4P1BH

Crystal structure of the toluene 4-monooxygenase hydroxylase-ferredoxin c7s e16c c84a c85a variant electron-transfer complex
Total Genus 24

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
24
sequence length
111
structure length
111
Chain Sequence
SFEKISSLDDIWVGCMETFETSDGTEVLIVNSEEHGVKAYQAMCPHQEILLSEGSYEGGVITCRAHLWTFNDGTGHGINPDDAALAEYPVEVKGDDIYVSTKGILPNKAHS

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTI3 (22-25)S13 (97-100)S1 (4-8)TIV7 (93-96)S3 (27-33)TI1 (8-11)TI2 (9-12)TII1 (13-16)S2 (16-21)3H1 (52-54)S9 (70-72)S4 (37-42)TI6 (72-75)S11 (88-89)S6 (50-51)S5 (44-45)TIV2 (46-49)TIV1 (45-48)TIV4 (64-67)S8 (61-63)S7 (56-58)TIV3 (57-60)TIV5 (65-68)TI7 (73-76)TVIII2 (78-81)S10 (78-80)TI8 (81-84)TIV6 (79-82)S12 (91-94)TII2 (102-105)TI4 (33-36)Updating...
connected with : NaN
molecule tags Oxidoreductase
source organism Pseudomonas mendocina
publication title Structural basis for biomolecular recognition in overlapping binding sites in a diiron enzyme system.
pubmed doi rcsb
molecule keywords Toluene-4-monooxygenase system protein A
total genus 24
structure length 111
sequence length 111
chains with identical sequence I
ec nomenclature
pdb deposition date 2014-02-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
H PF00355 Rieske Rieske [2Fe-2S] domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 4p1bH00
3L70E 4HM0A 2YIUC 2JO6A 3CX5E 2IBZE 1BE3E 1P84E 5AEWA 1NDOA 2HMJA 4HKVA 3H1IE 2E76D 1NTKE 2E74D 4H44D 3H1HE 4U3FE 2HMNA 3L73E 1O7HA 3GZXA 2JZAA 4QURA 2E4PA 1KB9E 2FYNC 2HMLA 4OGQD 4NBHD 4NBGD 1L0NE 5KLIC 3GTSA 3VCAA 1UUVA 2B1XA 2BMRA 4HM1A 2NVEA 2YFJA 3GTEA 3VMHD 1O7WA 3BCCE 3L75E 4EMJB 1WQLA 2FYUE 1NTZE 1UUWA 3EN1A 3GOBA 1KYOE 2NVGA 3VMGD 3H1KE 3N0QA 3H1LE 3GL0A 2DE5D 4QUPA 4HJLA 2B24A 2XRXA 5AEUA 3GB4A 2I7FA 1NYKA 3GZYA 3CWBE 4HM3A 4P1BH 1RIEA 3GCEA 4H13D 5KLVE 1BCCE 2GBXA 4NBED 2HMMA 4NBFD 1SQVE 4HM8A 3TGUE 4PV1D 4NBCD 3H1JE 4HM4A 4AAYB 2A06E 4NB8D 4PD4E 2NVFA 5BOKA 2BMQA 2Q3WA 3GL2A 2XSHA 1ZRTE 2YFLA 1NTME 1EG9A 4QDCA 4NBBD 1PPJE 1ULJA 3AZCA 4HM5A 1Q90C 2NUKA 4HM2A 4QDFB 2NWFA 4NBAD 2E4QA 2QJKC 2NUMA 1VCKA 4P1CH 4QCKA 1SQXE 5KKZC 3CXHE 1SQBE 1G8JB 3VCPA 2YVJB 2XSOA 1JM1A 4NB9D 4AIVA 2BMOA 3C0DA 3EQQA 1ULIA 2GBWA 2ZT9D 3D89A 1SJGA 2YFIA 2D2CD 2CKFA 1PP9E 1SQQE 2ZYLA 1NU1E 2BCCE 1G8KB 1VF5D 2HMKA 1EZVE 1L0LE 3L72E 1O7GA 2E75D 4NBDD 3DQYA 3L74E 2HMOA 1O7PA 2DE6D 2DE7D 1FQTA 4QUQA 5CXMA 2QJYC 3FOUA 3L71E 4HM6A 1O7MA 1SQPE 2XR8A 1VM9A 4QDDA 1RFSA 4QDFA 1O7NA 3VMID 4H0LD 3GKEA 5HL4A 2QJPC 2QPZA 4HM7A
chains in the Genus database with same CATH superfamily
3L70E 4HM0A 2YIUC 2JO6A 3CX5E 2IBZE 1BE3E 1P84E 5AEWA 1NDOA 2HMJA 4HKVA 3H1IE 2E76D 1NTKE 2E74D 4H44D 3H1HE 4U3FE 2HMNA 3L73E 1O7HA 3GZXA 2JZAA 4QURA 2E4PA 1KB9E 2FYNC 2HMLA 4OGQD 4NBHD 4NBGD 1L0NE 5KLIC 3GTSA 3VCAA 1UUVA 2B1XA 2BMRA 4HM1A 2NVEA 2YFJA 3GTEA 3VMHD 1O7WA 3BCCE 3L75E 4EMJB 1WQLA 2FYUE 1NTZE 1UUWA 3EN1A 3GOBA 1KYOE 2NVGA 3VMGD 3H1KE 3N0QA 3H1LE 3GL0A 2DE5D 4QUPA 4HJLA 2B24A 2XRXA 5AEUA 3GB4A 2I7FA 1NYKA 3GZYA 3CWBE 4HM3A 4P1BH 1RIEA 3GCEA 4H13D 5KLVE 1BCCE 2GBXA 4NBED 2HMMA 4NBFD 1SQVE 4HM8A 3TGUE 4PV1D 4NBCD 3H1JE 4HM4A 4AAYB 2A06E 4NB8D 4PD4E 2NVFA 5BOKA 2BMQA 2Q3WA 3GL2A 2XSHA 1ZRTE 2YFLA 1NTME 1EG9A 4QDCA 4NBBD 1PPJE 1ULJA 3AZCA 4HM5A 1Q90C 2NUKA 4HM2A 4QDFB 2NWFA 4NBAD 2E4QA 2QJKC 2NUMA 1VCKA 4P1CH 4QCKA 1SQXE 5KKZC 3CXHE 1SQBE 1G8JB 3VCPA 2YVJB 2XSOA 1JM1A 4NB9D 4AIVA 2BMOA 3C0DA 3EQQA 1ULIA 2GBWA 2ZT9D 3D89A 1SJGA 2YFIA 2D2CD 2CKFA 1PP9E 1SQQE 2ZYLA 1NU1E 2BCCE 1G8KB 1VF5D 2HMKA 1EZVE 1L0LE 3L72E 1O7GA 2E75D 4NBDD 3DQYA 3L74E 2HMOA 1O7PA 2DE6D 2DE7D 1FQTA 4QUQA 5CXMA 2QJYC 3FOUA 3L71E 4HM6A 1O7MA 1SQPE 2XR8A 1VM9A 4QDDA 1RFSA 4QDFA 1O7NA 3VMID 4H0LD 3GKEA 5HL4A 2QJPC 2QPZA 4HM7A
chains in the Genus database with same CATH topology
3L70E 4HM0A 2YIUC 2JO6A 3CX5E 2IBZE 1BE3E 1P84E 5AEWA 1NDOA 2HMJA 4HKVA 3H1IE 2E76D 1NTKE 2E74D 4H44D 3H1HE 4U3FE 2HMNA 3L73E 1O7HA 3GZXA 2JZAA 4QURA 2E4PA 1KB9E 2FYNC 2HMLA 4OGQD 4NBHD 4NBGD 1L0NE 5KLIC 3GTSA 3VCAA 1UUVA 2B1XA 2BMRA 4HM1A 2NVEA 2YFJA 3GTEA 3VMHD 1O7WA 3BCCE 3L75E 4EMJB 1WQLA 2FYUE 1NTZE 1UUWA 3EN1A 3GOBA 1KYOE 2NVGA 3VMGD 3H1KE 3N0QA 3H1LE 3GL0A 2DE5D 4QUPA 4HJLA 2B24A 2XRXA 5AEUA 3GB4A 2I7FA 1NYKA 3GZYA 3CWBE 4HM3A 4P1BH 1RIEA 3GCEA 4H13D 5KLVE 1BCCE 2GBXA 4NBED 2HMMA 4NBFD 1SQVE 4HM8A 3TGUE 4PV1D 4NBCD 3H1JE 4HM4A 4AAYB 2A06E 4NB8D 4PD4E 2NVFA 5BOKA 2BMQA 2Q3WA 3GL2A 2XSHA 1ZRTE 2YFLA 1NTME 1EG9A 4QDCA 4NBBD 1PPJE 1ULJA 3AZCA 4HM5A 1Q90C 2NUKA 4HM2A 4QDFB 2NWFA 4NBAD 2E4QA 2QJKC 2NUMA 1VCKA 4P1CH 4QCKA 1SQXE 5KKZC 3CXHE 1SQBE 1G8JB 3VCPA 2YVJB 2XSOA 1JM1A 4NB9D 4AIVA 2BMOA 3C0DA 3EQQA 1ULIA 2GBWA 2ZT9D 3D89A 1SJGA 2YFIA 2D2CD 2CKFA 1PP9E 1SQQE 2ZYLA 1NU1E 2BCCE 1G8KB 1VF5D 2HMKA 1EZVE 1L0LE 3L72E 1O7GA 2E75D 4NBDD 3DQYA 3L74E 2HMOA 1O7PA 2DE6D 2DE7D 1FQTA 4QUQA 5CXMA 2QJYC 3FOUA 3L71E 4HM6A 1O7MA 1SQPE 2XR8A 1VM9A 4QDDA 1RFSA 4QDFA 1O7NA 3VMID 4H0LD 3GKEA 5HL4A 2QJPC 2QPZA 4HM7A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3L70 E;  4HM0 A;  2YIU C;  2JO6 A;  3CX5 E;  2IBZ E;  1BE3 E;  1P84 E;  5AEW A;  1NDO A;  2HMJ A;  4HKV A;  3H1I E;  2E76 D;  1NTK E;  2E74 D;  4H44 D;  3H1H E;  4U3F E;  2HMN A;  3L73 E;  1O7H A;  3GZX A;  2JZA A;  4QUR A;  2E4P A;  1KB9 E;  2FYN C;  2HML A;  4OGQ D;  4NBH D;  4NBG D;  1L0N E;  5KLI C;  3GTS A;  3VCA A;  1UUV A;  2B1X A;  2BMR A;  4HM1 A;  2NVE A;  2YFJ A;  3GTE A;  3VMH D;  1O7W A;  3BCC E;  3L75 E;  4EMJ B;  1WQL A;  2FYU E;  1NTZ E;  1UUW A;  3EN1 A;  3GOB A;  1KYO E;  2NVG A;  3VMG D;  3H1K E;  3N0Q A;  3H1L E;  3GL0 A;  2DE5 D;  4QUP A;  4HJL A;  2B24 A;  2XRX A;  5AEU A;  3GB4 A;  2I7F A;  1NYK A;  3GZY A;  3CWB E;  4HM3 A;  4P1B H;  1RIE A;  3GCE A;  4H13 D;  5KLV E;  1BCC E;  2GBX A;  4NBE D;  2HMM A;  4NBF D;  1SQV E;  4HM8 A;  3TGU E;  4PV1 D;  4NBC D;  3H1J E;  4HM4 A;  4AAY B;  2A06 E;  4NB8 D;  4PD4 E;  2NVF A;  5BOK A;  2BMQ A;  2Q3W A;  3GL2 A;  2XSH A;  1ZRT E;  2YFL A;  1NTM E;  1EG9 A;  4QDC A;  4NBB D;  1PPJ E;  1ULJ A;  3AZC A;  4HM5 A;  1Q90 C;  2NUK A;  4HM2 A;  4QDF B;  2NWF A;  4NBA D;  2E4Q A;  2QJK C;  2NUM A;  1VCK A;  4P1C H;  4QCK A;  1SQX E;  5KKZ C;  3CXH E;  1SQB E;  1G8J B;  3VCP A;  2YVJ B;  2XSO A;  1JM1 A;  4NB9 D;  4AIV A;  2BMO A;  3C0D A;  3EQQ A;  1ULI A;  2GBW A;  2ZT9 D;  3D89 A;  1SJG A;  2YFI A;  2D2C D;  2CKF A;  1PP9 E;  1SQQ E;  2ZYL A;  1NU1 E;  2BCC E;  1G8K B;  1VF5 D;  2HMK A;  1EZV E;  1L0L E;  3L72 E;  1O7G A;  2E75 D;  4NBD D;  3DQY A;  3L74 E;  2HMO A;  1O7P A;  2DE6 D;  2DE7 D;  1FQT A;  4QUQ A;  5CXM A;  2QJY C;  3FOU A;  3L71 E;  4HM6 A;  1O7M A;  1SQP E;  2XR8 A;  1VM9 A;  4QDD A;  1RFS A;  4QDF A;  1O7N A;  3VMI D;  4H0L D;  3GKE A;  5HL4 A;  2QJP C;  2QPZ A;  4HM7 A; 
#chains in the Genus database with same CATH topology
 3L70 E;  4HM0 A;  2YIU C;  2JO6 A;  3CX5 E;  2IBZ E;  1BE3 E;  1P84 E;  5AEW A;  1NDO A;  2HMJ A;  4HKV A;  3H1I E;  2E76 D;  1NTK E;  2E74 D;  4H44 D;  3H1H E;  4U3F E;  2HMN A;  3L73 E;  1O7H A;  3GZX A;  2JZA A;  4QUR A;  2E4P A;  1KB9 E;  2FYN C;  2HML A;  4OGQ D;  4NBH D;  4NBG D;  1L0N E;  5KLI C;  3GTS A;  3VCA A;  1UUV A;  2B1X A;  2BMR A;  4HM1 A;  2NVE A;  2YFJ A;  3GTE A;  3VMH D;  1O7W A;  3BCC E;  3L75 E;  4EMJ B;  1WQL A;  2FYU E;  1NTZ E;  1UUW A;  3EN1 A;  3GOB A;  1KYO E;  2NVG A;  3VMG D;  3H1K E;  3N0Q A;  3H1L E;  3GL0 A;  2DE5 D;  4QUP A;  4HJL A;  2B24 A;  2XRX A;  5AEU A;  3GB4 A;  2I7F A;  1NYK A;  3GZY A;  3CWB E;  4HM3 A;  4P1B H;  1RIE A;  3GCE A;  4H13 D;  5KLV E;  1BCC E;  2GBX A;  4NBE D;  2HMM A;  4NBF D;  1SQV E;  4HM8 A;  3TGU E;  4PV1 D;  4NBC D;  3H1J E;  4HM4 A;  4AAY B;  2A06 E;  4NB8 D;  4PD4 E;  2NVF A;  5BOK A;  2BMQ A;  2Q3W A;  3GL2 A;  2XSH A;  1ZRT E;  2YFL A;  1NTM E;  1EG9 A;  4QDC A;  4NBB D;  1PPJ E;  1ULJ A;  3AZC A;  4HM5 A;  1Q90 C;  2NUK A;  4HM2 A;  4QDF B;  2NWF A;  4NBA D;  2E4Q A;  2QJK C;  2NUM A;  1VCK A;  4P1C H;  4QCK A;  1SQX E;  5KKZ C;  3CXH E;  1SQB E;  1G8J B;  3VCP A;  2YVJ B;  2XSO A;  1JM1 A;  4NB9 D;  4AIV A;  2BMO A;  3C0D A;  3EQQ A;  1ULI A;  2GBW A;  2ZT9 D;  3D89 A;  1SJG A;  2YFI A;  2D2C D;  2CKF A;  1PP9 E;  1SQQ E;  2ZYL A;  1NU1 E;  2BCC E;  1G8K B;  1VF5 D;  2HMK A;  1EZV E;  1L0L E;  3L72 E;  1O7G A;  2E75 D;  4NBD D;  3DQY A;  3L74 E;  2HMO A;  1O7P A;  2DE6 D;  2DE7 D;  1FQT A;  4QUQ A;  5CXM A;  2QJY C;  3FOU A;  3L71 E;  4HM6 A;  1O7M A;  1SQP E;  2XR8 A;  1VM9 A;  4QDD A;  1RFS A;  4QDF A;  1O7N A;  3VMI D;  4H0L D;  3GKE A;  5HL4 A;  2QJP C;  2QPZ A;  4HM7 A; 
#chains in the Genus database with same CATH homology
 3L70 E;  4HM0 A;  2YIU C;  2JO6 A;  3CX5 E;  2IBZ E;  1BE3 E;  1P84 E;  5AEW A;  1NDO A;  2HMJ A;  4HKV A;  3H1I E;  2E76 D;  1NTK E;  2E74 D;  4H44 D;  3H1H E;  4U3F E;  2HMN A;  3L73 E;  1O7H A;  3GZX A;  2JZA A;  4QUR A;  2E4P A;  1KB9 E;  2FYN C;  2HML A;  4OGQ D;  4NBH D;  4NBG D;  1L0N E;  5KLI C;  3GTS A;  3VCA A;  1UUV A;  2B1X A;  2BMR A;  4HM1 A;  2NVE A;  2YFJ A;  3GTE A;  3VMH D;  1O7W A;  3BCC E;  3L75 E;  4EMJ B;  1WQL A;  2FYU E;  1NTZ E;  1UUW A;  3EN1 A;  3GOB A;  1KYO E;  2NVG A;  3VMG D;  3H1K E;  3N0Q A;  3H1L E;  3GL0 A;  2DE5 D;  4QUP A;  4HJL A;  2B24 A;  2XRX A;  5AEU A;  3GB4 A;  2I7F A;  1NYK A;  3GZY A;  3CWB E;  4HM3 A;  4P1B H;  1RIE A;  3GCE A;  4H13 D;  5KLV E;  1BCC E;  2GBX A;  4NBE D;  2HMM A;  4NBF D;  1SQV E;  4HM8 A;  3TGU E;  4PV1 D;  4NBC D;  3H1J E;  4HM4 A;  4AAY B;  2A06 E;  4NB8 D;  4PD4 E;  2NVF A;  5BOK A;  2BMQ A;  2Q3W A;  3GL2 A;  2XSH A;  1ZRT E;  2YFL A;  1NTM E;  1EG9 A;  4QDC A;  4NBB D;  1PPJ E;  1ULJ A;  3AZC A;  4HM5 A;  1Q90 C;  2NUK A;  4HM2 A;  4QDF B;  2NWF A;  4NBA D;  2E4Q A;  2QJK C;  2NUM A;  1VCK A;  4P1C H;  4QCK A;  1SQX E;  5KKZ C;  3CXH E;  1SQB E;  1G8J B;  3VCP A;  2YVJ B;  2XSO A;  1JM1 A;  4NB9 D;  4AIV A;  2BMO A;  3C0D A;  3EQQ A;  1ULI A;  2GBW A;  2ZT9 D;  3D89 A;  1SJG A;  2YFI A;  2D2C D;  2CKF A;  1PP9 E;  1SQQ E;  2ZYL A;  1NU1 E;  2BCC E;  1G8K B;  1VF5 D;  2HMK A;  1EZV E;  1L0L E;  3L72 E;  1O7G A;  2E75 D;  4NBD D;  3DQY A;  3L74 E;  2HMO A;  1O7P A;  2DE6 D;  2DE7 D;  1FQT A;  4QUQ A;  5CXM A;  2QJY C;  3FOU A;  3L71 E;  4HM6 A;  1O7M A;  1SQP E;  2XR8 A;  1VM9 A;  4QDD A;  1RFS A;  4QDF A;  1O7N A;  3VMI D;  4H0L D;  3GKE A;  5HL4 A;  2QJP C;  2QPZ A;  4HM7 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

Application loaded.