4NBDD

Carbazole-bound oxygenase with phe275 replaced by trp and ferredoxin complex of carbazole 1,9a-dioxygenase (form2)
Total Genus 17
1020304050607080901000246810121416
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
17
sequence length
103
structure length
103
Chain Sequence
IWLKVCAASDMQPGTIRRVNRVGAAPLAVYRVGDQFYATEDTCTHGIASLSEGTLDGDVIECPFHGGAFNVCTGMPASSPCTVPLGVFEVEVKEGEVYVAGEK

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTIV6 (95-98)S1 (6-10)S9 (91-96)S3 (27-35)TI1 (10-13)TII1 (15-18)TI2 (11-14)S2 (18-24)TII2 (24-27)S4 (38-43)TIV1 (34-37)TVIa1 (81-84)3H1 (53-55)TII'1 (59-62)S5 (57-59)S7 (71-73)TI4 (66-69)TI5 (74-77)TIV3 (65-68)TIV4 (73-76)TIV5 (82-85)S8 (79-81)TI3 (46-49)S6 (62-64)S10 (99-105)Updating...
connected with : NaN
molecule tags Oxidoreductase
source organism Janthinobacterium
publication title Structural Basis of the Divergent Oxygenation Reactions Catalyzed by the Rieske Non-heme Iron Oxygenase, Carbazole 1,9a-Dioxygenase
pubmed doi rcsb
molecule keywords Terminal oxygenase component of carbazole
total genus 17
structure length 103
sequence length 103
chains with identical sequence E
ec nomenclature ec 1.14.12.22: Carbazole 1,9a-dioxygenase.
pdb deposition date 2013-10-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
D PF00355 Rieske Rieske [2Fe-2S] domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 4nbdD00
1NU1E 2DE5D 2DE6D 2E75D 4NBBD 1UUWA 1NTME 4NBED 1JM1A 2NWFA 2ZT9D 3L70E 4HM4A 4QDFA 1G8JB 4HJLA 2B1XA 1SQVE 4H44D 3N0QA 1L0NE 3L72E 4NB9D 4NB8D 3GTSA 1O7GA 3GZXA 2YFIA 4NBFD 3GOBA 2BMOA 4P1BH 5KLIC 2QPZA 1NDOA 2DE7D 1FQTA 2YIUC 3H1JE 5BOKA 3H1LE 2YFJA 1O7MA 2I7FA 1BE3E 2HMLA 3TGUE 3CWBE 2HMKA 2NVEA 5KLVE 5CXMA 1SQXE 5AEUA 1O7HA 4QDCA 1WQLA 1NTZE 2HMOA 4HM8A 3L73E 4NBHD 1PP9E 4U3FE 2HMNA 4H13D 4AAYB 3H1IE 1BCCE 3EQQA 3L74E 3CXHE 4NBDD 4PD4E 3VMID 2QJKC 4HM6A 1P84E 3H1KE 2XRXA 3FOUA 1NYKA 4QUQA 3CX5E 1SQQE 2CKFA 2NVGA 5AEWA 4H0LD 3DQYA 3H1HE 1VF5D 1O7PA 2GBXA 2QJPC 4HM3A 2JZAA 1ULIA 4HM1A 4OGQD 2HMJA 2ZYLA 3GKEA 3D89A 4HM2A 4NBGD 4QDDA 2YVJB 4NBCD 2Q3WA 3GL2A 2E74D 1UUVA 2FYNC 2E76D 4QCKA 1SQBE 2XSOA 1VM9A 2YFLA 5HL4A 1SQPE 1SJGA 1O7WA 4P1CH 4AIVA 3GZYA 2A06E 4QURA 4NBAD 4EMJB 2BCCE 3VMHD 2D2CD 4HM7A 3GCEA 1KYOE 3VMGD 2B24A 2XR8A 1ZRTE 3AZCA 1L0LE 4QDFB 1PPJE 1RIEA 4PV1D 3GL0A 4HKVA 2NVFA 2E4PA 3L75E 2E4QA 1EG9A 1G8KB 1ULJA 2XSHA 1NTKE 1RFSA 1VCKA 3VCPA 2JO6A 4HM5A 3VCAA 5KKZC 2FYUE 1O7NA 2NUMA 2QJYC 2IBZE 2GBWA 1EZVE 2BMQA 3EN1A 3BCCE 3GB4A 1KB9E 1Q90C 3C0DA 4QUPA 3L71E 2NUKA 3GTEA 2HMMA 4HM0A 2BMRA
chains in the Genus database with same CATH superfamily
1NU1E 2DE5D 2DE6D 2E75D 4NBBD 1UUWA 1NTME 4NBED 1JM1A 2NWFA 2ZT9D 3L70E 4HM4A 4QDFA 1G8JB 4HJLA 2B1XA 1SQVE 4H44D 3N0QA 1L0NE 3L72E 4NB9D 4NB8D 3GTSA 1O7GA 3GZXA 2YFIA 4NBFD 3GOBA 2BMOA 4P1BH 5KLIC 2QPZA 1NDOA 2DE7D 1FQTA 2YIUC 3H1JE 5BOKA 3H1LE 2YFJA 1O7MA 2I7FA 1BE3E 2HMLA 3TGUE 3CWBE 2HMKA 2NVEA 5KLVE 5CXMA 1SQXE 5AEUA 1O7HA 4QDCA 1WQLA 1NTZE 2HMOA 4HM8A 3L73E 4NBHD 1PP9E 4U3FE 2HMNA 4H13D 4AAYB 3H1IE 1BCCE 3EQQA 3L74E 3CXHE 4NBDD 4PD4E 3VMID 2QJKC 4HM6A 1P84E 3H1KE 2XRXA 3FOUA 1NYKA 4QUQA 3CX5E 1SQQE 2CKFA 2NVGA 5AEWA 4H0LD 3DQYA 3H1HE 1VF5D 1O7PA 2GBXA 2QJPC 4HM3A 2JZAA 1ULIA 4HM1A 4OGQD 2HMJA 2ZYLA 3GKEA 3D89A 4HM2A 4NBGD 4QDDA 2YVJB 4NBCD 2Q3WA 3GL2A 2E74D 1UUVA 2FYNC 2E76D 4QCKA 1SQBE 2XSOA 1VM9A 2YFLA 5HL4A 1SQPE 1SJGA 1O7WA 4P1CH 4AIVA 3GZYA 2A06E 4QURA 4NBAD 4EMJB 2BCCE 3VMHD 2D2CD 4HM7A 3GCEA 1KYOE 3VMGD 2B24A 2XR8A 1ZRTE 3AZCA 1L0LE 4QDFB 1PPJE 1RIEA 4PV1D 3GL0A 4HKVA 2NVFA 2E4PA 3L75E 2E4QA 1EG9A 1G8KB 1ULJA 2XSHA 1NTKE 1RFSA 1VCKA 3VCPA 2JO6A 4HM5A 3VCAA 5KKZC 2FYUE 1O7NA 2NUMA 2QJYC 2IBZE 2GBWA 1EZVE 2BMQA 3EN1A 3BCCE 3GB4A 1KB9E 1Q90C 3C0DA 4QUPA 3L71E 2NUKA 3GTEA 2HMMA 4HM0A 2BMRA
chains in the Genus database with same CATH topology
1NU1E 2DE5D 2DE6D 2E75D 4NBBD 1UUWA 1NTME 4NBED 1JM1A 2NWFA 2ZT9D 3L70E 4HM4A 4QDFA 1G8JB 4HJLA 2B1XA 1SQVE 4H44D 3N0QA 1L0NE 3L72E 4NB9D 4NB8D 3GTSA 1O7GA 3GZXA 2YFIA 4NBFD 3GOBA 2BMOA 4P1BH 5KLIC 2QPZA 1NDOA 2DE7D 1FQTA 2YIUC 3H1JE 5BOKA 3H1LE 2YFJA 1O7MA 2I7FA 1BE3E 2HMLA 3TGUE 3CWBE 2HMKA 2NVEA 5KLVE 5CXMA 1SQXE 5AEUA 1O7HA 4QDCA 1WQLA 1NTZE 2HMOA 4HM8A 3L73E 4NBHD 1PP9E 4U3FE 2HMNA 4H13D 4AAYB 3H1IE 1BCCE 3EQQA 3L74E 3CXHE 4NBDD 4PD4E 3VMID 2QJKC 4HM6A 1P84E 3H1KE 2XRXA 3FOUA 1NYKA 4QUQA 3CX5E 1SQQE 2CKFA 2NVGA 5AEWA 4H0LD 3DQYA 3H1HE 1VF5D 1O7PA 2GBXA 2QJPC 4HM3A 2JZAA 1ULIA 4HM1A 4OGQD 2HMJA 2ZYLA 3GKEA 3D89A 4HM2A 4NBGD 4QDDA 2YVJB 4NBCD 2Q3WA 3GL2A 2E74D 1UUVA 2FYNC 2E76D 4QCKA 1SQBE 2XSOA 1VM9A 2YFLA 5HL4A 1SQPE 1SJGA 1O7WA 4P1CH 4AIVA 3GZYA 2A06E 4QURA 4NBAD 4EMJB 2BCCE 3VMHD 2D2CD 4HM7A 3GCEA 1KYOE 3VMGD 2B24A 2XR8A 1ZRTE 3AZCA 1L0LE 4QDFB 1PPJE 1RIEA 4PV1D 3GL0A 4HKVA 2NVFA 2E4PA 3L75E 2E4QA 1EG9A 1G8KB 1ULJA 2XSHA 1NTKE 1RFSA 1VCKA 3VCPA 2JO6A 4HM5A 3VCAA 5KKZC 2FYUE 1O7NA 2NUMA 2QJYC 2IBZE 2GBWA 1EZVE 2BMQA 3EN1A 3BCCE 3GB4A 1KB9E 1Q90C 3C0DA 4QUPA 3L71E 2NUKA 3GTEA 2HMMA 4HM0A 2BMRA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1NU1 E;  2DE5 D;  2DE6 D;  2E75 D;  4NBB D;  1UUW A;  1NTM E;  4NBE D;  1JM1 A;  2NWF A;  2ZT9 D;  3L70 E;  4HM4 A;  4QDF A;  1G8J B;  4HJL A;  2B1X A;  1SQV E;  4H44 D;  3N0Q A;  1L0N E;  3L72 E;  4NB9 D;  4NB8 D;  3GTS A;  1O7G A;  3GZX A;  2YFI A;  4NBF D;  3GOB A;  2BMO A;  4P1B H;  5KLI C;  2QPZ A;  1NDO A;  2DE7 D;  1FQT A;  2YIU C;  3H1J E;  5BOK A;  3H1L E;  2YFJ A;  1O7M A;  2I7F A;  1BE3 E;  2HML A;  3TGU E;  3CWB E;  2HMK A;  2NVE A;  5KLV E;  5CXM A;  1SQX E;  5AEU A;  1O7H A;  4QDC A;  1WQL A;  1NTZ E;  2HMO A;  4HM8 A;  3L73 E;  4NBH D;  1PP9 E;  4U3F E;  2HMN A;  4H13 D;  4AAY B;  3H1I E;  1BCC E;  3EQQ A;  3L74 E;  3CXH E;  4NBD D;  4PD4 E;  3VMI D;  2QJK C;  4HM6 A;  1P84 E;  3H1K E;  2XRX A;  3FOU A;  1NYK A;  4QUQ A;  3CX5 E;  1SQQ E;  2CKF A;  2NVG A;  5AEW A;  4H0L D;  3DQY A;  3H1H E;  1VF5 D;  1O7P A;  2GBX A;  2QJP C;  4HM3 A;  2JZA A;  1ULI A;  4HM1 A;  4OGQ D;  2HMJ A;  2ZYL A;  3GKE A;  3D89 A;  4HM2 A;  4NBG D;  4QDD A;  2YVJ B;  4NBC D;  2Q3W A;  3GL2 A;  2E74 D;  1UUV A;  2FYN C;  2E76 D;  4QCK A;  1SQB E;  2XSO A;  1VM9 A;  2YFL A;  5HL4 A;  1SQP E;  1SJG A;  1O7W A;  4P1C H;  4AIV A;  3GZY A;  2A06 E;  4QUR A;  4NBA D;  4EMJ B;  2BCC E;  3VMH D;  2D2C D;  4HM7 A;  3GCE A;  1KYO E;  3VMG D;  2B24 A;  2XR8 A;  1ZRT E;  3AZC A;  1L0L E;  4QDF B;  1PPJ E;  1RIE A;  4PV1 D;  3GL0 A;  4HKV A;  2NVF A;  2E4P A;  3L75 E;  2E4Q A;  1EG9 A;  1G8K B;  1ULJ A;  2XSH A;  1NTK E;  1RFS A;  1VCK A;  3VCP A;  2JO6 A;  4HM5 A;  3VCA A;  5KKZ C;  2FYU E;  1O7N A;  2NUM A;  2QJY C;  2IBZ E;  2GBW A;  1EZV E;  2BMQ A;  3EN1 A;  3BCC E;  3GB4 A;  1KB9 E;  1Q90 C;  3C0D A;  4QUP A;  3L71 E;  2NUK A;  3GTE A;  2HMM A;  4HM0 A;  2BMR A; 
#chains in the Genus database with same CATH topology
 1NU1 E;  2DE5 D;  2DE6 D;  2E75 D;  4NBB D;  1UUW A;  1NTM E;  4NBE D;  1JM1 A;  2NWF A;  2ZT9 D;  3L70 E;  4HM4 A;  4QDF A;  1G8J B;  4HJL A;  2B1X A;  1SQV E;  4H44 D;  3N0Q A;  1L0N E;  3L72 E;  4NB9 D;  4NB8 D;  3GTS A;  1O7G A;  3GZX A;  2YFI A;  4NBF D;  3GOB A;  2BMO A;  4P1B H;  5KLI C;  2QPZ A;  1NDO A;  2DE7 D;  1FQT A;  2YIU C;  3H1J E;  5BOK A;  3H1L E;  2YFJ A;  1O7M A;  2I7F A;  1BE3 E;  2HML A;  3TGU E;  3CWB E;  2HMK A;  2NVE A;  5KLV E;  5CXM A;  1SQX E;  5AEU A;  1O7H A;  4QDC A;  1WQL A;  1NTZ E;  2HMO A;  4HM8 A;  3L73 E;  4NBH D;  1PP9 E;  4U3F E;  2HMN A;  4H13 D;  4AAY B;  3H1I E;  1BCC E;  3EQQ A;  3L74 E;  3CXH E;  4NBD D;  4PD4 E;  3VMI D;  2QJK C;  4HM6 A;  1P84 E;  3H1K E;  2XRX A;  3FOU A;  1NYK A;  4QUQ A;  3CX5 E;  1SQQ E;  2CKF A;  2NVG A;  5AEW A;  4H0L D;  3DQY A;  3H1H E;  1VF5 D;  1O7P A;  2GBX A;  2QJP C;  4HM3 A;  2JZA A;  1ULI A;  4HM1 A;  4OGQ D;  2HMJ A;  2ZYL A;  3GKE A;  3D89 A;  4HM2 A;  4NBG D;  4QDD A;  2YVJ B;  4NBC D;  2Q3W A;  3GL2 A;  2E74 D;  1UUV A;  2FYN C;  2E76 D;  4QCK A;  1SQB E;  2XSO A;  1VM9 A;  2YFL A;  5HL4 A;  1SQP E;  1SJG A;  1O7W A;  4P1C H;  4AIV A;  3GZY A;  2A06 E;  4QUR A;  4NBA D;  4EMJ B;  2BCC E;  3VMH D;  2D2C D;  4HM7 A;  3GCE A;  1KYO E;  3VMG D;  2B24 A;  2XR8 A;  1ZRT E;  3AZC A;  1L0L E;  4QDF B;  1PPJ E;  1RIE A;  4PV1 D;  3GL0 A;  4HKV A;  2NVF A;  2E4P A;  3L75 E;  2E4Q A;  1EG9 A;  1G8K B;  1ULJ A;  2XSH A;  1NTK E;  1RFS A;  1VCK A;  3VCP A;  2JO6 A;  4HM5 A;  3VCA A;  5KKZ C;  2FYU E;  1O7N A;  2NUM A;  2QJY C;  2IBZ E;  2GBW A;  1EZV E;  2BMQ A;  3EN1 A;  3BCC E;  3GB4 A;  1KB9 E;  1Q90 C;  3C0D A;  4QUP A;  3L71 E;  2NUK A;  3GTE A;  2HMM A;  4HM0 A;  2BMR A; 
#chains in the Genus database with same CATH homology
 1NU1 E;  2DE5 D;  2DE6 D;  2E75 D;  4NBB D;  1UUW A;  1NTM E;  4NBE D;  1JM1 A;  2NWF A;  2ZT9 D;  3L70 E;  4HM4 A;  4QDF A;  1G8J B;  4HJL A;  2B1X A;  1SQV E;  4H44 D;  3N0Q A;  1L0N E;  3L72 E;  4NB9 D;  4NB8 D;  3GTS A;  1O7G A;  3GZX A;  2YFI A;  4NBF D;  3GOB A;  2BMO A;  4P1B H;  5KLI C;  2QPZ A;  1NDO A;  2DE7 D;  1FQT A;  2YIU C;  3H1J E;  5BOK A;  3H1L E;  2YFJ A;  1O7M A;  2I7F A;  1BE3 E;  2HML A;  3TGU E;  3CWB E;  2HMK A;  2NVE A;  5KLV E;  5CXM A;  1SQX E;  5AEU A;  1O7H A;  4QDC A;  1WQL A;  1NTZ E;  2HMO A;  4HM8 A;  3L73 E;  4NBH D;  1PP9 E;  4U3F E;  2HMN A;  4H13 D;  4AAY B;  3H1I E;  1BCC E;  3EQQ A;  3L74 E;  3CXH E;  4NBD D;  4PD4 E;  3VMI D;  2QJK C;  4HM6 A;  1P84 E;  3H1K E;  2XRX A;  3FOU A;  1NYK A;  4QUQ A;  3CX5 E;  1SQQ E;  2CKF A;  2NVG A;  5AEW A;  4H0L D;  3DQY A;  3H1H E;  1VF5 D;  1O7P A;  2GBX A;  2QJP C;  4HM3 A;  2JZA A;  1ULI A;  4HM1 A;  4OGQ D;  2HMJ A;  2ZYL A;  3GKE A;  3D89 A;  4HM2 A;  4NBG D;  4QDD A;  2YVJ B;  4NBC D;  2Q3W A;  3GL2 A;  2E74 D;  1UUV A;  2FYN C;  2E76 D;  4QCK A;  1SQB E;  2XSO A;  1VM9 A;  2YFL A;  5HL4 A;  1SQP E;  1SJG A;  1O7W A;  4P1C H;  4AIV A;  3GZY A;  2A06 E;  4QUR A;  4NBA D;  4EMJ B;  2BCC E;  3VMH D;  2D2C D;  4HM7 A;  3GCE A;  1KYO E;  3VMG D;  2B24 A;  2XR8 A;  1ZRT E;  3AZC A;  1L0L E;  4QDF B;  1PPJ E;  1RIE A;  4PV1 D;  3GL0 A;  4HKV A;  2NVF A;  2E4P A;  3L75 E;  2E4Q A;  1EG9 A;  1G8K B;  1ULJ A;  2XSH A;  1NTK E;  1RFS A;  1VCK A;  3VCP A;  2JO6 A;  4HM5 A;  3VCA A;  5KKZ C;  2FYU E;  1O7N A;  2NUM A;  2QJY C;  2IBZ E;  2GBW A;  1EZV E;  2BMQ A;  3EN1 A;  3BCC E;  3GB4 A;  1KB9 E;  1Q90 C;  3C0D A;  4QUP A;  3L71 E;  2NUK A;  3GTE A;  2HMM A;  4HM0 A;  2BMR A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

Application loaded.