4NBGD

Oxygenase with gln282 replaced by tyr and ferredoxin complex of carbazole 1,9a-dioxygenase
Total Genus 17

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
17
sequence length
104
structure length
104
Chain Sequence
IWLKVCAASDMQPGTIRRVNRVGAAPLAVYRVGDQFYATEDTCTHGIASLSEGTLDGDVIECPFHGGAFNVCTGMPASSPCTVPLGVFEVEVKEGEVYVAGEKK

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTIV7 (95-98)S1 (6-10)S9 (91-96)S3 (27-35)TI1 (10-13)TII1 (15-18)TI2 (11-14)S2 (18-24)TII2 (24-27)S4 (38-43)TIV1 (34-37)TVIa1 (81-84)3H1 (53-55)TIV2 (58-61)S5 (57-59)S7 (71-73)TIV4 (66-69)TI4 (74-77)TIV3 (65-68)TIV5 (73-76)TIV6 (82-85)TI3 (46-49)S6 (62-64)S10 (99-106)Updating...
connected with : NaN
molecule tags Oxidoreductase
source organism Janthinobacterium
publication title Structural Basis of the Divergent Oxygenation Reactions Catalyzed by the Rieske Non-heme Iron Oxygenase, Carbazole 1,9a-Dioxygenase
pubmed doi rcsb
molecule keywords Terminal oxygenase component of carbazole
total genus 17
structure length 104
sequence length 104
chains with identical sequence E, F
ec nomenclature ec 1.14.12.22: Carbazole 1,9a-dioxygenase.
pdb deposition date 2013-10-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
D PF00355 Rieske Rieske [2Fe-2S] domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 4nbgD00
3GL0A 3CXHE 2I7FA 1O7GA 2XSHA 1SQVE 5BOKA 1BE3E 2QJKC 1O7HA 2FYNC 4HM0A 1O7PA 1L0NE 4QDFA 5KLIC 5KLVE 1SQXE 4HM3A 2BMOA 2Q3WA 4QUPA 3BCCE 2D2CD 3N0QA 1O7NA 1PPJE 4HM5A 4NB9D 4QCKA 5HL4A 2HMKA 4NBFD 2BCCE 4NBDD 3GKEA 3L71E 1NYKA 4QDDA 5KKZC 2HMLA 2IBZE 2YFJA 2HMJA 1Q90C 4HM7A 4NBAD 3CWBE 5CXMA 2NVEA 2NUMA 3VCPA 1NU1E 2XRXA 2B24A 2YFIA 1L0LE 4NBCD 3C0DA 1EG9A 4P1BH 2QJPC 3AZCA 2JO6A 2YIUC 2B1XA 3EN1A 1O7MA 2YVJB 3EQQA 4NBGD 4PV1D 4H0LD 3TGUE 3GL2A 2DE7D 1BCCE 4PD4E 1ULIA 1VCKA 2E74D 2NUKA 3GZYA 2FYUE 1ZRTE 3L75E 2E4PA 3GB4A 1PP9E 1NTZE 4AIVA 1KB9E 3VMID 3H1LE 1RIEA 1RFSA 2QPZA 2GBWA 3GTSA 2HMNA 3D89A 1WQLA 4NBED 4NB8D 4HJLA 4HM1A 3H1HE 3GTEA 2HMOA 4HM2A 2BMQA 2A06E 1VF5D 2YFLA 3L72E 2E76D 3FOUA 4QDCA 4HM6A 3DQYA 4P1CH 3VCAA 3GOBA 4HM4A 3L70E 1VM9A 3GZXA 2ZYLA 3VMHD 2NWFA 4H13D 1JM1A 4HM8A 4OGQD 3CX5E 1P84E 1O7WA 3L73E 2ZT9D 4NBBD 2NVGA 2HMMA 5AEUA 4QDFB 1UUVA 2XSOA 2GBXA 4HKVA 2XR8A 4U3FE 1ULJA 1UUWA 2QJYC 1G8KB 2E4QA 4NBHD 1G8JB 5AEWA 2DE5D 1NTME 3VMGD 1KYOE 1SQQE 3H1IE 4AAYB 3H1JE 2CKFA 1SQPE 1FQTA 2DE6D 4QURA 2BMRA 2NVFA 4H44D 1NTKE 3L74E 4EMJB 1SQBE 1EZVE 3H1KE 1NDOA 3GCEA 2E75D 2JZAA 1SJGA 4QUQA
chains in the Genus database with same CATH superfamily
3GL0A 3CXHE 2I7FA 1O7GA 2XSHA 1SQVE 5BOKA 1BE3E 2QJKC 1O7HA 2FYNC 4HM0A 1O7PA 1L0NE 4QDFA 5KLIC 5KLVE 1SQXE 4HM3A 2BMOA 2Q3WA 4QUPA 3BCCE 2D2CD 3N0QA 1O7NA 1PPJE 4HM5A 4NB9D 4QCKA 5HL4A 2HMKA 4NBFD 2BCCE 4NBDD 3GKEA 3L71E 1NYKA 4QDDA 5KKZC 2HMLA 2IBZE 2YFJA 2HMJA 1Q90C 4HM7A 4NBAD 3CWBE 5CXMA 2NVEA 2NUMA 3VCPA 1NU1E 2XRXA 2B24A 2YFIA 1L0LE 4NBCD 3C0DA 1EG9A 4P1BH 2QJPC 3AZCA 2JO6A 2YIUC 2B1XA 3EN1A 1O7MA 2YVJB 3EQQA 4NBGD 4PV1D 4H0LD 3TGUE 3GL2A 2DE7D 1BCCE 4PD4E 1ULIA 1VCKA 2E74D 2NUKA 3GZYA 2FYUE 1ZRTE 3L75E 2E4PA 3GB4A 1PP9E 1NTZE 4AIVA 1KB9E 3VMID 3H1LE 1RIEA 1RFSA 2QPZA 2GBWA 3GTSA 2HMNA 3D89A 1WQLA 4NBED 4NB8D 4HJLA 4HM1A 3H1HE 3GTEA 2HMOA 4HM2A 2BMQA 2A06E 1VF5D 2YFLA 3L72E 2E76D 3FOUA 4QDCA 4HM6A 3DQYA 4P1CH 3VCAA 3GOBA 4HM4A 3L70E 1VM9A 3GZXA 2ZYLA 3VMHD 2NWFA 4H13D 1JM1A 4HM8A 4OGQD 3CX5E 1P84E 1O7WA 3L73E 2ZT9D 4NBBD 2NVGA 2HMMA 5AEUA 4QDFB 1UUVA 2XSOA 2GBXA 4HKVA 2XR8A 4U3FE 1ULJA 1UUWA 2QJYC 1G8KB 2E4QA 4NBHD 1G8JB 5AEWA 2DE5D 1NTME 3VMGD 1KYOE 1SQQE 3H1IE 4AAYB 3H1JE 2CKFA 1SQPE 1FQTA 2DE6D 4QURA 2BMRA 2NVFA 4H44D 1NTKE 3L74E 4EMJB 1SQBE 1EZVE 3H1KE 1NDOA 3GCEA 2E75D 2JZAA 1SJGA 4QUQA
chains in the Genus database with same CATH topology
3GL0A 3CXHE 2I7FA 1O7GA 2XSHA 1SQVE 5BOKA 1BE3E 2QJKC 1O7HA 2FYNC 4HM0A 1O7PA 1L0NE 4QDFA 5KLIC 5KLVE 1SQXE 4HM3A 2BMOA 2Q3WA 4QUPA 3BCCE 2D2CD 3N0QA 1O7NA 1PPJE 4HM5A 4NB9D 4QCKA 5HL4A 2HMKA 4NBFD 2BCCE 4NBDD 3GKEA 3L71E 1NYKA 4QDDA 5KKZC 2HMLA 2IBZE 2YFJA 2HMJA 1Q90C 4HM7A 4NBAD 3CWBE 5CXMA 2NVEA 2NUMA 3VCPA 1NU1E 2XRXA 2B24A 2YFIA 1L0LE 4NBCD 3C0DA 1EG9A 4P1BH 2QJPC 3AZCA 2JO6A 2YIUC 2B1XA 3EN1A 1O7MA 2YVJB 3EQQA 4NBGD 4PV1D 4H0LD 3TGUE 3GL2A 2DE7D 1BCCE 4PD4E 1ULIA 1VCKA 2E74D 2NUKA 3GZYA 2FYUE 1ZRTE 3L75E 2E4PA 3GB4A 1PP9E 1NTZE 4AIVA 1KB9E 3VMID 3H1LE 1RIEA 1RFSA 2QPZA 2GBWA 3GTSA 2HMNA 3D89A 1WQLA 4NBED 4NB8D 4HJLA 4HM1A 3H1HE 3GTEA 2HMOA 4HM2A 2BMQA 2A06E 1VF5D 2YFLA 3L72E 2E76D 3FOUA 4QDCA 4HM6A 3DQYA 4P1CH 3VCAA 3GOBA 4HM4A 3L70E 1VM9A 3GZXA 2ZYLA 3VMHD 2NWFA 4H13D 1JM1A 4HM8A 4OGQD 3CX5E 1P84E 1O7WA 3L73E 2ZT9D 4NBBD 2NVGA 2HMMA 5AEUA 4QDFB 1UUVA 2XSOA 2GBXA 4HKVA 2XR8A 4U3FE 1ULJA 1UUWA 2QJYC 1G8KB 2E4QA 4NBHD 1G8JB 5AEWA 2DE5D 1NTME 3VMGD 1KYOE 1SQQE 3H1IE 4AAYB 3H1JE 2CKFA 1SQPE 1FQTA 2DE6D 4QURA 2BMRA 2NVFA 4H44D 1NTKE 3L74E 4EMJB 1SQBE 1EZVE 3H1KE 1NDOA 3GCEA 2E75D 2JZAA 1SJGA 4QUQA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3GL0 A;  3CXH E;  2I7F A;  1O7G A;  2XSH A;  1SQV E;  5BOK A;  1BE3 E;  2QJK C;  1O7H A;  2FYN C;  4HM0 A;  1O7P A;  1L0N E;  4QDF A;  5KLI C;  5KLV E;  1SQX E;  4HM3 A;  2BMO A;  2Q3W A;  4QUP A;  3BCC E;  2D2C D;  3N0Q A;  1O7N A;  1PPJ E;  4HM5 A;  4NB9 D;  4QCK A;  5HL4 A;  2HMK A;  4NBF D;  2BCC E;  4NBD D;  3GKE A;  3L71 E;  1NYK A;  4QDD A;  5KKZ C;  2HML A;  2IBZ E;  2YFJ A;  2HMJ A;  1Q90 C;  4HM7 A;  4NBA D;  3CWB E;  5CXM A;  2NVE A;  2NUM A;  3VCP A;  1NU1 E;  2XRX A;  2B24 A;  2YFI A;  1L0L E;  4NBC D;  3C0D A;  1EG9 A;  4P1B H;  2QJP C;  3AZC A;  2JO6 A;  2YIU C;  2B1X A;  3EN1 A;  1O7M A;  2YVJ B;  3EQQ A;  4NBG D;  4PV1 D;  4H0L D;  3TGU E;  3GL2 A;  2DE7 D;  1BCC E;  4PD4 E;  1ULI A;  1VCK A;  2E74 D;  2NUK A;  3GZY A;  2FYU E;  1ZRT E;  3L75 E;  2E4P A;  3GB4 A;  1PP9 E;  1NTZ E;  4AIV A;  1KB9 E;  3VMI D;  3H1L E;  1RIE A;  1RFS A;  2QPZ A;  2GBW A;  3GTS A;  2HMN A;  3D89 A;  1WQL A;  4NBE D;  4NB8 D;  4HJL A;  4HM1 A;  3H1H E;  3GTE A;  2HMO A;  4HM2 A;  2BMQ A;  2A06 E;  1VF5 D;  2YFL A;  3L72 E;  2E76 D;  3FOU A;  4QDC A;  4HM6 A;  3DQY A;  4P1C H;  3VCA A;  3GOB A;  4HM4 A;  3L70 E;  1VM9 A;  3GZX A;  2ZYL A;  3VMH D;  2NWF A;  4H13 D;  1JM1 A;  4HM8 A;  4OGQ D;  3CX5 E;  1P84 E;  1O7W A;  3L73 E;  2ZT9 D;  4NBB D;  2NVG A;  2HMM A;  5AEU A;  4QDF B;  1UUV A;  2XSO A;  2GBX A;  4HKV A;  2XR8 A;  4U3F E;  1ULJ A;  1UUW A;  2QJY C;  1G8K B;  2E4Q A;  4NBH D;  1G8J B;  5AEW A;  2DE5 D;  1NTM E;  3VMG D;  1KYO E;  1SQQ E;  3H1I E;  4AAY B;  3H1J E;  2CKF A;  1SQP E;  1FQT A;  2DE6 D;  4QUR A;  2BMR A;  2NVF A;  4H44 D;  1NTK E;  3L74 E;  4EMJ B;  1SQB E;  1EZV E;  3H1K E;  1NDO A;  3GCE A;  2E75 D;  2JZA A;  1SJG A;  4QUQ A; 
#chains in the Genus database with same CATH topology
 3GL0 A;  3CXH E;  2I7F A;  1O7G A;  2XSH A;  1SQV E;  5BOK A;  1BE3 E;  2QJK C;  1O7H A;  2FYN C;  4HM0 A;  1O7P A;  1L0N E;  4QDF A;  5KLI C;  5KLV E;  1SQX E;  4HM3 A;  2BMO A;  2Q3W A;  4QUP A;  3BCC E;  2D2C D;  3N0Q A;  1O7N A;  1PPJ E;  4HM5 A;  4NB9 D;  4QCK A;  5HL4 A;  2HMK A;  4NBF D;  2BCC E;  4NBD D;  3GKE A;  3L71 E;  1NYK A;  4QDD A;  5KKZ C;  2HML A;  2IBZ E;  2YFJ A;  2HMJ A;  1Q90 C;  4HM7 A;  4NBA D;  3CWB E;  5CXM A;  2NVE A;  2NUM A;  3VCP A;  1NU1 E;  2XRX A;  2B24 A;  2YFI A;  1L0L E;  4NBC D;  3C0D A;  1EG9 A;  4P1B H;  2QJP C;  3AZC A;  2JO6 A;  2YIU C;  2B1X A;  3EN1 A;  1O7M A;  2YVJ B;  3EQQ A;  4NBG D;  4PV1 D;  4H0L D;  3TGU E;  3GL2 A;  2DE7 D;  1BCC E;  4PD4 E;  1ULI A;  1VCK A;  2E74 D;  2NUK A;  3GZY A;  2FYU E;  1ZRT E;  3L75 E;  2E4P A;  3GB4 A;  1PP9 E;  1NTZ E;  4AIV A;  1KB9 E;  3VMI D;  3H1L E;  1RIE A;  1RFS A;  2QPZ A;  2GBW A;  3GTS A;  2HMN A;  3D89 A;  1WQL A;  4NBE D;  4NB8 D;  4HJL A;  4HM1 A;  3H1H E;  3GTE A;  2HMO A;  4HM2 A;  2BMQ A;  2A06 E;  1VF5 D;  2YFL A;  3L72 E;  2E76 D;  3FOU A;  4QDC A;  4HM6 A;  3DQY A;  4P1C H;  3VCA A;  3GOB A;  4HM4 A;  3L70 E;  1VM9 A;  3GZX A;  2ZYL A;  3VMH D;  2NWF A;  4H13 D;  1JM1 A;  4HM8 A;  4OGQ D;  3CX5 E;  1P84 E;  1O7W A;  3L73 E;  2ZT9 D;  4NBB D;  2NVG A;  2HMM A;  5AEU A;  4QDF B;  1UUV A;  2XSO A;  2GBX A;  4HKV A;  2XR8 A;  4U3F E;  1ULJ A;  1UUW A;  2QJY C;  1G8K B;  2E4Q A;  4NBH D;  1G8J B;  5AEW A;  2DE5 D;  1NTM E;  3VMG D;  1KYO E;  1SQQ E;  3H1I E;  4AAY B;  3H1J E;  2CKF A;  1SQP E;  1FQT A;  2DE6 D;  4QUR A;  2BMR A;  2NVF A;  4H44 D;  1NTK E;  3L74 E;  4EMJ B;  1SQB E;  1EZV E;  3H1K E;  1NDO A;  3GCE A;  2E75 D;  2JZA A;  1SJG A;  4QUQ A; 
#chains in the Genus database with same CATH homology
 3GL0 A;  3CXH E;  2I7F A;  1O7G A;  2XSH A;  1SQV E;  5BOK A;  1BE3 E;  2QJK C;  1O7H A;  2FYN C;  4HM0 A;  1O7P A;  1L0N E;  4QDF A;  5KLI C;  5KLV E;  1SQX E;  4HM3 A;  2BMO A;  2Q3W A;  4QUP A;  3BCC E;  2D2C D;  3N0Q A;  1O7N A;  1PPJ E;  4HM5 A;  4NB9 D;  4QCK A;  5HL4 A;  2HMK A;  4NBF D;  2BCC E;  4NBD D;  3GKE A;  3L71 E;  1NYK A;  4QDD A;  5KKZ C;  2HML A;  2IBZ E;  2YFJ A;  2HMJ A;  1Q90 C;  4HM7 A;  4NBA D;  3CWB E;  5CXM A;  2NVE A;  2NUM A;  3VCP A;  1NU1 E;  2XRX A;  2B24 A;  2YFI A;  1L0L E;  4NBC D;  3C0D A;  1EG9 A;  4P1B H;  2QJP C;  3AZC A;  2JO6 A;  2YIU C;  2B1X A;  3EN1 A;  1O7M A;  2YVJ B;  3EQQ A;  4NBG D;  4PV1 D;  4H0L D;  3TGU E;  3GL2 A;  2DE7 D;  1BCC E;  4PD4 E;  1ULI A;  1VCK A;  2E74 D;  2NUK A;  3GZY A;  2FYU E;  1ZRT E;  3L75 E;  2E4P A;  3GB4 A;  1PP9 E;  1NTZ E;  4AIV A;  1KB9 E;  3VMI D;  3H1L E;  1RIE A;  1RFS A;  2QPZ A;  2GBW A;  3GTS A;  2HMN A;  3D89 A;  1WQL A;  4NBE D;  4NB8 D;  4HJL A;  4HM1 A;  3H1H E;  3GTE A;  2HMO A;  4HM2 A;  2BMQ A;  2A06 E;  1VF5 D;  2YFL A;  3L72 E;  2E76 D;  3FOU A;  4QDC A;  4HM6 A;  3DQY A;  4P1C H;  3VCA A;  3GOB A;  4HM4 A;  3L70 E;  1VM9 A;  3GZX A;  2ZYL A;  3VMH D;  2NWF A;  4H13 D;  1JM1 A;  4HM8 A;  4OGQ D;  3CX5 E;  1P84 E;  1O7W A;  3L73 E;  2ZT9 D;  4NBB D;  2NVG A;  2HMM A;  5AEU A;  4QDF B;  1UUV A;  2XSO A;  2GBX A;  4HKV A;  2XR8 A;  4U3F E;  1ULJ A;  1UUW A;  2QJY C;  1G8K B;  2E4Q A;  4NBH D;  1G8J B;  5AEW A;  2DE5 D;  1NTM E;  3VMG D;  1KYO E;  1SQQ E;  3H1I E;  4AAY B;  3H1J E;  2CKF A;  1SQP E;  1FQT A;  2DE6 D;  4QUR A;  2BMR A;  2NVF A;  4H44 D;  1NTK E;  3L74 E;  4EMJ B;  1SQB E;  1EZV E;  3H1K E;  1NDO A;  3GCE A;  2E75 D;  2JZA A;  1SJG A;  4QUQ A; 
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