4NB9 | Genus

Total Genus 19

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	19
sequence length	104
structure length	104
Chain Sequence	IWLKVCAASDMQPGTIRRVNRVGAAPLAVYRVGDQFYATEDTCTHGIASLSEGTLDGDVIECPFHGGAFNVCTGMPASSPCTVPLGVFEVEVKEGEVYVAGEKK

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

loadScript /static/js/j2s/core/package.js

loadScript /static/js/j2s/core/corejmol.z.js

loadScript /static/js/j2s/core/corescript.z.js

JSmol exec jmolApplet0 start applet null

Jmol JavaScript applet jmolApplet0__435925150715418__ initializing

Jmol getValue debug null

Jmol getValue logLevel null

Jmol getValue allowjavascript null

AppletRegistry.checkIn(jmolApplet0__435925150715418__)

vwrOptions:

{ "name":"jmolApplet0","applet":true,"documentBase":"https://genus.fuw.edu.pl/view/4NB9/D/","platform":"J.awtjs2d.Platform","fullName":"jmolApplet0__435925150715418__","codePath":"https:/static/js/j2s/","display":"jmolApplet0_canvas2d","signedApplet":"true","appletReadyCallback":"Jmol._readyCallback","statusListener":"[J.appletjs.Jmol object]","syncId":"435925150715418","bgcolor":"white" }

setting document base to "https://genus.fuw.edu.pl/view/4NB9/D/"

Jmol Version: 14.29.13 2018-04-17 17:17

java.vendor: Java2Script (HTML5)

java.version: 2018-01-28 23:38:52 (JSmol/j2s)

os.name: Mozilla/5.0 AppleWebKit/537.36 (KHTML, like Gecko; compatible; ClaudeBot/1.0; +claudebot@anthropic.com)

Access: ALL

memory: 0.0/0.0

processors available: 1

useCommandThread: false

appletId:jmolApplet0 (signed)

Jmol getValue emulate null

defaults = "Jmol"

Jmol getValue boxbgcolor null

Jmol getValue bgcolor white

backgroundColor = "white"

Jmol getValue ANIMFRAMECallback null

Jmol getValue APPLETREADYCallback Jmol._readyCallback

APPLETREADYCallback = "Jmol._readyCallback"

callback set for APPLETREADYCallback Jmol._readyCallback APPLETREADY

Jmol getValue ATOMMOVEDCallback null

Jmol getValue AUDIOCallback null

Jmol getValue CLICKCallback null

Jmol getValue DRAGDROPCallback null

Jmol getValue ECHOCallback null

Jmol getValue ERRORCallback null

Jmol getValue EVALCallback null

Jmol getValue HOVERCallback null

Jmol getValue IMAGECallback null

Jmol getValue LOADSTRUCTCallback null

Jmol getValue MEASURECallback null

Jmol getValue MESSAGECallback null

Jmol getValue MINIMIZATIONCallback null

Jmol getValue SERVICECallback null

Jmol getValue PICKCallback null

Jmol getValue RESIZECallback null

Jmol getValue SCRIPTCallback null

Jmol getValue SYNCCallback null

Jmol getValue STRUCTUREMODIFIEDCallback null

Jmol getValue doTranslate null

language=en_US

Jmol getValue popupMenu null

Jmol getValue script null

Jmol getValue loadInline null

Jmol getValue load null

Jmol applet jmolApplet0__435925150715418__ ready

script 1 started

platformSpeed = 8

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Oxidoreductase
source organism	Janthinobacterium
publication title	Structural Basis of the Divergent Oxygenation Reactions Catalyzed by the Rieske Non-heme Iron Oxygenase, Carbazole 1,9a-Dioxygenase pubmed doi rcsb
molecule keywords	Terminal oxygenase component of carbazole
total genus	19
structure length	104
sequence length	104
chains with identical sequence	E, F
ec nomenclature	ec 1.14.12.22: Carbazole 1,9a-dioxygenase.
pdb deposition date	2013-10-23

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
D	PF00355	Rieske	Rieske [2Fe-2S] domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.102.10.10	Mainly Beta	3-layer Sandwich	Rieske Iron-sulfur Protein	Rieske [2Fe-2S] iron-sulphur domain	4nb9D00

2B24A 2QJYC 3CWBE 2NUKA 4HM8A 1UUVA 4H13D 4P1BH 1NYKA 3L75E 3L72E 1ULJA 3GZXA 4NB9D 5KLIC 2IBZE 1NDOA 3L74E 3GL0A 3VCAA 2E4PA 4NBCD 4NBDD 1SQPE 4HM6A 5HL4A 1PP9E 2DE5D 1SQBE 2HMNA 3CXHE 3VMID 2JZAA 2NWFA 3VMGD 3TGUE 1NTME 1ULIA 4QDDA 4EMJB 3GTEA 3H1HE 3H1JE 3GOBA 3N0QA 4NBED 1VF5D 4H0LD 2A06E 3H1IE 4HM1A 1BE3E 3BCCE 2YFIA 1L0NE 2CKFA 2YFLA 2BMOA 2NVEA 3L71E 4QCKA 1JM1A 1L0LE 4H44D 1WQLA 3VCPA 3VMHD 2GBWA 3D89A 4NBHD 2QJPC 4U3FE 1RIEA 3EQQA 2FYUE 1O7HA 2NVGA 1G8KB 2XSHA 4HJLA 4OGQD 3GCEA 1FQTA 2FYNC 4NB8D 1VCKA 4PV1D 2E74D 2NUMA 4AAYB 2HMOA 3GTSA 1P84E 1NU1E 2B1XA 4QURA 4PD4E 2BMQA 1EZVE 4NBFD 1O7GA 2ZT9D 3AZCA 1SQXE 4QDFB 4NBGD 3GL2A 3H1KE 1Q90C 1EG9A 2GBXA 2D2CD 1G8JB 2XRXA 3L73E 5BOKA 1O7NA 3L70E 1PPJE 1SQQE 2QJKC 4HKVA 2YIUC 1BCCE 2HMLA 4AIVA 2YFJA 3CX5E 3H1LE 3EN1A 2BMRA 4HM7A 4HM0A 2E76D 1SQVE 4QUPA 4HM3A 4HM4A 1KYOE 2DE6D 1NTKE 4HM5A 5AEWA 1O7PA 3DQYA 1UUWA 2XSOA 1O7MA 2I7FA 4QDCA 1O7WA 2QPZA 3GKEA 2DE7D 2Q3WA 4QUQA 1ZRTE 1SJGA 2HMMA 1VM9A 2JO6A 3FOUA 4NBBD 3C0DA 4P1CH 2NVFA 1NTZE 2E4QA 5KKZC 4QDFA 4HM2A 2BCCE 2ZYLA 2E75D 1RFSA 4NBAD 3GB4A 2XR8A 5AEUA 2YVJB 5CXMA 3GZYA 2HMJA 1KB9E 5KLVE 2HMKA
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 2B24 A;  2QJY C;  3CWB E;  2NUK A;  4HM8 A;  1UUV A;  4H13 D;  4P1B H;  1NYK A;  3L75 E;  3L72 E;  1ULJ A;  3GZX A;  4NB9 D;  5KLI C;  2IBZ E;  1NDO A;  3L74 E;  3GL0 A;  3VCA A;  2E4P A;  4NBC D;  4NBD D;  1SQP E;  4HM6 A;  5HL4 A;  1PP9 E;  2DE5 D;  1SQB E;  2HMN A;  3CXH E;  3VMI D;  2JZA A;  2NWF A;  3VMG D;  3TGU E;  1NTM E;  1ULI A;  4QDD A;  4EMJ B;  3GTE A;  3H1H E;  3H1J E;  3GOB A;  3N0Q A;  4NBE D;  1VF5 D;  4H0L D;  2A06 E;  3H1I E;  4HM1 A;  1BE3 E;  3BCC E;  2YFI A;  1L0N E;  2CKF A;  2YFL A;  2BMO A;  2NVE A;  3L71 E;  4QCK A;  1JM1 A;  1L0L E;  4H44 D;  1WQL A;  3VCP A;  3VMH D;  2GBW A;  3D89 A;  4NBH D;  2QJP C;  4U3F E;  1RIE A;  3EQQ A;  2FYU E;  1O7H A;  2NVG A;  1G8K B;  2XSH A;  4HJL A;  4OGQ D;  3GCE A;  1FQT A;  2FYN C;  4NB8 D;  1VCK A;  4PV1 D;  2E74 D;  2NUM A;  4AAY B;  2HMO A;  3GTS A;  1P84 E;  1NU1 E;  2B1X A;  4QUR A;  4PD4 E;  2BMQ A;  1EZV E;  4NBF D;  1O7G A;  2ZT9 D;  3AZC A;  1SQX E;  4QDF B;  4NBG D;  3GL2 A;  3H1K E;  1Q90 C;  1EG9 A;  2GBX A;  2D2C D;  1G8J B;  2XRX A;  3L73 E;  5BOK A;  1O7N A;  3L70 E;  1PPJ E;  1SQQ E;  2QJK C;  4HKV A;  2YIU C;  1BCC E;  2HML A;  4AIV A;  2YFJ A;  3CX5 E;  3H1L E;  3EN1 A;  2BMR A;  4HM7 A;  4HM0 A;  2E76 D;  1SQV E;  4QUP A;  4HM3 A;  4HM4 A;  1KYO E;  2DE6 D;  1NTK E;  4HM5 A;  5AEW A;  1O7P A;  3DQY A;  1UUW A;  2XSO A;  1O7M A;  2I7F A;  4QDC A;  1O7W A;  2QPZ A;  3GKE A;  2DE7 D;  2Q3W A;  4QUQ A;  1ZRT E;  1SJG A;  2HMM A;  1VM9 A;  2JO6 A;  3FOU A;  4NBB D;  3C0D A;  4P1C H;  2NVF A;  1NTZ E;  2E4Q A;  5KKZ C;  4QDF A;  4HM2 A;  2BCC E;  2ZYL A;  2E75 D;  1RFS A;  4NBA D;  3GB4 A;  2XR8 A;  5AEU A;  2YVJ B;  5CXM A;  3GZY A;  2HMJ A;  1KB9 E;  5KLV E;  2HMK A; 
#chains in the Genus database with same CATH topology
 2B24 A;  2QJY C;  3CWB E;  2NUK A;  4HM8 A;  1UUV A;  4H13 D;  4P1B H;  1NYK A;  3L75 E;  3L72 E;  1ULJ A;  3GZX A;  4NB9 D;  5KLI C;  2IBZ E;  1NDO A;  3L74 E;  3GL0 A;  3VCA A;  2E4P A;  4NBC D;  4NBD D;  1SQP E;  4HM6 A;  5HL4 A;  1PP9 E;  2DE5 D;  1SQB E;  2HMN A;  3CXH E;  3VMI D;  2JZA A;  2NWF A;  3VMG D;  3TGU E;  1NTM E;  1ULI A;  4QDD A;  4EMJ B;  3GTE A;  3H1H E;  3H1J E;  3GOB A;  3N0Q A;  4NBE D;  1VF5 D;  4H0L D;  2A06 E;  3H1I E;  4HM1 A;  1BE3 E;  3BCC E;  2YFI A;  1L0N E;  2CKF A;  2YFL A;  2BMO A;  2NVE A;  3L71 E;  4QCK A;  1JM1 A;  1L0L E;  4H44 D;  1WQL A;  3VCP A;  3VMH D;  2GBW A;  3D89 A;  4NBH D;  2QJP C;  4U3F E;  1RIE A;  3EQQ A;  2FYU E;  1O7H A;  2NVG A;  1G8K B;  2XSH A;  4HJL A;  4OGQ D;  3GCE A;  1FQT A;  2FYN C;  4NB8 D;  1VCK A;  4PV1 D;  2E74 D;  2NUM A;  4AAY B;  2HMO A;  3GTS A;  1P84 E;  1NU1 E;  2B1X A;  4QUR A;  4PD4 E;  2BMQ A;  1EZV E;  4NBF D;  1O7G A;  2ZT9 D;  3AZC A;  1SQX E;  4QDF B;  4NBG D;  3GL2 A;  3H1K E;  1Q90 C;  1EG9 A;  2GBX A;  2D2C D;  1G8J B;  2XRX A;  3L73 E;  5BOK A;  1O7N A;  3L70 E;  1PPJ E;  1SQQ E;  2QJK C;  4HKV A;  2YIU C;  1BCC E;  2HML A;  4AIV A;  2YFJ A;  3CX5 E;  3H1L E;  3EN1 A;  2BMR A;  4HM7 A;  4HM0 A;  2E76 D;  1SQV E;  4QUP A;  4HM3 A;  4HM4 A;  1KYO E;  2DE6 D;  1NTK E;  4HM5 A;  5AEW A;  1O7P A;  3DQY A;  1UUW A;  2XSO A;  1O7M A;  2I7F A;  4QDC A;  1O7W A;  2QPZ A;  3GKE A;  2DE7 D;  2Q3W A;  4QUQ A;  1ZRT E;  1SJG A;  2HMM A;  1VM9 A;  2JO6 A;  3FOU A;  4NBB D;  3C0D A;  4P1C H;  2NVF A;  1NTZ E;  2E4Q A;  5KKZ C;  4QDF A;  4HM2 A;  2BCC E;  2ZYL A;  2E75 D;  1RFS A;  4NBA D;  3GB4 A;  2XR8 A;  5AEU A;  2YVJ B;  5CXM A;  3GZY A;  2HMJ A;  1KB9 E;  5KLV E;  2HMK A; 
#chains in the Genus database with same CATH homology
 2B24 A;  2QJY C;  3CWB E;  2NUK A;  4HM8 A;  1UUV A;  4H13 D;  4P1B H;  1NYK A;  3L75 E;  3L72 E;  1ULJ A;  3GZX A;  4NB9 D;  5KLI C;  2IBZ E;  1NDO A;  3L74 E;  3GL0 A;  3VCA A;  2E4P A;  4NBC D;  4NBD D;  1SQP E;  4HM6 A;  5HL4 A;  1PP9 E;  2DE5 D;  1SQB E;  2HMN A;  3CXH E;  3VMI D;  2JZA A;  2NWF A;  3VMG D;  3TGU E;  1NTM E;  1ULI A;  4QDD A;  4EMJ B;  3GTE A;  3H1H E;  3H1J E;  3GOB A;  3N0Q A;  4NBE D;  1VF5 D;  4H0L D;  2A06 E;  3H1I E;  4HM1 A;  1BE3 E;  3BCC E;  2YFI A;  1L0N E;  2CKF A;  2YFL A;  2BMO A;  2NVE A;  3L71 E;  4QCK A;  1JM1 A;  1L0L E;  4H44 D;  1WQL A;  3VCP A;  3VMH D;  2GBW A;  3D89 A;  4NBH D;  2QJP C;  4U3F E;  1RIE A;  3EQQ A;  2FYU E;  1O7H A;  2NVG A;  1G8K B;  2XSH A;  4HJL A;  4OGQ D;  3GCE A;  1FQT A;  2FYN C;  4NB8 D;  1VCK A;  4PV1 D;  2E74 D;  2NUM A;  4AAY B;  2HMO A;  3GTS A;  1P84 E;  1NU1 E;  2B1X A;  4QUR A;  4PD4 E;  2BMQ A;  1EZV E;  4NBF D;  1O7G A;  2ZT9 D;  3AZC A;  1SQX E;  4QDF B;  4NBG D;  3GL2 A;  3H1K E;  1Q90 C;  1EG9 A;  2GBX A;  2D2C D;  1G8J B;  2XRX A;  3L73 E;  5BOK A;  1O7N A;  3L70 E;  1PPJ E;  1SQQ E;  2QJK C;  4HKV A;  2YIU C;  1BCC E;  2HML A;  4AIV A;  2YFJ A;  3CX5 E;  3H1L E;  3EN1 A;  2BMR A;  4HM7 A;  4HM0 A;  2E76 D;  1SQV E;  4QUP A;  4HM3 A;  4HM4 A;  1KYO E;  2DE6 D;  1NTK E;  4HM5 A;  5AEW A;  1O7P A;  3DQY A;  1UUW A;  2XSO A;  1O7M A;  2I7F A;  4QDC A;  1O7W A;  2QPZ A;  3GKE A;  2DE7 D;  2Q3W A;  4QUQ A;  1ZRT E;  1SJG A;  2HMM A;  1VM9 A;  2JO6 A;  3FOU A;  4NBB D;  3C0D A;  4P1C H;  2NVF A;  1NTZ E;  2E4Q A;  5KKZ C;  4QDF A;  4HM2 A;  2BCC E;  2ZYL A;  2E75 D;  1RFS A;  4NBA D;  3GB4 A;  2XR8 A;  5AEU A;  2YVJ B;  5CXM A;  3GZY A;  2HMJ A;  1KB9 E;  5KLV E;  2HMK A;

...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)

...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

4NB9D

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations