1BE3 E;  1O7W A;  4NB8 D;  4QUR A;  1L0N E;  5AEU A;  4QCK A;  2JZA A;  3BCC E;  1VM9 A;  3GL2 A;  1O7G A;  3GCE A;  2B1X A;  1EG9 A;  4EMJ B;  4NBG D;  2E75 D;  1NDO A;  2I7F A;  3H1J E;  4AIV A;  5HL4 A;  1PPJ E;  2YFI A;  4H0L D;  3CWB E;  3L71 E;  2QPZ A;  2DE7 D;  2HMK A;  2ZT9 D;  1SQQ E;  2XR8 A;  3H1K E;  4PV1 D;  3GTE A;  3EN1 A;  2HMO A;  1NTZ E;  1VCK A;  5AEW A;  2A06 E;  3CX5 E;  2XSO A;  2YFJ A;  5KLV E;  1SQP E;  1FQT A;  2NWF A;  3TGU E;  1NYK A;  4HJL A;  1G8J B;  4OGQ D;  3GL0 A;  1KYO E;  3C0D A;  4HKV A;  1O7H A;  2E4Q A;  2DE5 D;  2NVF A;  2YFL A;  2YIU C;  2BMR A;  1Q90 C;  3H1L E;  2FYN C;  4P1B H;  3GOB A;  1WQL A;  4NB9 D;  1SJG A;  2BMQ A;  2NUM A;  4PD4 E;  1KB9 E;  2NUK A;  3D89 A;  4NBE D;  2D2C D;  2XRX A;  2NVG A;  3VMI D;  1ULI A;  4AAY B;  2QJP C;  1ULJ A;  4QDD A;  4HM0 A;  4HM8 A;  4NBA D;  3L75 E;  2NVE A;  2JO6 A;  3EQQ A;  4U3F E;  2GBW A;  4QDC A;  1EZV E;  1SQX E;  4QDF B;  3GB4 A;  3L70 E;  4HM1 A;  2Q3W A;  1G8K B;  1JM1 A;  4H13 D;  2BMO A;  1NTM E;  3GKE A;  4QUQ A;  2GBX A; 
#chains in the Genus database with same CATH homology
 5BOK A;  1O7M A;  5KLI C;  1VF5 D;  5KKZ C;  1ZRT E;  1SQB E;  4NBF D;  3L74 E;  2IBZ E;  5CXM A;  2E4P A;  3VCP A;  2QJY C;  4HM2 A;  1L0L E;  3N0Q A;  2HMJ A;  2QJK C;  4H44 D;  3CXH E;  1PP9 E;  2BCC E;  1P84 E;  4HM5 A;  4NBB D;  2ZYL A;  1SQV E;  4NBH D;  4NBD D;  3VCA A;  3AZC A;  2YVJ B;  1RIE A;  1BCC E;  2HMN A;  2CKF A;  2E76 D;  3GZX A;  2FYU E;  3VMG D;  4P1C H;  3L73 E;  3GZY A;  4HM4 A;  3DQY A;  4HM6 A;  1O7N A;  1NTK E;  2XSH A;  3FOU A;  2HMM A;  4QDF A;  3L72 E;  1O7P A;  1NU1 E;  1RFS A;  4NBC D;  2DE6 D;  2E74 D;  4QUP A;  2B24 A;  4HM7 A;  3VMH D;  1UUW A;  4HM3 A;  3H1I E;  3GTS A;  2HML A;  1UUV A;  3H1H E;  1BE3 E;  1O7W A;  4NB8 D;  4QUR A;  1L0N E;  5AEU A;  4QCK A;  2JZA A;  3BCC E;  1VM9 A;  3GL2 A;  1O7G A;  3GCE A;  2B1X A;  1EG9 A;  4EMJ B;  4NBG D;  2E75 D;  1NDO A;  2I7F A;  3H1J E;  4AIV A;  5HL4 A;  1PPJ E;  2YFI A;  4H0L D;  3CWB E;  3L71 E;  2QPZ A;  2DE7 D;  2HMK A;  2ZT9 D;  1SQQ E;  2XR8 A;  3H1K E;  4PV1 D;  3GTE A;  3EN1 A;  2HMO A;  1NTZ E;  1VCK A;  5AEW A;  2A06 E;  3CX5 E;  2XSO A;  2YFJ A;  5KLV E;  1SQP E;  1FQT A;  2NWF A;  3TGU E;  1NYK A;  4HJL A;  1G8J B;  4OGQ D;  3GL0 A;  1KYO E;  3C0D A;  4HKV A;  1O7H A;  2E4Q A;  2DE5 D;  2NVF A;  2YFL A;  2YIU C;  2BMR A;  1Q90 C;  3H1L E;  2FYN C;  4P1B H;  3GOB A;  1WQL A;  4NB9 D;  1SJG A;  2BMQ A;  2NUM A;  4PD4 E;  1KB9 E;  2NUK A;  3D89 A;  4NBE D;  2D2C D;  2XRX A;  2NVG A;  3VMI D;  1ULI A;  4AAY B;  2QJP C;  1ULJ A;  4QDD A;  4HM0 A;  4HM8 A;  4NBA D;  3L75 E;  2NVE A;  2JO6 A;  3EQQ A;  4U3F E;  2GBW A;  4QDC A;  1EZV E;  1SQX E;  4QDF B;  3GB4 A;  3L70 E;  4HM1 A;  2Q3W A;  1G8K B;  1JM1 A;  4H13 D;  2BMO A;  1NTM E;  3GKE A;  4QUQ A;  2GBX A; 
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