4HM4A

Naphthalene 1,2-dioxygenase bound to indan
Total Genus 163
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
163
sequence length
446
structure length
446
Chain Sequence
MNYNNKILVSESGLSQKHLIHGDEELFQHELKTIFARNWLFLTHDSLIPAPGDYVTAKMGIDEVIVSRQNDGSIRAFLNVCRHRGKTLVSVEAGNAKGFVCSYHGWGFGSNGELQSVPFEKDLYGESLNKKCLGLKEVARVESFHGFIYGCFDQEAPPLMDYLGDAAWYLEPMFKHSGGLELVGPPGKVVIKANWKAPAENFVGDAYHVGWTHASSLRSGESIFSSLAGNAALPPEGAGLQMTSKYGSGMGVLWDGYSGVHSADLVPELMAFGGAKQERLNKEIGDVRARIYRSHLNCTVFPNNSMLTCSGVFKVWNPIDANTTEVWTYAIVEKDMPEDLKRRLADSVQRTFGPAGFWESDDNDNMETASQNGKKYQSRDSDLLSNLGFGEDVYGDAVYPGVVGKSAIGETSYRGFYRAYQAHVSSSNWAEFEHASSTWHTELTKT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Naphthalene 1,2-Dioxygenase bound to indan
rcsb
source organism Pseudomonas sp. c18
molecule tags Oxidoreductase/oxidoreductase inhibitor
molecule keywords Naphthalene 1,2-dioxygenase subunit alpha
total genus 163
structure length 446
sequence length 446
ec nomenclature ec 1.14.12.12: Naphthalene 1,2-dioxygenase.
pdb deposition date 2012-10-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00355 Rieske Rieske [2Fe-2S] domain
A PF00848 Ring_hydroxyl_A Ring hydroxylating alpha subunit (catalytic domain)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 4hm4A02
3.90.380.10 Alpha Beta Alpha-Beta Complex Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 4hm4A01
3GCEA 3GL2A 2NUMA 1NYKA 4HM5A 2E74D 1ZRTE 2HMMA 1VCKA 1O7GA 4NB9D 5KLIC 1SQBE 4HKVA 1SQPE 2NVEA 3GOBA 2BMQA 3GCFA 3C0DA 4HM3A 3GKEA 3VMHD 3H1LE 2NUKA 4HM4A 2XR8A 5AEWA 4AIVA 4NBFA 2DE7A 4QDDA 2YFJA 5KKZC 3VMID 2XSHA 1FQTA 5BOKA 3VMGA 4HM2A 1O7NA 1Z01A 1SQQE 4NBAD 4NBBD 2B24A 4NBGA 3VMGD 2ZYLA 4QUPA 1RFSA 5KLVE 2YFIA 2YIUC 3GKQA 1NTZE 1KB9E 2BCCE 3FOUA 2JZAA 4P1BH 1Z03A 3DQYA 3H1JE 3D89A 4HM7A 2E4QA 2DE5A 2JO6A 4NB8A 1PPJE 2HMKA 1BE3E 1KYOE 1NDOA 3GL0A 1Z02A 1P84E 1WW9A 1Q90C 2E76D 2B1XA 1PP9E 3L74E 4OGQD 3GZXA 4QURA 4PV1D 4PD4E 2BMOA 2DE5D 2Q3WA 2FYUE 2XRXA 3GZYA 4AAYB 1G8JB 2QJYC 1EZVE 4NBBA 4NB8D 3L72E 1RIEA 3VCAA 2GBXA 4HM8A 2XSOA 3H1HE 4NBDA 2DE7D 1O7PA 5AEUA 3CX5E 1NTKE 2HMNA 4QUQA 2BMRA 3AZCA 1O7HA 2ZT9D 1VF5D 1UUWA 4HJLA 4NBHD 2NVFA 3EN1A 2DE6A 2HMJA 2QJPC 2QPZA 2IBZE 2E4PA 2NWFA 3N0QA 4NB9A 3H1IE 4U3FE 5CXMA 3L71E 1UUVA 2FYNC 3L73E 1BCCE 4NBGD 4QDFB 4NBAA 2QJKC 3EQQA 3VMIA 3CXHE 3L70E 3GB4A 2I7FA 4NBFD 4HM0A 2YVJB 2YFLA 4H0LD 3L75E 4HM1A 4NBED 4HM6A 4NBCD 2GBWA 3VMHA 5HL4A 4EMJB 2A06E 4H13D 3H1KE 1JM1A 1ULIA 1SQVE 1EG9A 2NVGA 3GTSA 2D2CD 1O7MA 2DE6D 4P1CH 1WQLA 4NBCA 4NBHA 2HMLA 4QCKA 3VCPA 1NTME 4H44D 2CKFA 1NU1E 4NBEA 1L0LE 4QDCA 3CWBE 2E75D 1SJGA 4QDFA 3BCCE 1SQXE 4NBDD 1O7WA 3GTEA 1G8KB 2HMOA 1ULJA 3TGUE 1VM9A 1L0NE
chains in the Genus database with same CATH superfamily
3GCEA 3GL2A 2NUMA 1NYKA 4HM5A 2E74D 1ZRTE 2HMMA 1VCKA 1O7GA 4NB9D 5KLIC 1SQBE 4HKVA 1SQPE 2NVEA 3GOBA 2BMQA 3GCFA 3C0DA 4HM3A 3GKEA 3VMHD 3H1LE 2NUKA 4HM4A 2XR8A 5AEWA 4AIVA 4NBFA 2DE7A 4QDDA 2YFJA 5KKZC 3VMID 2XSHA 1FQTA 5BOKA 3VMGA 4HM2A 1O7NA 1Z01A 1SQQE 4NBAD 4NBBD 2B24A 4NBGA 3VMGD 2ZYLA 4QUPA 1RFSA 5KLVE 2YFIA 2YIUC 3GKQA 1NTZE 1KB9E 2BCCE 3FOUA 2JZAA 4P1BH 1Z03A 3DQYA 3H1JE 3D89A 4HM7A 2E4QA 2DE5A 2JO6A 4NB8A 1PPJE 2HMKA 1BE3E 1KYOE 1NDOA 3GL0A 1Z02A 1P84E 1WW9A 1Q90C 2E76D 2B1XA 1PP9E 3L74E 4OGQD 3GZXA 4QURA 4PV1D 4PD4E 2BMOA 2DE5D 2Q3WA 2FYUE 2XRXA 3GZYA 4AAYB 1G8JB 2QJYC 1EZVE 4NBBA 4NB8D 3L72E 1RIEA 3VCAA 2GBXA 4HM8A 2XSOA 3H1HE 4NBDA 2DE7D 1O7PA 5AEUA 3CX5E 1NTKE 2HMNA 4QUQA 2BMRA 3AZCA 1O7HA 2ZT9D 1VF5D 1UUWA 4HJLA 4NBHD 2NVFA 3EN1A 2DE6A 2HMJA 2QJPC 2QPZA 2IBZE 2E4PA 2NWFA 3N0QA 4NB9A 3H1IE 4U3FE 5CXMA 3L71E 1UUVA 2FYNC 3L73E 1BCCE 4NBGD 4QDFB 4NBAA 2QJKC 3EQQA 3VMIA 3CXHE 3L70E 3GB4A 2I7FA 4NBFD 4HM0A 2YVJB 2YFLA 4H0LD 3L75E 4HM1A 4NBED 4HM6A 4NBCD 2GBWA 3VMHA 5HL4A 4EMJB 2A06E 4H13D 3H1KE 1JM1A 1ULIA 1SQVE 1EG9A 2NVGA 3GTSA 2D2CD 1O7MA 2DE6D 4P1CH 1WQLA 4NBCA 4NBHA 2HMLA 4QCKA 3VCPA 1NTME 4H44D 2CKFA 1NU1E 4NBEA 1L0LE 4QDCA 3CWBE 2E75D 1SJGA 4QDFA 3BCCE 1SQXE 4NBDD 1O7WA 3GTEA 1G8KB 2HMOA 1ULJA 3TGUE 1VM9A 1L0NE
chains in the Genus database with same CATH topology
3GCEA 3GL2A 2NUMA 1NYKA 4HM5A 2E74D 1ZRTE 2HMMA 1VCKA 1O7GA 4NB9D 5KLIC 1SQBE 4HKVA 1SQPE 2NVEA 3GOBA 2BMQA 3GCFA 3C0DA 4HM3A 3GKEA 3VMHD 3H1LE 2NUKA 4HM4A 2XR8A 5AEWA 4AIVA 4NBFA 2DE7A 4QDDA 2YFJA 5KKZC 3VMID 2XSHA 1FQTA 5BOKA 3VMGA 4HM2A 1O7NA 1Z01A 1SQQE 4NBAD 4NBBD 2B24A 4NBGA 3VMGD 2ZYLA 4QUPA 1RFSA 5KLVE 2YFIA 2YIUC 3GKQA 1NTZE 1KB9E 2BCCE 3FOUA 2JZAA 4P1BH 1Z03A 3DQYA 3H1JE 3D89A 4HM7A 2E4QA 2DE5A 2JO6A 4NB8A 1PPJE 2HMKA 1BE3E 1KYOE 1NDOA 3GL0A 1Z02A 1P84E 1WW9A 1Q90C 2E76D 2B1XA 1PP9E 3L74E 4OGQD 3GZXA 4QURA 4PV1D 4PD4E 2BMOA 2DE5D 2Q3WA 2FYUE 2XRXA 3GZYA 4AAYB 1G8JB 2QJYC 1EZVE 4NBBA 4NB8D 3L72E 1RIEA 3VCAA 2GBXA 4HM8A 2XSOA 3H1HE 4NBDA 2DE7D 1O7PA 5AEUA 3CX5E 1NTKE 2HMNA 4QUQA 2BMRA 3AZCA 1O7HA 2ZT9D 1VF5D 1UUWA 4HJLA 4NBHD 2NVFA 3EN1A 2DE6A 2HMJA 2QJPC 2QPZA 2IBZE 2E4PA 2NWFA 3N0QA 4NB9A 3H1IE 4U3FE 5CXMA 3L71E 1UUVA 2FYNC 3L73E 1BCCE 4NBGD 4QDFB 4NBAA 2QJKC 3EQQA 3VMIA 3CXHE 3L70E 3GB4A 2I7FA 4NBFD 4HM0A 2YVJB 2YFLA 4H0LD 3L75E 4HM1A 4NBED 4HM6A 4NBCD 2GBWA 3VMHA 5HL4A 4EMJB 2A06E 4H13D 3H1KE 1JM1A 1ULIA 1SQVE 1EG9A 2NVGA 3GTSA 2D2CD 1O7MA 2DE6D 4P1CH 1WQLA 4NBCA 4NBHA 2HMLA 4QCKA 3VCPA 1NTME 4H44D 2CKFA 1NU1E 4NBEA 1L0LE 4QDCA 3CWBE 2E75D 1SJGA 4QDFA 3BCCE 1SQXE 4NBDD 1O7WA 3GTEA 1G8KB 2HMOA 1ULJA 3TGUE 1VM9A 1L0NE
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3GCE A;  3GL2 A;  2NUM A;  1NYK A;  4HM5 A;  2E74 D;  1ZRT E;  2HMM A;  1VCK A;  1O7G A;  4NB9 D;  5KLI C;  1SQB E;  4HKV A;  1SQP E;  2NVE A;  3GOB A;  2BMQ A;  3GCF A;  3C0D A;  4HM3 A;  3GKE A;  3VMH D;  3H1L E;  2NUK A;  4HM4 A;  2XR8 A;  5AEW A;  4AIV A;  4NBF A;  2DE7 A;  4QDD A;  2YFJ A;  5KKZ C;  3VMI D;  2XSH A;  1FQT A;  5BOK A;  3VMG A;  4HM2 A;  1O7N A;  1Z01 A;  1SQQ E;  4NBA D;  4NBB D;  2B24 A;  4NBG A;  3VMG D;  2ZYL A;  4QUP A;  1RFS A;  5KLV E;  2YFI A;  2YIU C;  3GKQ A;  1NTZ E;  1KB9 E;  2BCC E;  3FOU A;  2JZA A;  4P1B H;  1Z03 A;  3DQY A;  3H1J E;  3D89 A;  4HM7 A;  2E4Q A;  2DE5 A;  2JO6 A;  4NB8 A;  1PPJ E;  2HMK A;  1BE3 E;  1KYO E;  1NDO A;  3GL0 A;  1Z02 A;  1P84 E;  1WW9 A;  1Q90 C;  2E76 D;  2B1X A;  1PP9 E;  3L74 E;  4OGQ D;  3GZX A;  4QUR A;  4PV1 D;  4PD4 E;  2BMO A;  2DE5 D;  2Q3W A;  2FYU E;  2XRX A;  3GZY A;  4AAY B;  1G8J B;  2QJY C;  1EZV E;  4NBB A;  4NB8 D;  3L72 E;  1RIE A;  3VCA A;  2GBX A;  4HM8 A;  2XSO A;  3H1H E;  4NBD A;  2DE7 D;  1O7P A;  5AEU A;  3CX5 E;  1NTK E;  2HMN A;  4QUQ A;  2BMR A;  3AZC A;  1O7H A;  2ZT9 D;  1VF5 D;  1UUW A;  4HJL A;  4NBH D;  2NVF A;  3EN1 A;  2DE6 A;  2HMJ A;  2QJP C;  2QPZ A;  2IBZ E;  2E4P A;  2NWF A;  3N0Q A;  4NB9 A;  3H1I E;  4U3F E;  5CXM A;  3L71 E;  1UUV A;  2FYN C;  3L73 E;  1BCC E;  4NBG D;  4QDF B;  4NBA A;  2QJK C;  3EQQ A;  3VMI A;  3CXH E;  3L70 E;  3GB4 A;  2I7F A;  4NBF D;  4HM0 A;  2YVJ B;  2YFL A;  4H0L D;  3L75 E;  4HM1 A;  4NBE D;  4HM6 A;  4NBC D;  2GBW A;  3VMH A;  5HL4 A;  4EMJ B;  2A06 E;  4H13 D;  3H1K E;  1JM1 A;  1ULI A;  1SQV E;  1EG9 A;  2NVG A;  3GTS A;  2D2C D;  1O7M A;  2DE6 D;  4P1C H;  1WQL A;  4NBC A;  4NBH A;  2HML A;  4QCK A;  3VCP A;  1NTM E;  4H44 D;  2CKF A;  1NU1 E;  4NBE A;  1L0L E;  4QDC A;  3CWB E;  2E75 D;  1SJG A;  4QDF A;  3BCC E;  1SQX E;  4NBD D;  1O7W A;  3GTE A;  1G8K B;  2HMO A;  1ULJ A;  3TGU E;  1VM9 A;  1L0N E; 
#chains in the Genus database with same CATH topology
 3GCE A;  3GL2 A;  2NUM A;  1NYK A;  4HM5 A;  2E74 D;  1ZRT E;  2HMM A;  1VCK A;  1O7G A;  4NB9 D;  5KLI C;  1SQB E;  4HKV A;  1SQP E;  2NVE A;  3GOB A;  2BMQ A;  3GCF A;  3C0D A;  4HM3 A;  3GKE A;  3VMH D;  3H1L E;  2NUK A;  4HM4 A;  2XR8 A;  5AEW A;  4AIV A;  4NBF A;  2DE7 A;  4QDD A;  2YFJ A;  5KKZ C;  3VMI D;  2XSH A;  1FQT A;  5BOK A;  3VMG A;  4HM2 A;  1O7N A;  1Z01 A;  1SQQ E;  4NBA D;  4NBB D;  2B24 A;  4NBG A;  3VMG D;  2ZYL A;  4QUP A;  1RFS A;  5KLV E;  2YFI A;  2YIU C;  3GKQ A;  1NTZ E;  1KB9 E;  2BCC E;  3FOU A;  2JZA A;  4P1B H;  1Z03 A;  3DQY A;  3H1J E;  3D89 A;  4HM7 A;  2E4Q A;  2DE5 A;  2JO6 A;  4NB8 A;  1PPJ E;  2HMK A;  1BE3 E;  1KYO E;  1NDO A;  3GL0 A;  1Z02 A;  1P84 E;  1WW9 A;  1Q90 C;  2E76 D;  2B1X A;  1PP9 E;  3L74 E;  4OGQ D;  3GZX A;  4QUR A;  4PV1 D;  4PD4 E;  2BMO A;  2DE5 D;  2Q3W A;  2FYU E;  2XRX A;  3GZY A;  4AAY B;  1G8J B;  2QJY C;  1EZV E;  4NBB A;  4NB8 D;  3L72 E;  1RIE A;  3VCA A;  2GBX A;  4HM8 A;  2XSO A;  3H1H E;  4NBD A;  2DE7 D;  1O7P A;  5AEU A;  3CX5 E;  1NTK E;  2HMN A;  4QUQ A;  2BMR A;  3AZC A;  1O7H A;  2ZT9 D;  1VF5 D;  1UUW A;  4HJL A;  4NBH D;  2NVF A;  3EN1 A;  2DE6 A;  2HMJ A;  2QJP C;  2QPZ A;  2IBZ E;  2E4P A;  2NWF A;  3N0Q A;  4NB9 A;  3H1I E;  4U3F E;  5CXM A;  3L71 E;  1UUV A;  2FYN C;  3L73 E;  1BCC E;  4NBG D;  4QDF B;  4NBA A;  2QJK C;  3EQQ A;  3VMI A;  3CXH E;  3L70 E;  3GB4 A;  2I7F A;  4NBF D;  4HM0 A;  2YVJ B;  2YFL A;  4H0L D;  3L75 E;  4HM1 A;  4NBE D;  4HM6 A;  4NBC D;  2GBW A;  3VMH A;  5HL4 A;  4EMJ B;  2A06 E;  4H13 D;  3H1K E;  1JM1 A;  1ULI A;  1SQV E;  1EG9 A;  2NVG A;  3GTS A;  2D2C D;  1O7M A;  2DE6 D;  4P1C H;  1WQL A;  4NBC A;  4NBH A;  2HML A;  4QCK A;  3VCP A;  1NTM E;  4H44 D;  2CKF A;  1NU1 E;  4NBE A;  1L0L E;  4QDC A;  3CWB E;  2E75 D;  1SJG A;  4QDF A;  3BCC E;  1SQX E;  4NBD D;  1O7W A;  3GTE A;  1G8K B;  2HMO A;  1ULJ A;  3TGU E;  1VM9 A;  1L0N E; 
#chains in the Genus database with same CATH homology
 3GCE A;  3GL2 A;  2NUM A;  1NYK A;  4HM5 A;  2E74 D;  1ZRT E;  2HMM A;  1VCK A;  1O7G A;  4NB9 D;  5KLI C;  1SQB E;  4HKV A;  1SQP E;  2NVE A;  3GOB A;  2BMQ A;  3GCF A;  3C0D A;  4HM3 A;  3GKE A;  3VMH D;  3H1L E;  2NUK A;  4HM4 A;  2XR8 A;  5AEW A;  4AIV A;  4NBF A;  2DE7 A;  4QDD A;  2YFJ A;  5KKZ C;  3VMI D;  2XSH A;  1FQT A;  5BOK A;  3VMG A;  4HM2 A;  1O7N A;  1Z01 A;  1SQQ E;  4NBA D;  4NBB D;  2B24 A;  4NBG A;  3VMG D;  2ZYL A;  4QUP A;  1RFS A;  5KLV E;  2YFI A;  2YIU C;  3GKQ A;  1NTZ E;  1KB9 E;  2BCC E;  3FOU A;  2JZA A;  4P1B H;  1Z03 A;  3DQY A;  3H1J E;  3D89 A;  4HM7 A;  2E4Q A;  2DE5 A;  2JO6 A;  4NB8 A;  1PPJ E;  2HMK A;  1BE3 E;  1KYO E;  1NDO A;  3GL0 A;  1Z02 A;  1P84 E;  1WW9 A;  1Q90 C;  2E76 D;  2B1X A;  1PP9 E;  3L74 E;  4OGQ D;  3GZX A;  4QUR A;  4PV1 D;  4PD4 E;  2BMO A;  2DE5 D;  2Q3W A;  2FYU E;  2XRX A;  3GZY A;  4AAY B;  1G8J B;  2QJY C;  1EZV E;  4NBB A;  4NB8 D;  3L72 E;  1RIE A;  3VCA A;  2GBX A;  4HM8 A;  2XSO A;  3H1H E;  4NBD A;  2DE7 D;  1O7P A;  5AEU A;  3CX5 E;  1NTK E;  2HMN A;  4QUQ A;  2BMR A;  3AZC A;  1O7H A;  2ZT9 D;  1VF5 D;  1UUW A;  4HJL A;  4NBH D;  2NVF A;  3EN1 A;  2DE6 A;  2HMJ A;  2QJP C;  2QPZ A;  2IBZ E;  2E4P A;  2NWF A;  3N0Q A;  4NB9 A;  3H1I E;  4U3F E;  5CXM A;  3L71 E;  1UUV A;  2FYN C;  3L73 E;  1BCC E;  4NBG D;  4QDF B;  4NBA A;  2QJK C;  3EQQ A;  3VMI A;  3CXH E;  3L70 E;  3GB4 A;  2I7F A;  4NBF D;  4HM0 A;  2YVJ B;  2YFL A;  4H0L D;  3L75 E;  4HM1 A;  4NBE D;  4HM6 A;  4NBC D;  2GBW A;  3VMH A;  5HL4 A;  4EMJ B;  2A06 E;  4H13 D;  3H1K E;  1JM1 A;  1ULI A;  1SQV E;  1EG9 A;  2NVG A;  3GTS A;  2D2C D;  1O7M A;  2DE6 D;  4P1C H;  1WQL A;  4NBC A;  4NBH A;  2HML A;  4QCK A;  3VCP A;  1NTM E;  4H44 D;  2CKF A;  1NU1 E;  4NBE A;  1L0L E;  4QDC A;  3CWB E;  2E75 D;  1SJG A;  4QDF A;  3BCC E;  1SQX E;  4NBD D;  1O7W A;  3GTE A;  1G8K B;  2HMO A;  1ULJ A;  3TGU E;  1VM9 A;  1L0N E; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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