4EMJ | Genus

Total Genus 21

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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	21
sequence length	106
structure length	106
Chain Sequence	TWTYILRQGDLPPGEMQRYEGGPEPVMVCNVDGEFFAVQDTCTHGDWALSDGYLDGDIVECTLHFGKFCVRTGKVKALPACKPIKVFPIKVEGDEVHVDLDNGELK

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Oxidoreductase
source organism	Pseudomonas putida
publication title	Suppression of Electron Transfer to Dioxygen by Charge Transfer and Electron Transfer Complexes in the FAD-dependent Reductase Component of Toluene Dioxygenase. pubmed doi rcsb
molecule keywords	TodA
total genus	21
structure length	106
sequence length	106
ec nomenclature
pdb deposition date	2012-04-12

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
B	PF00355	Rieske	Rieske [2Fe-2S] domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.102.10.10	Mainly Beta	3-layer Sandwich	Rieske Iron-sulfur Protein	Rieske [2Fe-2S] iron-sulphur domain	4emjB00

3N0QA 2YFIA 3BCCE 1RIEA 2NUMA 2E76D 4NB9D 3VCAA 2XRXA 3GB4A 2QPZA 3VMID 3H1LE 4HM5A 1SJGA 1SQXE 2NUKA 4P1BH 1VCKA 2A06E 2Q3WA 1RFSA 1EG9A 3L74E 2HMLA 1O7PA 1BE3E 4HKVA 4HM6A 2E4PA 3C0DA 3EN1A 4QUQA 4QDFB 3VMGD 2BMRA 2YVJB 1G8JB 4NBBD 4QUPA 2FYNC 1P84E 4NBDD 4HM2A 1VF5D 3CX5E 2E75D 1PP9E 3H1JE 2E74D 1NTZE 1L0NE 4HM3A 4NBED 3GKEA 2CKFA 1ULIA 1NDOA 1SQQE 1WQLA 2NVEA 3L70E 4PV1D 1SQVE 4NBFD 5AEUA 2GBXA 1VM9A 2GBWA 3GL2A 3GZYA 3GTSA 3CXHE 1EZVE 1O7NA 3GTEA 1KYOE 3CWBE 3EQQA 4HM1A 2NVGA 2YFLA 2JO6A 1SQBE 1Q90C 2HMJA 1KB9E 2IBZE 3GZXA 2QJKC 4HJLA 4AAYB 5KLVE 4NBCD 2D2CD 1O7MA 2JZAA 2I7FA 2BCCE 1ZRTE 4OGQD 2QJYC 2XR8A 1NTKE 2QJPC 2YIUC 4QURA 4U3FE 2ZYLA 1O7HA 2XSHA 2ZT9D 5KKZC 1O7GA 2E4QA 3D89A 3GL0A 4HM7A 4HM4A 2DE7D 4PD4E 2NVFA 1JM1A 2B24A 2BMQA 1L0LE 3H1HE 3VCPA 4QDDA 1G8KB 3GCEA 1NU1E 3DQYA 4NBHD 4AIVA 4HM8A 4QCKA 3GOBA 3TGUE 5HL4A 5BOKA 4H44D 2HMOA 1BCCE 2HMKA 2HMMA 3FOUA 3L75E 4QDCA 4P1CH 2NWFA 4NBAD 1O7WA 4HM0A 2DE6D 2B1XA 3H1IE 4NB8D 1ULJA 2YFJA 4QDFA 1FQTA 1UUVA 1NTME 1UUWA 5AEWA 3H1KE 1SQPE 5KLIC 3L73E 1NYKA 4H13D 5CXMA 3VMHD 3L71E 2XSOA 2BMOA 2FYUE 3L72E 4H0LD 2HMNA 2DE5D 1PPJE 4EMJB 3AZCA 4NBGD
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 3N0Q A;  2YFI A;  3BCC E;  1RIE A;  2NUM A;  2E76 D;  4NB9 D;  3VCA A;  2XRX A;  3GB4 A;  2QPZ A;  3VMI D;  3H1L E;  4HM5 A;  1SJG A;  1SQX E;  2NUK A;  4P1B H;  1VCK A;  2A06 E;  2Q3W A;  1RFS A;  1EG9 A;  3L74 E;  2HML A;  1O7P A;  1BE3 E;  4HKV A;  4HM6 A;  2E4P A;  3C0D A;  3EN1 A;  4QUQ A;  4QDF B;  3VMG D;  2BMR A;  2YVJ B;  1G8J B;  4NBB D;  4QUP A;  2FYN C;  1P84 E;  4NBD D;  4HM2 A;  1VF5 D;  3CX5 E;  2E75 D;  1PP9 E;  3H1J E;  2E74 D;  1NTZ E;  1L0N E;  4HM3 A;  4NBE D;  3GKE A;  2CKF A;  1ULI A;  1NDO A;  1SQQ E;  1WQL A;  2NVE A;  3L70 E;  4PV1 D;  1SQV E;  4NBF D;  5AEU A;  2GBX A;  1VM9 A;  2GBW A;  3GL2 A;  3GZY A;  3GTS A;  3CXH E;  1EZV E;  1O7N A;  3GTE A;  1KYO E;  3CWB E;  3EQQ A;  4HM1 A;  2NVG A;  2YFL A;  2JO6 A;  1SQB E;  1Q90 C;  2HMJ A;  1KB9 E;  2IBZ E;  3GZX A;  2QJK C;  4HJL A;  4AAY B;  5KLV E;  4NBC D;  2D2C D;  1O7M A;  2JZA A;  2I7F A;  2BCC E;  1ZRT E;  4OGQ D;  2QJY C;  2XR8 A;  1NTK E;  2QJP C;  2YIU C;  4QUR A;  4U3F E;  2ZYL A;  1O7H A;  2XSH A;  2ZT9 D;  5KKZ C;  1O7G A;  2E4Q A;  3D89 A;  3GL0 A;  4HM7 A;  4HM4 A;  2DE7 D;  4PD4 E;  2NVF A;  1JM1 A;  2B24 A;  2BMQ A;  1L0L E;  3H1H E;  3VCP A;  4QDD A;  1G8K B;  3GCE A;  1NU1 E;  3DQY A;  4NBH D;  4AIV A;  4HM8 A;  4QCK A;  3GOB A;  3TGU E;  5HL4 A;  5BOK A;  4H44 D;  2HMO A;  1BCC E;  2HMK A;  2HMM A;  3FOU A;  3L75 E;  4QDC A;  4P1C H;  2NWF A;  4NBA D;  1O7W A;  4HM0 A;  2DE6 D;  2B1X A;  3H1I E;  4NB8 D;  1ULJ A;  2YFJ A;  4QDF A;  1FQT A;  1UUV A;  1NTM E;  1UUW A;  5AEW A;  3H1K E;  1SQP E;  5KLI C;  3L73 E;  1NYK A;  4H13 D;  5CXM A;  3VMH D;  3L71 E;  2XSO A;  2BMO A;  2FYU E;  3L72 E;  4H0L D;  2HMN A;  2DE5 D;  1PPJ E;  4EMJ B;  3AZC A;  4NBG D; 
#chains in the Genus database with same CATH topology
 3N0Q A;  2YFI A;  3BCC E;  1RIE A;  2NUM A;  2E76 D;  4NB9 D;  3VCA A;  2XRX A;  3GB4 A;  2QPZ A;  3VMI D;  3H1L E;  4HM5 A;  1SJG A;  1SQX E;  2NUK A;  4P1B H;  1VCK A;  2A06 E;  2Q3W A;  1RFS A;  1EG9 A;  3L74 E;  2HML A;  1O7P A;  1BE3 E;  4HKV A;  4HM6 A;  2E4P A;  3C0D A;  3EN1 A;  4QUQ A;  4QDF B;  3VMG D;  2BMR A;  2YVJ B;  1G8J B;  4NBB D;  4QUP A;  2FYN C;  1P84 E;  4NBD D;  4HM2 A;  1VF5 D;  3CX5 E;  2E75 D;  1PP9 E;  3H1J E;  2E74 D;  1NTZ E;  1L0N E;  4HM3 A;  4NBE D;  3GKE A;  2CKF A;  1ULI A;  1NDO A;  1SQQ E;  1WQL A;  2NVE A;  3L70 E;  4PV1 D;  1SQV E;  4NBF D;  5AEU A;  2GBX A;  1VM9 A;  2GBW A;  3GL2 A;  3GZY A;  3GTS A;  3CXH E;  1EZV E;  1O7N A;  3GTE A;  1KYO E;  3CWB E;  3EQQ A;  4HM1 A;  2NVG A;  2YFL A;  2JO6 A;  1SQB E;  1Q90 C;  2HMJ A;  1KB9 E;  2IBZ E;  3GZX A;  2QJK C;  4HJL A;  4AAY B;  5KLV E;  4NBC D;  2D2C D;  1O7M A;  2JZA A;  2I7F A;  2BCC E;  1ZRT E;  4OGQ D;  2QJY C;  2XR8 A;  1NTK E;  2QJP C;  2YIU C;  4QUR A;  4U3F E;  2ZYL A;  1O7H A;  2XSH A;  2ZT9 D;  5KKZ C;  1O7G A;  2E4Q A;  3D89 A;  3GL0 A;  4HM7 A;  4HM4 A;  2DE7 D;  4PD4 E;  2NVF A;  1JM1 A;  2B24 A;  2BMQ A;  1L0L E;  3H1H E;  3VCP A;  4QDD A;  1G8K B;  3GCE A;  1NU1 E;  3DQY A;  4NBH D;  4AIV A;  4HM8 A;  4QCK A;  3GOB A;  3TGU E;  5HL4 A;  5BOK A;  4H44 D;  2HMO A;  1BCC E;  2HMK A;  2HMM A;  3FOU A;  3L75 E;  4QDC A;  4P1C H;  2NWF A;  4NBA D;  1O7W A;  4HM0 A;  2DE6 D;  2B1X A;  3H1I E;  4NB8 D;  1ULJ A;  2YFJ A;  4QDF A;  1FQT A;  1UUV A;  1NTM E;  1UUW A;  5AEW A;  3H1K E;  1SQP E;  5KLI C;  3L73 E;  1NYK A;  4H13 D;  5CXM A;  3VMH D;  3L71 E;  2XSO A;  2BMO A;  2FYU E;  3L72 E;  4H0L D;  2HMN A;  2DE5 D;  1PPJ E;  4EMJ B;  3AZC A;  4NBG D; 
#chains in the Genus database with same CATH homology
 3N0Q A;  2YFI A;  3BCC E;  1RIE A;  2NUM A;  2E76 D;  4NB9 D;  3VCA A;  2XRX A;  3GB4 A;  2QPZ A;  3VMI D;  3H1L E;  4HM5 A;  1SJG A;  1SQX E;  2NUK A;  4P1B H;  1VCK A;  2A06 E;  2Q3W A;  1RFS A;  1EG9 A;  3L74 E;  2HML A;  1O7P A;  1BE3 E;  4HKV A;  4HM6 A;  2E4P A;  3C0D A;  3EN1 A;  4QUQ A;  4QDF B;  3VMG D;  2BMR A;  2YVJ B;  1G8J B;  4NBB D;  4QUP A;  2FYN C;  1P84 E;  4NBD D;  4HM2 A;  1VF5 D;  3CX5 E;  2E75 D;  1PP9 E;  3H1J E;  2E74 D;  1NTZ E;  1L0N E;  4HM3 A;  4NBE D;  3GKE A;  2CKF A;  1ULI A;  1NDO A;  1SQQ E;  1WQL A;  2NVE A;  3L70 E;  4PV1 D;  1SQV E;  4NBF D;  5AEU A;  2GBX A;  1VM9 A;  2GBW A;  3GL2 A;  3GZY A;  3GTS A;  3CXH E;  1EZV E;  1O7N A;  3GTE A;  1KYO E;  3CWB E;  3EQQ A;  4HM1 A;  2NVG A;  2YFL A;  2JO6 A;  1SQB E;  1Q90 C;  2HMJ A;  1KB9 E;  2IBZ E;  3GZX A;  2QJK C;  4HJL A;  4AAY B;  5KLV E;  4NBC D;  2D2C D;  1O7M A;  2JZA A;  2I7F A;  2BCC E;  1ZRT E;  4OGQ D;  2QJY C;  2XR8 A;  1NTK E;  2QJP C;  2YIU C;  4QUR A;  4U3F E;  2ZYL A;  1O7H A;  2XSH A;  2ZT9 D;  5KKZ C;  1O7G A;  2E4Q A;  3D89 A;  3GL0 A;  4HM7 A;  4HM4 A;  2DE7 D;  4PD4 E;  2NVF A;  1JM1 A;  2B24 A;  2BMQ A;  1L0L E;  3H1H E;  3VCP A;  4QDD A;  1G8K B;  3GCE A;  1NU1 E;  3DQY A;  4NBH D;  4AIV A;  4HM8 A;  4QCK A;  3GOB A;  3TGU E;  5HL4 A;  5BOK A;  4H44 D;  2HMO A;  1BCC E;  2HMK A;  2HMM A;  3FOU A;  3L75 E;  4QDC A;  4P1C H;  2NWF A;  4NBA D;  1O7W A;  4HM0 A;  2DE6 D;  2B1X A;  3H1I E;  4NB8 D;  1ULJ A;  2YFJ A;  4QDF A;  1FQT A;  1UUV A;  1NTM E;  1UUW A;  5AEW A;  3H1K E;  1SQP E;  5KLI C;  3L73 E;  1NYK A;  4H13 D;  5CXM A;  3VMH D;  3L71 E;  2XSO A;  2BMO A;  2FYU E;  3L72 E;  4H0L D;  2HMN A;  2DE5 D;  1PPJ E;  4EMJ B;  3AZC A;  4NBG D;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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4EMJB

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations