4NBED

Fluorene-bound oxygenase with phe275 replaced by trp and ferredoxin complex of carbazole 1,9a-dioxygenase (form2)
Total Genus 17
1020304050607080901000246810121416
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
17
sequence length
103
structure length
103
Chain Sequence
IWLKVCAASDMQPGTIRRVNRVGAAPLAVYRVGDQFYATEDTCTHGIASLSEGTLDGDVIECPFHGGAFNVCTGMPASSPCTVPLGVFEVEVKEGEVYVAGEK

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTIV7 (95-98)S1 (6-10)S9 (91-95)TI1 (10-13)TII1 (15-18)S3 (27-35)TI2 (11-14)S2 (18-24)TII2 (24-27)S4 (38-43)TIV1 (34-37)TVIa1 (81-84)3H1 (53-55)TIV3 (58-61)S5 (57-59)S7 (71-73)TI4 (66-69)TI5 (74-77)TIV4 (65-68)TIV5 (73-76)TIV6 (82-85)S8 (79-81)TI3 (46-49)S6 (62-64)S10 (99-105)Updating...
connected with : NaN
molecule tags Oxidoreductase
source organism Janthinobacterium
publication title Structural Basis of the Divergent Oxygenation Reactions Catalyzed by the Rieske Non-heme Iron Oxygenase, Carbazole 1,9a-Dioxygenase
pubmed doi rcsb
molecule keywords Terminal oxygenase component of carbazole
total genus 17
structure length 103
sequence length 103
chains with identical sequence E
ec nomenclature ec 1.14.12.22: Carbazole 1,9a-dioxygenase.
pdb deposition date 2013-10-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
D PF00355 Rieske Rieske [2Fe-2S] domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 4nbeD00
4QDFB 3GTEA 4NBFD 2BMOA 2NUKA 4NBGD 1SQBE 1NTME 2I7FA 1SQPE 2NUMA 1O7PA 3L71E 4EMJB 4H44D 2JO6A 4OGQD 3GTSA 1NTZE 4PV1D 2A06E 5AEWA 4HM8A 1P84E 2DE7D 2GBWA 2NWFA 4P1CH 5BOKA 2HMNA 3D89A 3L72E 3L73E 3N0QA 5KKZC 4QCKA 1SQVE 4QDFA 1NTKE 4AAYB 1UUWA 3EQQA 3AZCA 3GB4A 1Q90C 1UUVA 2IBZE 3GZXA 4QDDA 3TGUE 4H0LD 3VCAA 1PP9E 1KB9E 2B24A 4NBED 1O7MA 4NBHD 1SQXE 2HMJA 2YFIA 5CXMA 3BCCE 1KYOE 2D2CD 2XSOA 1EG9A 1NU1E 2DE5D 1NYKA 2B1XA 3H1IE 3GKEA 2FYUE 3FOUA 3VMID 3H1KE 2XSHA 1ULIA 2DE6D 2QJYC 3GZYA 3EN1A 3CX5E 4HJLA 2E76D 1O7WA 2BMRA 2E4QA 3L75E 1SQQE 1RFSA 3GL0A 2E4PA 3VMHD 4PD4E 5KLVE 4QURA 5HL4A 3L70E 1O7NA 2NVEA 3DQYA 1BCCE 4HM4A 4QUPA 4U3FE 2QJKC 2YFLA 1L0LE 4HM1A 1WQLA 2QJPC 4NBCD 3GCEA 1JM1A 4H13D 1ZRTE 4NBAD 4P1BH 4NB8D 4AIVA 1VCKA 1VM9A 3H1JE 2YIUC 3L74E 1BE3E 2HMMA 2YFJA 2XRXA 1EZVE 1FQTA 2HMKA 4HM3A 4HKVA 4HM5A 2NVFA 2FYNC 2CKFA 4QDCA 2QPZA 3GOBA 4HM2A 4HM0A 3VMGD 1G8KB 2E75D 3H1LE 4NB9D 2JZAA 3VCPA 2NVGA 3H1HE 5KLIC 2YVJB 4HM6A 2BMQA 4NBBD 2XR8A 4HM7A 1PPJE 1SJGA 1VF5D 1NDOA 1G8JB 2HMLA 2GBXA 4NBDD 2HMOA 2E74D 4QUQA 3C0DA 2BCCE 1RIEA 3GL2A 5AEUA 1ULJA 1L0NE 2Q3WA 2ZYLA 3CWBE 1O7GA 3CXHE 2ZT9D 1O7HA
chains in the Genus database with same CATH superfamily
4QDFB 3GTEA 4NBFD 2BMOA 2NUKA 4NBGD 1SQBE 1NTME 2I7FA 1SQPE 2NUMA 1O7PA 3L71E 4EMJB 4H44D 2JO6A 4OGQD 3GTSA 1NTZE 4PV1D 2A06E 5AEWA 4HM8A 1P84E 2DE7D 2GBWA 2NWFA 4P1CH 5BOKA 2HMNA 3D89A 3L72E 3L73E 3N0QA 5KKZC 4QCKA 1SQVE 4QDFA 1NTKE 4AAYB 1UUWA 3EQQA 3AZCA 3GB4A 1Q90C 1UUVA 2IBZE 3GZXA 4QDDA 3TGUE 4H0LD 3VCAA 1PP9E 1KB9E 2B24A 4NBED 1O7MA 4NBHD 1SQXE 2HMJA 2YFIA 5CXMA 3BCCE 1KYOE 2D2CD 2XSOA 1EG9A 1NU1E 2DE5D 1NYKA 2B1XA 3H1IE 3GKEA 2FYUE 3FOUA 3VMID 3H1KE 2XSHA 1ULIA 2DE6D 2QJYC 3GZYA 3EN1A 3CX5E 4HJLA 2E76D 1O7WA 2BMRA 2E4QA 3L75E 1SQQE 1RFSA 3GL0A 2E4PA 3VMHD 4PD4E 5KLVE 4QURA 5HL4A 3L70E 1O7NA 2NVEA 3DQYA 1BCCE 4HM4A 4QUPA 4U3FE 2QJKC 2YFLA 1L0LE 4HM1A 1WQLA 2QJPC 4NBCD 3GCEA 1JM1A 4H13D 1ZRTE 4NBAD 4P1BH 4NB8D 4AIVA 1VCKA 1VM9A 3H1JE 2YIUC 3L74E 1BE3E 2HMMA 2YFJA 2XRXA 1EZVE 1FQTA 2HMKA 4HM3A 4HKVA 4HM5A 2NVFA 2FYNC 2CKFA 4QDCA 2QPZA 3GOBA 4HM2A 4HM0A 3VMGD 1G8KB 2E75D 3H1LE 4NB9D 2JZAA 3VCPA 2NVGA 3H1HE 5KLIC 2YVJB 4HM6A 2BMQA 4NBBD 2XR8A 4HM7A 1PPJE 1SJGA 1VF5D 1NDOA 1G8JB 2HMLA 2GBXA 4NBDD 2HMOA 2E74D 4QUQA 3C0DA 2BCCE 1RIEA 3GL2A 5AEUA 1ULJA 1L0NE 2Q3WA 2ZYLA 3CWBE 1O7GA 3CXHE 2ZT9D 1O7HA
chains in the Genus database with same CATH topology
4QDFB 3GTEA 4NBFD 2BMOA 2NUKA 4NBGD 1SQBE 1NTME 2I7FA 1SQPE 2NUMA 1O7PA 3L71E 4EMJB 4H44D 2JO6A 4OGQD 3GTSA 1NTZE 4PV1D 2A06E 5AEWA 4HM8A 1P84E 2DE7D 2GBWA 2NWFA 4P1CH 5BOKA 2HMNA 3D89A 3L72E 3L73E 3N0QA 5KKZC 4QCKA 1SQVE 4QDFA 1NTKE 4AAYB 1UUWA 3EQQA 3AZCA 3GB4A 1Q90C 1UUVA 2IBZE 3GZXA 4QDDA 3TGUE 4H0LD 3VCAA 1PP9E 1KB9E 2B24A 4NBED 1O7MA 4NBHD 1SQXE 2HMJA 2YFIA 5CXMA 3BCCE 1KYOE 2D2CD 2XSOA 1EG9A 1NU1E 2DE5D 1NYKA 2B1XA 3H1IE 3GKEA 2FYUE 3FOUA 3VMID 3H1KE 2XSHA 1ULIA 2DE6D 2QJYC 3GZYA 3EN1A 3CX5E 4HJLA 2E76D 1O7WA 2BMRA 2E4QA 3L75E 1SQQE 1RFSA 3GL0A 2E4PA 3VMHD 4PD4E 5KLVE 4QURA 5HL4A 3L70E 1O7NA 2NVEA 3DQYA 1BCCE 4HM4A 4QUPA 4U3FE 2QJKC 2YFLA 1L0LE 4HM1A 1WQLA 2QJPC 4NBCD 3GCEA 1JM1A 4H13D 1ZRTE 4NBAD 4P1BH 4NB8D 4AIVA 1VCKA 1VM9A 3H1JE 2YIUC 3L74E 1BE3E 2HMMA 2YFJA 2XRXA 1EZVE 1FQTA 2HMKA 4HM3A 4HKVA 4HM5A 2NVFA 2FYNC 2CKFA 4QDCA 2QPZA 3GOBA 4HM2A 4HM0A 3VMGD 1G8KB 2E75D 3H1LE 4NB9D 2JZAA 3VCPA 2NVGA 3H1HE 5KLIC 2YVJB 4HM6A 2BMQA 4NBBD 2XR8A 4HM7A 1PPJE 1SJGA 1VF5D 1NDOA 1G8JB 2HMLA 2GBXA 4NBDD 2HMOA 2E74D 4QUQA 3C0DA 2BCCE 1RIEA 3GL2A 5AEUA 1ULJA 1L0NE 2Q3WA 2ZYLA 3CWBE 1O7GA 3CXHE 2ZT9D 1O7HA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4QDF B;  3GTE A;  4NBF D;  2BMO A;  2NUK A;  4NBG D;  1SQB E;  1NTM E;  2I7F A;  1SQP E;  2NUM A;  1O7P A;  3L71 E;  4EMJ B;  4H44 D;  2JO6 A;  4OGQ D;  3GTS A;  1NTZ E;  4PV1 D;  2A06 E;  5AEW A;  4HM8 A;  1P84 E;  2DE7 D;  2GBW A;  2NWF A;  4P1C H;  5BOK A;  2HMN A;  3D89 A;  3L72 E;  3L73 E;  3N0Q A;  5KKZ C;  4QCK A;  1SQV E;  4QDF A;  1NTK E;  4AAY B;  1UUW A;  3EQQ A;  3AZC A;  3GB4 A;  1Q90 C;  1UUV A;  2IBZ E;  3GZX A;  4QDD A;  3TGU E;  4H0L D;  3VCA A;  1PP9 E;  1KB9 E;  2B24 A;  4NBE D;  1O7M A;  4NBH D;  1SQX E;  2HMJ A;  2YFI A;  5CXM A;  3BCC E;  1KYO E;  2D2C D;  2XSO A;  1EG9 A;  1NU1 E;  2DE5 D;  1NYK A;  2B1X A;  3H1I E;  3GKE A;  2FYU E;  3FOU A;  3VMI D;  3H1K E;  2XSH A;  1ULI A;  2DE6 D;  2QJY C;  3GZY A;  3EN1 A;  3CX5 E;  4HJL A;  2E76 D;  1O7W A;  2BMR A;  2E4Q A;  3L75 E;  1SQQ E;  1RFS A;  3GL0 A;  2E4P A;  3VMH D;  4PD4 E;  5KLV E;  4QUR A;  5HL4 A;  3L70 E;  1O7N A;  2NVE A;  3DQY A;  1BCC E;  4HM4 A;  4QUP A;  4U3F E;  2QJK C;  2YFL A;  1L0L E;  4HM1 A;  1WQL A;  2QJP C;  4NBC D;  3GCE A;  1JM1 A;  4H13 D;  1ZRT E;  4NBA D;  4P1B H;  4NB8 D;  4AIV A;  1VCK A;  1VM9 A;  3H1J E;  2YIU C;  3L74 E;  1BE3 E;  2HMM A;  2YFJ A;  2XRX A;  1EZV E;  1FQT A;  2HMK A;  4HM3 A;  4HKV A;  4HM5 A;  2NVF A;  2FYN C;  2CKF A;  4QDC A;  2QPZ A;  3GOB A;  4HM2 A;  4HM0 A;  3VMG D;  1G8K B;  2E75 D;  3H1L E;  4NB9 D;  2JZA A;  3VCP A;  2NVG A;  3H1H E;  5KLI C;  2YVJ B;  4HM6 A;  2BMQ A;  4NBB D;  2XR8 A;  4HM7 A;  1PPJ E;  1SJG A;  1VF5 D;  1NDO A;  1G8J B;  2HML A;  2GBX A;  4NBD D;  2HMO A;  2E74 D;  4QUQ A;  3C0D A;  2BCC E;  1RIE A;  3GL2 A;  5AEU A;  1ULJ A;  1L0N E;  2Q3W A;  2ZYL A;  3CWB E;  1O7G A;  3CXH E;  2ZT9 D;  1O7H A; 
#chains in the Genus database with same CATH topology
 4QDF B;  3GTE A;  4NBF D;  2BMO A;  2NUK A;  4NBG D;  1SQB E;  1NTM E;  2I7F A;  1SQP E;  2NUM A;  1O7P A;  3L71 E;  4EMJ B;  4H44 D;  2JO6 A;  4OGQ D;  3GTS A;  1NTZ E;  4PV1 D;  2A06 E;  5AEW A;  4HM8 A;  1P84 E;  2DE7 D;  2GBW A;  2NWF A;  4P1C H;  5BOK A;  2HMN A;  3D89 A;  3L72 E;  3L73 E;  3N0Q A;  5KKZ C;  4QCK A;  1SQV E;  4QDF A;  1NTK E;  4AAY B;  1UUW A;  3EQQ A;  3AZC A;  3GB4 A;  1Q90 C;  1UUV A;  2IBZ E;  3GZX A;  4QDD A;  3TGU E;  4H0L D;  3VCA A;  1PP9 E;  1KB9 E;  2B24 A;  4NBE D;  1O7M A;  4NBH D;  1SQX E;  2HMJ A;  2YFI A;  5CXM A;  3BCC E;  1KYO E;  2D2C D;  2XSO A;  1EG9 A;  1NU1 E;  2DE5 D;  1NYK A;  2B1X A;  3H1I E;  3GKE A;  2FYU E;  3FOU A;  3VMI D;  3H1K E;  2XSH A;  1ULI A;  2DE6 D;  2QJY C;  3GZY A;  3EN1 A;  3CX5 E;  4HJL A;  2E76 D;  1O7W A;  2BMR A;  2E4Q A;  3L75 E;  1SQQ E;  1RFS A;  3GL0 A;  2E4P A;  3VMH D;  4PD4 E;  5KLV E;  4QUR A;  5HL4 A;  3L70 E;  1O7N A;  2NVE A;  3DQY A;  1BCC E;  4HM4 A;  4QUP A;  4U3F E;  2QJK C;  2YFL A;  1L0L E;  4HM1 A;  1WQL A;  2QJP C;  4NBC D;  3GCE A;  1JM1 A;  4H13 D;  1ZRT E;  4NBA D;  4P1B H;  4NB8 D;  4AIV A;  1VCK A;  1VM9 A;  3H1J E;  2YIU C;  3L74 E;  1BE3 E;  2HMM A;  2YFJ A;  2XRX A;  1EZV E;  1FQT A;  2HMK A;  4HM3 A;  4HKV A;  4HM5 A;  2NVF A;  2FYN C;  2CKF A;  4QDC A;  2QPZ A;  3GOB A;  4HM2 A;  4HM0 A;  3VMG D;  1G8K B;  2E75 D;  3H1L E;  4NB9 D;  2JZA A;  3VCP A;  2NVG A;  3H1H E;  5KLI C;  2YVJ B;  4HM6 A;  2BMQ A;  4NBB D;  2XR8 A;  4HM7 A;  1PPJ E;  1SJG A;  1VF5 D;  1NDO A;  1G8J B;  2HML A;  2GBX A;  4NBD D;  2HMO A;  2E74 D;  4QUQ A;  3C0D A;  2BCC E;  1RIE A;  3GL2 A;  5AEU A;  1ULJ A;  1L0N E;  2Q3W A;  2ZYL A;  3CWB E;  1O7G A;  3CXH E;  2ZT9 D;  1O7H A; 
#chains in the Genus database with same CATH homology
 4QDF B;  3GTE A;  4NBF D;  2BMO A;  2NUK A;  4NBG D;  1SQB E;  1NTM E;  2I7F A;  1SQP E;  2NUM A;  1O7P A;  3L71 E;  4EMJ B;  4H44 D;  2JO6 A;  4OGQ D;  3GTS A;  1NTZ E;  4PV1 D;  2A06 E;  5AEW A;  4HM8 A;  1P84 E;  2DE7 D;  2GBW A;  2NWF A;  4P1C H;  5BOK A;  2HMN A;  3D89 A;  3L72 E;  3L73 E;  3N0Q A;  5KKZ C;  4QCK A;  1SQV E;  4QDF A;  1NTK E;  4AAY B;  1UUW A;  3EQQ A;  3AZC A;  3GB4 A;  1Q90 C;  1UUV A;  2IBZ E;  3GZX A;  4QDD A;  3TGU E;  4H0L D;  3VCA A;  1PP9 E;  1KB9 E;  2B24 A;  4NBE D;  1O7M A;  4NBH D;  1SQX E;  2HMJ A;  2YFI A;  5CXM A;  3BCC E;  1KYO E;  2D2C D;  2XSO A;  1EG9 A;  1NU1 E;  2DE5 D;  1NYK A;  2B1X A;  3H1I E;  3GKE A;  2FYU E;  3FOU A;  3VMI D;  3H1K E;  2XSH A;  1ULI A;  2DE6 D;  2QJY C;  3GZY A;  3EN1 A;  3CX5 E;  4HJL A;  2E76 D;  1O7W A;  2BMR A;  2E4Q A;  3L75 E;  1SQQ E;  1RFS A;  3GL0 A;  2E4P A;  3VMH D;  4PD4 E;  5KLV E;  4QUR A;  5HL4 A;  3L70 E;  1O7N A;  2NVE A;  3DQY A;  1BCC E;  4HM4 A;  4QUP A;  4U3F E;  2QJK C;  2YFL A;  1L0L E;  4HM1 A;  1WQL A;  2QJP C;  4NBC D;  3GCE A;  1JM1 A;  4H13 D;  1ZRT E;  4NBA D;  4P1B H;  4NB8 D;  4AIV A;  1VCK A;  1VM9 A;  3H1J E;  2YIU C;  3L74 E;  1BE3 E;  2HMM A;  2YFJ A;  2XRX A;  1EZV E;  1FQT A;  2HMK A;  4HM3 A;  4HKV A;  4HM5 A;  2NVF A;  2FYN C;  2CKF A;  4QDC A;  2QPZ A;  3GOB A;  4HM2 A;  4HM0 A;  3VMG D;  1G8K B;  2E75 D;  3H1L E;  4NB9 D;  2JZA A;  3VCP A;  2NVG A;  3H1H E;  5KLI C;  2YVJ B;  4HM6 A;  2BMQ A;  4NBB D;  2XR8 A;  4HM7 A;  1PPJ E;  1SJG A;  1VF5 D;  1NDO A;  1G8J B;  2HML A;  2GBX A;  4NBD D;  2HMO A;  2E74 D;  4QUQ A;  3C0D A;  2BCC E;  1RIE A;  3GL2 A;  5AEU A;  1ULJ A;  1L0N E;  2Q3W A;  2ZYL A;  3CWB E;  1O7G A;  3CXH E;  2ZT9 D;  1O7H A; 
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