4NBAD

Carbazole-bound oxygenase with ile262 replaced by val and ferredoxin complex of carbazole 1,9a-dioxygenase
Total Genus 19

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
19
sequence length
104
structure length
104
Chain Sequence
IWLKVCAASDMQPGTIRRVNRVGAAPLAVYRVGDQFYATEDTCTHGIASLSEGTLDGDVIECPFHGGAFNVCTGMPASSPCTVPLGVFEVEVKEGEVYVAGEKK

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
3H1 (11-13)S1 (5-10)S9 (90-96)S3 (30-35)TII1 (15-18)EMPTYS2 (18-22)S10 (99-106)S4 (38-43)TII2 (24-27)TIV1 (34-37)TVIa1 (81-84)3H2 (53-55)TIV2 (58-61)S5 (57-59)S7 (71-73)TIV4 (66-69)TI2 (74-77)TIV3 (65-68)TIV5 (73-76)TIV6 (95-98)TI1 (46-49)S6 (62-64)Updating...
connected with : NaN
molecule tags Oxidoreductase
source organism Janthinobacterium
publication title Structural Basis of the Divergent Oxygenation Reactions Catalyzed by the Rieske Non-heme Iron Oxygenase, Carbazole 1,9a-Dioxygenase
pubmed doi rcsb
molecule keywords Terminal oxygenase component of carbazole
total genus 19
structure length 104
sequence length 104
chains with identical sequence E, F
ec nomenclature ec 1.14.12.22: Carbazole 1,9a-dioxygenase.
pdb deposition date 2013-10-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
D PF00355 Rieske Rieske [2Fe-2S] domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 4nbaD00
1SQXE 1NU1E 4QDFA 4HM3A 3VMGD 2GBWA 4OGQD 1G8JB 2HMKA 3EQQA 4QDFB 4H0LD 2DE7D 3EN1A 1O7WA 3C0DA 3GTEA 2NVGA 4HM4A 2E4QA 5AEUA 1O7PA 3CX5E 3GCEA 1KYOE 3L70E 1P84E 2BMOA 1VCKA 3H1LE 2XSHA 4HM5A 4NBHD 3L71E 4QUPA 3TGUE 4QUQA 2YVJB 2BMRA 1NTME 1L0NE 2ZYLA 3GL0A 2FYUE 2YFJA 2E76D 2QPZA 3H1KE 3VMHD 1O7GA 4NB8D 4QDCA 2JZAA 2YFLA 2GBXA 3D89A 1O7MA 2DE6D 2E75D 2E4PA 1EG9A 4NBED 4HKVA 1SQPE 3BCCE 4PD4E 1NYKA 2JO6A 1Q90C 2QJYC 4HM6A 2BMQA 1ULIA 3VCPA 1NDOA 1ZRTE 4P1BH 4NBBD 5KLVE 4H13D 2HMJA 2NUMA 4NB9D 2B24A 4PV1D 2NVFA 4QCKA 2NUKA 5BOKA 4QDDA 4HM7A 4AAYB 3GOBA 3GL2A 2HMNA 3VCAA 3L72E 1O7NA 2NVEA 2Q3WA 5HL4A 4NBAD 1EZVE 1RFSA 1VM9A 5CXMA 2QJKC 3CWBE 3GKEA 1PP9E 4HM0A 2BCCE 4HM2A 4EMJB 1FQTA 2HMLA 3CXHE 1SJGA 2A06E 4AIVA 1UUVA 1BCCE 2HMOA 1NTKE 3GB4A 2B1XA 3AZCA 4HM8A 2XR8A 1NTZE 3VMID 2I7FA 1UUWA 3H1IE 2DE5D 1SQVE 4HJLA 5KKZC 2YIUC 3N0QA 3GZYA 5KLIC 2QJPC 3H1JE 3DQYA 2XRXA 2E74D 3GTSA 2YFIA 3FOUA 4NBCD 4NBGD 2XSOA 1O7HA 1SQBE 1JM1A 1VF5D 1ULJA 3GZXA 1WQLA 4NBFD 4NBDD 3L73E 2CKFA 4H44D 4U3FE 2IBZE 2D2CD 1BE3E 2FYNC 1L0LE 2ZT9D 1SQQE 3L75E 1KB9E 3L74E 4HM1A 2HMMA 1G8KB 4QURA 1RIEA 5AEWA 4P1CH 2NWFA 3H1HE 1PPJE
chains in the Genus database with same CATH superfamily
1SQXE 1NU1E 4QDFA 4HM3A 3VMGD 2GBWA 4OGQD 1G8JB 2HMKA 3EQQA 4QDFB 4H0LD 2DE7D 3EN1A 1O7WA 3C0DA 3GTEA 2NVGA 4HM4A 2E4QA 5AEUA 1O7PA 3CX5E 3GCEA 1KYOE 3L70E 1P84E 2BMOA 1VCKA 3H1LE 2XSHA 4HM5A 4NBHD 3L71E 4QUPA 3TGUE 4QUQA 2YVJB 2BMRA 1NTME 1L0NE 2ZYLA 3GL0A 2FYUE 2YFJA 2E76D 2QPZA 3H1KE 3VMHD 1O7GA 4NB8D 4QDCA 2JZAA 2YFLA 2GBXA 3D89A 1O7MA 2DE6D 2E75D 2E4PA 1EG9A 4NBED 4HKVA 1SQPE 3BCCE 4PD4E 1NYKA 2JO6A 1Q90C 2QJYC 4HM6A 2BMQA 1ULIA 3VCPA 1NDOA 1ZRTE 4P1BH 4NBBD 5KLVE 4H13D 2HMJA 2NUMA 4NB9D 2B24A 4PV1D 2NVFA 4QCKA 2NUKA 5BOKA 4QDDA 4HM7A 4AAYB 3GOBA 3GL2A 2HMNA 3VCAA 3L72E 1O7NA 2NVEA 2Q3WA 5HL4A 4NBAD 1EZVE 1RFSA 1VM9A 5CXMA 2QJKC 3CWBE 3GKEA 1PP9E 4HM0A 2BCCE 4HM2A 4EMJB 1FQTA 2HMLA 3CXHE 1SJGA 2A06E 4AIVA 1UUVA 1BCCE 2HMOA 1NTKE 3GB4A 2B1XA 3AZCA 4HM8A 2XR8A 1NTZE 3VMID 2I7FA 1UUWA 3H1IE 2DE5D 1SQVE 4HJLA 5KKZC 2YIUC 3N0QA 3GZYA 5KLIC 2QJPC 3H1JE 3DQYA 2XRXA 2E74D 3GTSA 2YFIA 3FOUA 4NBCD 4NBGD 2XSOA 1O7HA 1SQBE 1JM1A 1VF5D 1ULJA 3GZXA 1WQLA 4NBFD 4NBDD 3L73E 2CKFA 4H44D 4U3FE 2IBZE 2D2CD 1BE3E 2FYNC 1L0LE 2ZT9D 1SQQE 3L75E 1KB9E 3L74E 4HM1A 2HMMA 1G8KB 4QURA 1RIEA 5AEWA 4P1CH 2NWFA 3H1HE 1PPJE
chains in the Genus database with same CATH topology
1SQXE 1NU1E 4QDFA 4HM3A 3VMGD 2GBWA 4OGQD 1G8JB 2HMKA 3EQQA 4QDFB 4H0LD 2DE7D 3EN1A 1O7WA 3C0DA 3GTEA 2NVGA 4HM4A 2E4QA 5AEUA 1O7PA 3CX5E 3GCEA 1KYOE 3L70E 1P84E 2BMOA 1VCKA 3H1LE 2XSHA 4HM5A 4NBHD 3L71E 4QUPA 3TGUE 4QUQA 2YVJB 2BMRA 1NTME 1L0NE 2ZYLA 3GL0A 2FYUE 2YFJA 2E76D 2QPZA 3H1KE 3VMHD 1O7GA 4NB8D 4QDCA 2JZAA 2YFLA 2GBXA 3D89A 1O7MA 2DE6D 2E75D 2E4PA 1EG9A 4NBED 4HKVA 1SQPE 3BCCE 4PD4E 1NYKA 2JO6A 1Q90C 2QJYC 4HM6A 2BMQA 1ULIA 3VCPA 1NDOA 1ZRTE 4P1BH 4NBBD 5KLVE 4H13D 2HMJA 2NUMA 4NB9D 2B24A 4PV1D 2NVFA 4QCKA 2NUKA 5BOKA 4QDDA 4HM7A 4AAYB 3GOBA 3GL2A 2HMNA 3VCAA 3L72E 1O7NA 2NVEA 2Q3WA 5HL4A 4NBAD 1EZVE 1RFSA 1VM9A 5CXMA 2QJKC 3CWBE 3GKEA 1PP9E 4HM0A 2BCCE 4HM2A 4EMJB 1FQTA 2HMLA 3CXHE 1SJGA 2A06E 4AIVA 1UUVA 1BCCE 2HMOA 1NTKE 3GB4A 2B1XA 3AZCA 4HM8A 2XR8A 1NTZE 3VMID 2I7FA 1UUWA 3H1IE 2DE5D 1SQVE 4HJLA 5KKZC 2YIUC 3N0QA 3GZYA 5KLIC 2QJPC 3H1JE 3DQYA 2XRXA 2E74D 3GTSA 2YFIA 3FOUA 4NBCD 4NBGD 2XSOA 1O7HA 1SQBE 1JM1A 1VF5D 1ULJA 3GZXA 1WQLA 4NBFD 4NBDD 3L73E 2CKFA 4H44D 4U3FE 2IBZE 2D2CD 1BE3E 2FYNC 1L0LE 2ZT9D 1SQQE 3L75E 1KB9E 3L74E 4HM1A 2HMMA 1G8KB 4QURA 1RIEA 5AEWA 4P1CH 2NWFA 3H1HE 1PPJE
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1SQX E;  1NU1 E;  4QDF A;  4HM3 A;  3VMG D;  2GBW A;  4OGQ D;  1G8J B;  2HMK A;  3EQQ A;  4QDF B;  4H0L D;  2DE7 D;  3EN1 A;  1O7W A;  3C0D A;  3GTE A;  2NVG A;  4HM4 A;  2E4Q A;  5AEU A;  1O7P A;  3CX5 E;  3GCE A;  1KYO E;  3L70 E;  1P84 E;  2BMO A;  1VCK A;  3H1L E;  2XSH A;  4HM5 A;  4NBH D;  3L71 E;  4QUP A;  3TGU E;  4QUQ A;  2YVJ B;  2BMR A;  1NTM E;  1L0N E;  2ZYL A;  3GL0 A;  2FYU E;  2YFJ A;  2E76 D;  2QPZ A;  3H1K E;  3VMH D;  1O7G A;  4NB8 D;  4QDC A;  2JZA A;  2YFL A;  2GBX A;  3D89 A;  1O7M A;  2DE6 D;  2E75 D;  2E4P A;  1EG9 A;  4NBE D;  4HKV A;  1SQP E;  3BCC E;  4PD4 E;  1NYK A;  2JO6 A;  1Q90 C;  2QJY C;  4HM6 A;  2BMQ A;  1ULI A;  3VCP A;  1NDO A;  1ZRT E;  4P1B H;  4NBB D;  5KLV E;  4H13 D;  2HMJ A;  2NUM A;  4NB9 D;  2B24 A;  4PV1 D;  2NVF A;  4QCK A;  2NUK A;  5BOK A;  4QDD A;  4HM7 A;  4AAY B;  3GOB A;  3GL2 A;  2HMN A;  3VCA A;  3L72 E;  1O7N A;  2NVE A;  2Q3W A;  5HL4 A;  4NBA D;  1EZV E;  1RFS A;  1VM9 A;  5CXM A;  2QJK C;  3CWB E;  3GKE A;  1PP9 E;  4HM0 A;  2BCC E;  4HM2 A;  4EMJ B;  1FQT A;  2HML A;  3CXH E;  1SJG A;  2A06 E;  4AIV A;  1UUV A;  1BCC E;  2HMO A;  1NTK E;  3GB4 A;  2B1X A;  3AZC A;  4HM8 A;  2XR8 A;  1NTZ E;  3VMI D;  2I7F A;  1UUW A;  3H1I E;  2DE5 D;  1SQV E;  4HJL A;  5KKZ C;  2YIU C;  3N0Q A;  3GZY A;  5KLI C;  2QJP C;  3H1J E;  3DQY A;  2XRX A;  2E74 D;  3GTS A;  2YFI A;  3FOU A;  4NBC D;  4NBG D;  2XSO A;  1O7H A;  1SQB E;  1JM1 A;  1VF5 D;  1ULJ A;  3GZX A;  1WQL A;  4NBF D;  4NBD D;  3L73 E;  2CKF A;  4H44 D;  4U3F E;  2IBZ E;  2D2C D;  1BE3 E;  2FYN C;  1L0L E;  2ZT9 D;  1SQQ E;  3L75 E;  1KB9 E;  3L74 E;  4HM1 A;  2HMM A;  1G8K B;  4QUR A;  1RIE A;  5AEW A;  4P1C H;  2NWF A;  3H1H E;  1PPJ E; 
#chains in the Genus database with same CATH topology
 1SQX E;  1NU1 E;  4QDF A;  4HM3 A;  3VMG D;  2GBW A;  4OGQ D;  1G8J B;  2HMK A;  3EQQ A;  4QDF B;  4H0L D;  2DE7 D;  3EN1 A;  1O7W A;  3C0D A;  3GTE A;  2NVG A;  4HM4 A;  2E4Q A;  5AEU A;  1O7P A;  3CX5 E;  3GCE A;  1KYO E;  3L70 E;  1P84 E;  2BMO A;  1VCK A;  3H1L E;  2XSH A;  4HM5 A;  4NBH D;  3L71 E;  4QUP A;  3TGU E;  4QUQ A;  2YVJ B;  2BMR A;  1NTM E;  1L0N E;  2ZYL A;  3GL0 A;  2FYU E;  2YFJ A;  2E76 D;  2QPZ A;  3H1K E;  3VMH D;  1O7G A;  4NB8 D;  4QDC A;  2JZA A;  2YFL A;  2GBX A;  3D89 A;  1O7M A;  2DE6 D;  2E75 D;  2E4P A;  1EG9 A;  4NBE D;  4HKV A;  1SQP E;  3BCC E;  4PD4 E;  1NYK A;  2JO6 A;  1Q90 C;  2QJY C;  4HM6 A;  2BMQ A;  1ULI A;  3VCP A;  1NDO A;  1ZRT E;  4P1B H;  4NBB D;  5KLV E;  4H13 D;  2HMJ A;  2NUM A;  4NB9 D;  2B24 A;  4PV1 D;  2NVF A;  4QCK A;  2NUK A;  5BOK A;  4QDD A;  4HM7 A;  4AAY B;  3GOB A;  3GL2 A;  2HMN A;  3VCA A;  3L72 E;  1O7N A;  2NVE A;  2Q3W A;  5HL4 A;  4NBA D;  1EZV E;  1RFS A;  1VM9 A;  5CXM A;  2QJK C;  3CWB E;  3GKE A;  1PP9 E;  4HM0 A;  2BCC E;  4HM2 A;  4EMJ B;  1FQT A;  2HML A;  3CXH E;  1SJG A;  2A06 E;  4AIV A;  1UUV A;  1BCC E;  2HMO A;  1NTK E;  3GB4 A;  2B1X A;  3AZC A;  4HM8 A;  2XR8 A;  1NTZ E;  3VMI D;  2I7F A;  1UUW A;  3H1I E;  2DE5 D;  1SQV E;  4HJL A;  5KKZ C;  2YIU C;  3N0Q A;  3GZY A;  5KLI C;  2QJP C;  3H1J E;  3DQY A;  2XRX A;  2E74 D;  3GTS A;  2YFI A;  3FOU A;  4NBC D;  4NBG D;  2XSO A;  1O7H A;  1SQB E;  1JM1 A;  1VF5 D;  1ULJ A;  3GZX A;  1WQL A;  4NBF D;  4NBD D;  3L73 E;  2CKF A;  4H44 D;  4U3F E;  2IBZ E;  2D2C D;  1BE3 E;  2FYN C;  1L0L E;  2ZT9 D;  1SQQ E;  3L75 E;  1KB9 E;  3L74 E;  4HM1 A;  2HMM A;  1G8K B;  4QUR A;  1RIE A;  5AEW A;  4P1C H;  2NWF A;  3H1H E;  1PPJ E; 
#chains in the Genus database with same CATH homology
 1SQX E;  1NU1 E;  4QDF A;  4HM3 A;  3VMG D;  2GBW A;  4OGQ D;  1G8J B;  2HMK A;  3EQQ A;  4QDF B;  4H0L D;  2DE7 D;  3EN1 A;  1O7W A;  3C0D A;  3GTE A;  2NVG A;  4HM4 A;  2E4Q A;  5AEU A;  1O7P A;  3CX5 E;  3GCE A;  1KYO E;  3L70 E;  1P84 E;  2BMO A;  1VCK A;  3H1L E;  2XSH A;  4HM5 A;  4NBH D;  3L71 E;  4QUP A;  3TGU E;  4QUQ A;  2YVJ B;  2BMR A;  1NTM E;  1L0N E;  2ZYL A;  3GL0 A;  2FYU E;  2YFJ A;  2E76 D;  2QPZ A;  3H1K E;  3VMH D;  1O7G A;  4NB8 D;  4QDC A;  2JZA A;  2YFL A;  2GBX A;  3D89 A;  1O7M A;  2DE6 D;  2E75 D;  2E4P A;  1EG9 A;  4NBE D;  4HKV A;  1SQP E;  3BCC E;  4PD4 E;  1NYK A;  2JO6 A;  1Q90 C;  2QJY C;  4HM6 A;  2BMQ A;  1ULI A;  3VCP A;  1NDO A;  1ZRT E;  4P1B H;  4NBB D;  5KLV E;  4H13 D;  2HMJ A;  2NUM A;  4NB9 D;  2B24 A;  4PV1 D;  2NVF A;  4QCK A;  2NUK A;  5BOK A;  4QDD A;  4HM7 A;  4AAY B;  3GOB A;  3GL2 A;  2HMN A;  3VCA A;  3L72 E;  1O7N A;  2NVE A;  2Q3W A;  5HL4 A;  4NBA D;  1EZV E;  1RFS A;  1VM9 A;  5CXM A;  2QJK C;  3CWB E;  3GKE A;  1PP9 E;  4HM0 A;  2BCC E;  4HM2 A;  4EMJ B;  1FQT A;  2HML A;  3CXH E;  1SJG A;  2A06 E;  4AIV A;  1UUV A;  1BCC E;  2HMO A;  1NTK E;  3GB4 A;  2B1X A;  3AZC A;  4HM8 A;  2XR8 A;  1NTZ E;  3VMI D;  2I7F A;  1UUW A;  3H1I E;  2DE5 D;  1SQV E;  4HJL A;  5KKZ C;  2YIU C;  3N0Q A;  3GZY A;  5KLI C;  2QJP C;  3H1J E;  3DQY A;  2XRX A;  2E74 D;  3GTS A;  2YFI A;  3FOU A;  4NBC D;  4NBG D;  2XSO A;  1O7H A;  1SQB E;  1JM1 A;  1VF5 D;  1ULJ A;  3GZX A;  1WQL A;  4NBF D;  4NBD D;  3L73 E;  2CKF A;  4H44 D;  4U3F E;  2IBZ E;  2D2C D;  1BE3 E;  2FYN C;  1L0L E;  2ZT9 D;  1SQQ E;  3L75 E;  1KB9 E;  3L74 E;  4HM1 A;  2HMM A;  1G8K B;  4QUR A;  1RIE A;  5AEW A;  4P1C H;  2NWF A;  3H1H E;  1PPJ E; 
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