4AIV | Genus

Total Genus 21

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	21
sequence length	113
structure length	113
Chain Sequence	DIQVWTTACAYDHLIPGRGVGVLLDDGSQVALFRLDDGSVHAVGNVDPFSGAAVMSRGIVGDRGGRAMVQSPILKQAFALDDGSCLDDPRVSVPVYPARVTPEGRIQVARVAV

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Oxidoreductase
source organism	Mycobacterium tuberculosis
publication title	Crystal Structure of Nird, the Small Subunit of the Nitrite Reductase Nirbd from Mycobacterium Tuberculosis, at 2.0 Angstrom Resolution pubmed doi rcsb
molecule keywords	PROBABLE NITRITE REDUCTASE [NAD(P)H] SMALL SUBUNIT NIRD
total genus	21
structure length	113
sequence length	113
ec nomenclature	ec 1.6.6.4: Transferred entry: 1.7.1.4.
pdb deposition date	2012-02-15

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF13806	Rieske_2	Rieske-like [2Fe-2S] domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.102.10.10	Mainly Beta	3-layer Sandwich	Rieske Iron-sulfur Protein	Rieske [2Fe-2S] iron-sulphur domain	4aivA00

1SQPE 4PD4E 3H1HE 4QDDA 4AAYB 1O7GA 1KYOE 1O7PA 2FYUE 5AEWA 1L0NE 1NYKA 1VM9A 2NUMA 4NBED 4NBGD 3H1IE 3DQYA 4HJLA 1SQQE 3GB4A 4HM1A 2ZYLA 1SJGA 1O7NA 1BE3E 4OGQD 1NDOA 2YFLA 1WQLA 1NTME 3GTSA 4AIVA 4NBBD 2JO6A 3GZYA 2QJYC 3CX5E 1ULJA 2CKFA 2BCCE 2E4PA 4P1CH 3GTEA 1NTKE 3VMHD 2HMNA 4U3FE 1O7HA 4QURA 2HMKA 4PV1D 2YIUC 1Q90C 1EZVE 3FOUA 4HM2A 4QUPA 2FYNC 5AEUA 2QPZA 4QCKA 2E74D 4H0LD 3VCPA 2XSHA 4HM7A 3CXHE 4QDCA 3L72E 1PPJE 2Q3WA 2BMRA 2HMOA 1SQBE 3L74E 3VCAA 4HM6A 2B24A 2DE7D 1KB9E 3GL2A 3C0DA 4NBHD 2HMLA 3N0QA 1PP9E 2QJPC 1O7MA 3L73E 2A06E 2XRXA 3L71E 1ZRTE 2XR8A 3EQQA 2NVGA 3VMID 3H1LE 2YFJA 1EG9A 4HM3A 2DE6D 1P84E 4HKVA 4NB8D 2IBZE 2NWFA 3GCEA 5CXMA 2BMOA 2E4QA 3TGUE 2D2CD 2NVFA 3GZXA 2YVJB 1SQXE 2BMQA 2E76D 4H13D 4HM8A 4HM5A 2NVEA 4QDFA 2GBXA 5KLVE 1JM1A 1NU1E 2HMMA 4QUQA 1VF5D 5KLIC 3GL0A 1L0LE 4H44D 1NTZE 4P1BH 5KKZC 1RIEA 2I7FA 1G8KB 2JZAA 2YFIA 2NUKA 4NBAD 4NBDD 4EMJB 3D89A 1FQTA 1SQVE 3VMGD 1ULIA 2QJKC 3L70E 3H1JE 2B1XA 3L75E 3BCCE 5HL4A 2DE5D 4NBCD 4QDFB 2HMJA 5BOKA 1G8JB 1RFSA 1VCKA 3H1KE 2ZT9D 4HM0A 1BCCE 2E75D 3CWBE 3AZCA 1O7WA 3GKEA 1UUWA 2GBWA 3EN1A 4NBFD 4HM4A 2XSOA 3GOBA 1UUVA 4NB9D
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 1SQP E;  4PD4 E;  3H1H E;  4QDD A;  4AAY B;  1O7G A;  1KYO E;  1O7P A;  2FYU E;  5AEW A;  1L0N E;  1NYK A;  1VM9 A;  2NUM A;  4NBE D;  4NBG D;  3H1I E;  3DQY A;  4HJL A;  1SQQ E;  3GB4 A;  4HM1 A;  2ZYL A;  1SJG A;  1O7N A;  1BE3 E;  4OGQ D;  1NDO A;  2YFL A;  1WQL A;  1NTM E;  3GTS A;  4AIV A;  4NBB D;  2JO6 A;  3GZY A;  2QJY C;  3CX5 E;  1ULJ A;  2CKF A;  2BCC E;  2E4P A;  4P1C H;  3GTE A;  1NTK E;  3VMH D;  2HMN A;  4U3F E;  1O7H A;  4QUR A;  2HMK A;  4PV1 D;  2YIU C;  1Q90 C;  1EZV E;  3FOU A;  4HM2 A;  4QUP A;  2FYN C;  5AEU A;  2QPZ A;  4QCK A;  2E74 D;  4H0L D;  3VCP A;  2XSH A;  4HM7 A;  3CXH E;  4QDC A;  3L72 E;  1PPJ E;  2Q3W A;  2BMR A;  2HMO A;  1SQB E;  3L74 E;  3VCA A;  4HM6 A;  2B24 A;  2DE7 D;  1KB9 E;  3GL2 A;  3C0D A;  4NBH D;  2HML A;  3N0Q A;  1PP9 E;  2QJP C;  1O7M A;  3L73 E;  2A06 E;  2XRX A;  3L71 E;  1ZRT E;  2XR8 A;  3EQQ A;  2NVG A;  3VMI D;  3H1L E;  2YFJ A;  1EG9 A;  4HM3 A;  2DE6 D;  1P84 E;  4HKV A;  4NB8 D;  2IBZ E;  2NWF A;  3GCE A;  5CXM A;  2BMO A;  2E4Q A;  3TGU E;  2D2C D;  2NVF A;  3GZX A;  2YVJ B;  1SQX E;  2BMQ A;  2E76 D;  4H13 D;  4HM8 A;  4HM5 A;  2NVE A;  4QDF A;  2GBX A;  5KLV E;  1JM1 A;  1NU1 E;  2HMM A;  4QUQ A;  1VF5 D;  5KLI C;  3GL0 A;  1L0L E;  4H44 D;  1NTZ E;  4P1B H;  5KKZ C;  1RIE A;  2I7F A;  1G8K B;  2JZA A;  2YFI A;  2NUK A;  4NBA D;  4NBD D;  4EMJ B;  3D89 A;  1FQT A;  1SQV E;  3VMG D;  1ULI A;  2QJK C;  3L70 E;  3H1J E;  2B1X A;  3L75 E;  3BCC E;  5HL4 A;  2DE5 D;  4NBC D;  4QDF B;  2HMJ A;  5BOK A;  1G8J B;  1RFS A;  1VCK A;  3H1K E;  2ZT9 D;  4HM0 A;  1BCC E;  2E75 D;  3CWB E;  3AZC A;  1O7W A;  3GKE A;  1UUW A;  2GBW A;  3EN1 A;  4NBF D;  4HM4 A;  2XSO A;  3GOB A;  1UUV A;  4NB9 D; 
#chains in the Genus database with same CATH topology
 1SQP E;  4PD4 E;  3H1H E;  4QDD A;  4AAY B;  1O7G A;  1KYO E;  1O7P A;  2FYU E;  5AEW A;  1L0N E;  1NYK A;  1VM9 A;  2NUM A;  4NBE D;  4NBG D;  3H1I E;  3DQY A;  4HJL A;  1SQQ E;  3GB4 A;  4HM1 A;  2ZYL A;  1SJG A;  1O7N A;  1BE3 E;  4OGQ D;  1NDO A;  2YFL A;  1WQL A;  1NTM E;  3GTS A;  4AIV A;  4NBB D;  2JO6 A;  3GZY A;  2QJY C;  3CX5 E;  1ULJ A;  2CKF A;  2BCC E;  2E4P A;  4P1C H;  3GTE A;  1NTK E;  3VMH D;  2HMN A;  4U3F E;  1O7H A;  4QUR A;  2HMK A;  4PV1 D;  2YIU C;  1Q90 C;  1EZV E;  3FOU A;  4HM2 A;  4QUP A;  2FYN C;  5AEU A;  2QPZ A;  4QCK A;  2E74 D;  4H0L D;  3VCP A;  2XSH A;  4HM7 A;  3CXH E;  4QDC A;  3L72 E;  1PPJ E;  2Q3W A;  2BMR A;  2HMO A;  1SQB E;  3L74 E;  3VCA A;  4HM6 A;  2B24 A;  2DE7 D;  1KB9 E;  3GL2 A;  3C0D A;  4NBH D;  2HML A;  3N0Q A;  1PP9 E;  2QJP C;  1O7M A;  3L73 E;  2A06 E;  2XRX A;  3L71 E;  1ZRT E;  2XR8 A;  3EQQ A;  2NVG A;  3VMI D;  3H1L E;  2YFJ A;  1EG9 A;  4HM3 A;  2DE6 D;  1P84 E;  4HKV A;  4NB8 D;  2IBZ E;  2NWF A;  3GCE A;  5CXM A;  2BMO A;  2E4Q A;  3TGU E;  2D2C D;  2NVF A;  3GZX A;  2YVJ B;  1SQX E;  2BMQ A;  2E76 D;  4H13 D;  4HM8 A;  4HM5 A;  2NVE A;  4QDF A;  2GBX A;  5KLV E;  1JM1 A;  1NU1 E;  2HMM A;  4QUQ A;  1VF5 D;  5KLI C;  3GL0 A;  1L0L E;  4H44 D;  1NTZ E;  4P1B H;  5KKZ C;  1RIE A;  2I7F A;  1G8K B;  2JZA A;  2YFI A;  2NUK A;  4NBA D;  4NBD D;  4EMJ B;  3D89 A;  1FQT A;  1SQV E;  3VMG D;  1ULI A;  2QJK C;  3L70 E;  3H1J E;  2B1X A;  3L75 E;  3BCC E;  5HL4 A;  2DE5 D;  4NBC D;  4QDF B;  2HMJ A;  5BOK A;  1G8J B;  1RFS A;  1VCK A;  3H1K E;  2ZT9 D;  4HM0 A;  1BCC E;  2E75 D;  3CWB E;  3AZC A;  1O7W A;  3GKE A;  1UUW A;  2GBW A;  3EN1 A;  4NBF D;  4HM4 A;  2XSO A;  3GOB A;  1UUV A;  4NB9 D; 
#chains in the Genus database with same CATH homology
 1SQP E;  4PD4 E;  3H1H E;  4QDD A;  4AAY B;  1O7G A;  1KYO E;  1O7P A;  2FYU E;  5AEW A;  1L0N E;  1NYK A;  1VM9 A;  2NUM A;  4NBE D;  4NBG D;  3H1I E;  3DQY A;  4HJL A;  1SQQ E;  3GB4 A;  4HM1 A;  2ZYL A;  1SJG A;  1O7N A;  1BE3 E;  4OGQ D;  1NDO A;  2YFL A;  1WQL A;  1NTM E;  3GTS A;  4AIV A;  4NBB D;  2JO6 A;  3GZY A;  2QJY C;  3CX5 E;  1ULJ A;  2CKF A;  2BCC E;  2E4P A;  4P1C H;  3GTE A;  1NTK E;  3VMH D;  2HMN A;  4U3F E;  1O7H A;  4QUR A;  2HMK A;  4PV1 D;  2YIU C;  1Q90 C;  1EZV E;  3FOU A;  4HM2 A;  4QUP A;  2FYN C;  5AEU A;  2QPZ A;  4QCK A;  2E74 D;  4H0L D;  3VCP A;  2XSH A;  4HM7 A;  3CXH E;  4QDC A;  3L72 E;  1PPJ E;  2Q3W A;  2BMR A;  2HMO A;  1SQB E;  3L74 E;  3VCA A;  4HM6 A;  2B24 A;  2DE7 D;  1KB9 E;  3GL2 A;  3C0D A;  4NBH D;  2HML A;  3N0Q A;  1PP9 E;  2QJP C;  1O7M A;  3L73 E;  2A06 E;  2XRX A;  3L71 E;  1ZRT E;  2XR8 A;  3EQQ A;  2NVG A;  3VMI D;  3H1L E;  2YFJ A;  1EG9 A;  4HM3 A;  2DE6 D;  1P84 E;  4HKV A;  4NB8 D;  2IBZ E;  2NWF A;  3GCE A;  5CXM A;  2BMO A;  2E4Q A;  3TGU E;  2D2C D;  2NVF A;  3GZX A;  2YVJ B;  1SQX E;  2BMQ A;  2E76 D;  4H13 D;  4HM8 A;  4HM5 A;  2NVE A;  4QDF A;  2GBX A;  5KLV E;  1JM1 A;  1NU1 E;  2HMM A;  4QUQ A;  1VF5 D;  5KLI C;  3GL0 A;  1L0L E;  4H44 D;  1NTZ E;  4P1B H;  5KKZ C;  1RIE A;  2I7F A;  1G8K B;  2JZA A;  2YFI A;  2NUK A;  4NBA D;  4NBD D;  4EMJ B;  3D89 A;  1FQT A;  1SQV E;  3VMG D;  1ULI A;  2QJK C;  3L70 E;  3H1J E;  2B1X A;  3L75 E;  3BCC E;  5HL4 A;  2DE5 D;  4NBC D;  4QDF B;  2HMJ A;  5BOK A;  1G8J B;  1RFS A;  1VCK A;  3H1K E;  2ZT9 D;  4HM0 A;  1BCC E;  2E75 D;  3CWB E;  3AZC A;  1O7W A;  3GKE A;  1UUW A;  2GBW A;  3EN1 A;  4NBF D;  4HM4 A;  2XSO A;  3GOB A;  1UUV A;  4NB9 D;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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4AIVA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations