4HM6A

Naphthalene 1,2-dioxygenase bound to phenetole
Total Genus 161
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
161
sequence length
446
structure length
446
Chain Sequence
MNYNNKILVSESGLSQKHLIHGDEELFQHELKTIFARNWLFLTHDSLIPAPGDYVTAKMGIDEVIVSRQNDGSIRAFLNVCRHRGKTLVSVEAGNAKGFVCSYHGWGFGSNGELQSVPFEKDLYGESLNKKCLGLKEVARVESFHGFIYGCFDQEAPPLMDYLGDAAWYLEPMFKHSGGLELVGPPGKVVIKANWKAPAENFVGDAYHVGWTHASSLRSGESIFSSLAGNAALPPEGAGLQMTSKYGSGMGVLWDGYSGVHSADLVPELMAFGGAKQERLNKEIGDVRARIYRSHLNCTVFPNNSMLTCSGVFKVWNPIDANTTEVWTYAIVEKDMPEDLKRRLADSVQRTFGPAGFWESDDNDNMETASQNGKKYQSRDSDLLSNLGFGEDVYGDAVYPGVVGKSAIGETSYRGFYRAYQAHVSSSNWAEFEHASSTWHTELTKT
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Naphthalene 1,2-Dioxygenase bound to phenetole
rcsb
source organism Pseudomonas sp. c18
molecule tags Oxidoreductase/oxidoreductase inhibitor
molecule keywords Naphthalene 1,2-dioxygenase subunit alpha
total genus 161
structure length 446
sequence length 446
ec nomenclature ec 1.14.12.12: Naphthalene 1,2-dioxygenase.
pdb deposition date 2012-10-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00355 Rieske Rieske [2Fe-2S] domain
A PF00848 Ring_hydroxyl_A Ring hydroxylating alpha subunit (catalytic domain)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 4hm6A02
3.90.380.10 Alpha Beta Alpha-Beta Complex Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 4hm6A01
2E4QA 3TGUE 1VF5D 4HM0A 3VCPA 2YFJA 2DE7A 4NBDA 2YFLA 2XSOA 1NU1E 3GKQA 1UUWA 3VMGD 4HM7A 2GBWA 2E4PA 3GZYA 4NB9A 1L0NE 1RIEA 1ULIA 3GKEA 3L70E 4NB8D 1O7GA 1NYKA 3H1HE 4HKVA 4QDFA 2XR8A 3L72E 1NTME 4NBFD 4HJLA 3D89A 2BMRA 2HMJA 3GTEA 2NVFA 2A06E 2Q3WA 2D2CD 1UUVA 3L75E 4H44D 1RFSA 1O7MA 2IBZE 1Z01A 2BMQA 2DE5D 1SJGA 2BCCE 3VCAA 3VMHD 2QPZA 2DE5A 5KLIC 3VMIA 3H1LE 4HM1A 4NBDD 2FYNC 1KYOE 4NBGD 3L73E 1P84E 2GBXA 4NBBA 2YFIA 3FOUA 4PV1D 3H1IE 4AAYB 3AZCA 1BCCE 1SQBE 1KB9E 4NBBD 5HL4A 4NBFA 4NBGA 2QJYC 3GCEA 1PPJE 2NVEA 3VMID 3GL2A 3VMHA 1JM1A 2DE6A 1O7NA 3H1KE 4P1BH 5AEUA 3DQYA 4HM6A 4QUQA 5KKZC 4NB8A 2JZAA 2NWFA 1EG9A 1EZVE 4HM2A 2FYUE 4HM4A 1WQLA 4H0LD 1Q90C 2NUKA 3CX5E 4QUPA 2CKFA 3N0QA 1FQTA 1G8KB 2ZYLA 1O7HA 2HMOA 3GCFA 1NTKE 2B1XA 4QDFB 3CXHE 4NBAD 1L0LE 1O7WA 1WW9A 4NBCD 5BOKA 2HMMA 4OGQD 2JO6A 3GOBA 3L71E 4H13D 1ULJA 2I7FA 3EQQA 1PP9E 2ZT9D 4AIVA 4HM3A 2QJPC 1G8JB 2DE7D 5KLVE 3GL0A 4NBCA 3H1JE 4NBED 2NUMA 1SQQE 2QJKC 4NBAA 4QURA 1NTZE 1Z03A 4NBHA 2HMLA 2HMKA 2NVGA 3GTSA 1VCKA 2HMNA 1Z02A 4EMJB 2YVJB 1VM9A 2E75D 4PD4E 4HM8A 1SQVE 4U3FE 4NBHD 2XRXA 4QDCA 2E76D 2B24A 2E74D 2XSHA 1SQXE 4QDDA 4NBEA 3CWBE 4NB9D 4P1CH 2BMOA 3VMGA 2YIUC 2DE6D 3GB4A 3BCCE 1BE3E 3GZXA 1O7PA 1ZRTE 3L74E 5AEWA 3EN1A 1SQPE 1NDOA 5CXMA 4HM5A 4QCKA 3C0DA
chains in the Genus database with same CATH superfamily
2E4QA 3TGUE 1VF5D 4HM0A 3VCPA 2YFJA 2DE7A 4NBDA 2YFLA 2XSOA 1NU1E 3GKQA 1UUWA 3VMGD 4HM7A 2GBWA 2E4PA 3GZYA 4NB9A 1L0NE 1RIEA 1ULIA 3GKEA 3L70E 4NB8D 1O7GA 1NYKA 3H1HE 4HKVA 4QDFA 2XR8A 3L72E 1NTME 4NBFD 4HJLA 3D89A 2BMRA 2HMJA 3GTEA 2NVFA 2A06E 2Q3WA 2D2CD 1UUVA 3L75E 4H44D 1RFSA 1O7MA 2IBZE 1Z01A 2BMQA 2DE5D 1SJGA 2BCCE 3VCAA 3VMHD 2QPZA 2DE5A 5KLIC 3VMIA 3H1LE 4HM1A 4NBDD 2FYNC 1KYOE 4NBGD 3L73E 1P84E 2GBXA 4NBBA 2YFIA 3FOUA 4PV1D 3H1IE 4AAYB 3AZCA 1BCCE 1SQBE 1KB9E 4NBBD 5HL4A 4NBFA 4NBGA 2QJYC 3GCEA 1PPJE 2NVEA 3VMID 3GL2A 3VMHA 1JM1A 2DE6A 1O7NA 3H1KE 4P1BH 5AEUA 3DQYA 4HM6A 4QUQA 5KKZC 4NB8A 2JZAA 2NWFA 1EG9A 1EZVE 4HM2A 2FYUE 4HM4A 1WQLA 4H0LD 1Q90C 2NUKA 3CX5E 4QUPA 2CKFA 3N0QA 1FQTA 1G8KB 2ZYLA 1O7HA 2HMOA 3GCFA 1NTKE 2B1XA 4QDFB 3CXHE 4NBAD 1L0LE 1O7WA 1WW9A 4NBCD 5BOKA 2HMMA 4OGQD 2JO6A 3GOBA 3L71E 4H13D 1ULJA 2I7FA 3EQQA 1PP9E 2ZT9D 4AIVA 4HM3A 2QJPC 1G8JB 2DE7D 5KLVE 3GL0A 4NBCA 3H1JE 4NBED 2NUMA 1SQQE 2QJKC 4NBAA 4QURA 1NTZE 1Z03A 4NBHA 2HMLA 2HMKA 2NVGA 3GTSA 1VCKA 2HMNA 1Z02A 4EMJB 2YVJB 1VM9A 2E75D 4PD4E 4HM8A 1SQVE 4U3FE 4NBHD 2XRXA 4QDCA 2E76D 2B24A 2E74D 2XSHA 1SQXE 4QDDA 4NBEA 3CWBE 4NB9D 4P1CH 2BMOA 3VMGA 2YIUC 2DE6D 3GB4A 3BCCE 1BE3E 3GZXA 1O7PA 1ZRTE 3L74E 5AEWA 3EN1A 1SQPE 1NDOA 5CXMA 4HM5A 4QCKA 3C0DA
chains in the Genus database with same CATH topology
2E4QA 3TGUE 1VF5D 4HM0A 3VCPA 2YFJA 2DE7A 4NBDA 2YFLA 2XSOA 1NU1E 3GKQA 1UUWA 3VMGD 4HM7A 2GBWA 2E4PA 3GZYA 4NB9A 1L0NE 1RIEA 1ULIA 3GKEA 3L70E 4NB8D 1O7GA 1NYKA 3H1HE 4HKVA 4QDFA 2XR8A 3L72E 1NTME 4NBFD 4HJLA 3D89A 2BMRA 2HMJA 3GTEA 2NVFA 2A06E 2Q3WA 2D2CD 1UUVA 3L75E 4H44D 1RFSA 1O7MA 2IBZE 1Z01A 2BMQA 2DE5D 1SJGA 2BCCE 3VCAA 3VMHD 2QPZA 2DE5A 5KLIC 3VMIA 3H1LE 4HM1A 4NBDD 2FYNC 1KYOE 4NBGD 3L73E 1P84E 2GBXA 4NBBA 2YFIA 3FOUA 4PV1D 3H1IE 4AAYB 3AZCA 1BCCE 1SQBE 1KB9E 4NBBD 5HL4A 4NBFA 4NBGA 2QJYC 3GCEA 1PPJE 2NVEA 3VMID 3GL2A 3VMHA 1JM1A 2DE6A 1O7NA 3H1KE 4P1BH 5AEUA 3DQYA 4HM6A 4QUQA 5KKZC 4NB8A 2JZAA 2NWFA 1EG9A 1EZVE 4HM2A 2FYUE 4HM4A 1WQLA 4H0LD 1Q90C 2NUKA 3CX5E 4QUPA 2CKFA 3N0QA 1FQTA 1G8KB 2ZYLA 1O7HA 2HMOA 3GCFA 1NTKE 2B1XA 4QDFB 3CXHE 4NBAD 1L0LE 1O7WA 1WW9A 4NBCD 5BOKA 2HMMA 4OGQD 2JO6A 3GOBA 3L71E 4H13D 1ULJA 2I7FA 3EQQA 1PP9E 2ZT9D 4AIVA 4HM3A 2QJPC 1G8JB 2DE7D 5KLVE 3GL0A 4NBCA 3H1JE 4NBED 2NUMA 1SQQE 2QJKC 4NBAA 4QURA 1NTZE 1Z03A 4NBHA 2HMLA 2HMKA 2NVGA 3GTSA 1VCKA 2HMNA 1Z02A 4EMJB 2YVJB 1VM9A 2E75D 4PD4E 4HM8A 1SQVE 4U3FE 4NBHD 2XRXA 4QDCA 2E76D 2B24A 2E74D 2XSHA 1SQXE 4QDDA 4NBEA 3CWBE 4NB9D 4P1CH 2BMOA 3VMGA 2YIUC 2DE6D 3GB4A 3BCCE 1BE3E 3GZXA 1O7PA 1ZRTE 3L74E 5AEWA 3EN1A 1SQPE 1NDOA 5CXMA 4HM5A 4QCKA 3C0DA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2E4Q A;  3TGU E;  1VF5 D;  4HM0 A;  3VCP A;  2YFJ A;  2DE7 A;  4NBD A;  2YFL A;  2XSO A;  1NU1 E;  3GKQ A;  1UUW A;  3VMG D;  4HM7 A;  2GBW A;  2E4P A;  3GZY A;  4NB9 A;  1L0N E;  1RIE A;  1ULI A;  3GKE A;  3L70 E;  4NB8 D;  1O7G A;  1NYK A;  3H1H E;  4HKV A;  4QDF A;  2XR8 A;  3L72 E;  1NTM E;  4NBF D;  4HJL A;  3D89 A;  2BMR A;  2HMJ A;  3GTE A;  2NVF A;  2A06 E;  2Q3W A;  2D2C D;  1UUV A;  3L75 E;  4H44 D;  1RFS A;  1O7M A;  2IBZ E;  1Z01 A;  2BMQ A;  2DE5 D;  1SJG A;  2BCC E;  3VCA A;  3VMH D;  2QPZ A;  2DE5 A;  5KLI C;  3VMI A;  3H1L E;  4HM1 A;  4NBD D;  2FYN C;  1KYO E;  4NBG D;  3L73 E;  1P84 E;  2GBX A;  4NBB A;  2YFI A;  3FOU A;  4PV1 D;  3H1I E;  4AAY B;  3AZC A;  1BCC E;  1SQB E;  1KB9 E;  4NBB D;  5HL4 A;  4NBF A;  4NBG A;  2QJY C;  3GCE A;  1PPJ E;  2NVE A;  3VMI D;  3GL2 A;  3VMH A;  1JM1 A;  2DE6 A;  1O7N A;  3H1K E;  4P1B H;  5AEU A;  3DQY A;  4HM6 A;  4QUQ A;  5KKZ C;  4NB8 A;  2JZA A;  2NWF A;  1EG9 A;  1EZV E;  4HM2 A;  2FYU E;  4HM4 A;  1WQL A;  4H0L D;  1Q90 C;  2NUK A;  3CX5 E;  4QUP A;  2CKF A;  3N0Q A;  1FQT A;  1G8K B;  2ZYL A;  1O7H A;  2HMO A;  3GCF A;  1NTK E;  2B1X A;  4QDF B;  3CXH E;  4NBA D;  1L0L E;  1O7W A;  1WW9 A;  4NBC D;  5BOK A;  2HMM A;  4OGQ D;  2JO6 A;  3GOB A;  3L71 E;  4H13 D;  1ULJ A;  2I7F A;  3EQQ A;  1PP9 E;  2ZT9 D;  4AIV A;  4HM3 A;  2QJP C;  1G8J B;  2DE7 D;  5KLV E;  3GL0 A;  4NBC A;  3H1J E;  4NBE D;  2NUM A;  1SQQ E;  2QJK C;  4NBA A;  4QUR A;  1NTZ E;  1Z03 A;  4NBH A;  2HML A;  2HMK A;  2NVG A;  3GTS A;  1VCK A;  2HMN A;  1Z02 A;  4EMJ B;  2YVJ B;  1VM9 A;  2E75 D;  4PD4 E;  4HM8 A;  1SQV E;  4U3F E;  4NBH D;  2XRX A;  4QDC A;  2E76 D;  2B24 A;  2E74 D;  2XSH A;  1SQX E;  4QDD A;  4NBE A;  3CWB E;  4NB9 D;  4P1C H;  2BMO A;  3VMG A;  2YIU C;  2DE6 D;  3GB4 A;  3BCC E;  1BE3 E;  3GZX A;  1O7P A;  1ZRT E;  3L74 E;  5AEW A;  3EN1 A;  1SQP E;  1NDO A;  5CXM A;  4HM5 A;  4QCK A;  3C0D A; 
#chains in the Genus database with same CATH topology
 2E4Q A;  3TGU E;  1VF5 D;  4HM0 A;  3VCP A;  2YFJ A;  2DE7 A;  4NBD A;  2YFL A;  2XSO A;  1NU1 E;  3GKQ A;  1UUW A;  3VMG D;  4HM7 A;  2GBW A;  2E4P A;  3GZY A;  4NB9 A;  1L0N E;  1RIE A;  1ULI A;  3GKE A;  3L70 E;  4NB8 D;  1O7G A;  1NYK A;  3H1H E;  4HKV A;  4QDF A;  2XR8 A;  3L72 E;  1NTM E;  4NBF D;  4HJL A;  3D89 A;  2BMR A;  2HMJ A;  3GTE A;  2NVF A;  2A06 E;  2Q3W A;  2D2C D;  1UUV A;  3L75 E;  4H44 D;  1RFS A;  1O7M A;  2IBZ E;  1Z01 A;  2BMQ A;  2DE5 D;  1SJG A;  2BCC E;  3VCA A;  3VMH D;  2QPZ A;  2DE5 A;  5KLI C;  3VMI A;  3H1L E;  4HM1 A;  4NBD D;  2FYN C;  1KYO E;  4NBG D;  3L73 E;  1P84 E;  2GBX A;  4NBB A;  2YFI A;  3FOU A;  4PV1 D;  3H1I E;  4AAY B;  3AZC A;  1BCC E;  1SQB E;  1KB9 E;  4NBB D;  5HL4 A;  4NBF A;  4NBG A;  2QJY C;  3GCE A;  1PPJ E;  2NVE A;  3VMI D;  3GL2 A;  3VMH A;  1JM1 A;  2DE6 A;  1O7N A;  3H1K E;  4P1B H;  5AEU A;  3DQY A;  4HM6 A;  4QUQ A;  5KKZ C;  4NB8 A;  2JZA A;  2NWF A;  1EG9 A;  1EZV E;  4HM2 A;  2FYU E;  4HM4 A;  1WQL A;  4H0L D;  1Q90 C;  2NUK A;  3CX5 E;  4QUP A;  2CKF A;  3N0Q A;  1FQT A;  1G8K B;  2ZYL A;  1O7H A;  2HMO A;  3GCF A;  1NTK E;  2B1X A;  4QDF B;  3CXH E;  4NBA D;  1L0L E;  1O7W A;  1WW9 A;  4NBC D;  5BOK A;  2HMM A;  4OGQ D;  2JO6 A;  3GOB A;  3L71 E;  4H13 D;  1ULJ A;  2I7F A;  3EQQ A;  1PP9 E;  2ZT9 D;  4AIV A;  4HM3 A;  2QJP C;  1G8J B;  2DE7 D;  5KLV E;  3GL0 A;  4NBC A;  3H1J E;  4NBE D;  2NUM A;  1SQQ E;  2QJK C;  4NBA A;  4QUR A;  1NTZ E;  1Z03 A;  4NBH A;  2HML A;  2HMK A;  2NVG A;  3GTS A;  1VCK A;  2HMN A;  1Z02 A;  4EMJ B;  2YVJ B;  1VM9 A;  2E75 D;  4PD4 E;  4HM8 A;  1SQV E;  4U3F E;  4NBH D;  2XRX A;  4QDC A;  2E76 D;  2B24 A;  2E74 D;  2XSH A;  1SQX E;  4QDD A;  4NBE A;  3CWB E;  4NB9 D;  4P1C H;  2BMO A;  3VMG A;  2YIU C;  2DE6 D;  3GB4 A;  3BCC E;  1BE3 E;  3GZX A;  1O7P A;  1ZRT E;  3L74 E;  5AEW A;  3EN1 A;  1SQP E;  1NDO A;  5CXM A;  4HM5 A;  4QCK A;  3C0D A; 
#chains in the Genus database with same CATH homology
 2E4Q A;  3TGU E;  1VF5 D;  4HM0 A;  3VCP A;  2YFJ A;  2DE7 A;  4NBD A;  2YFL A;  2XSO A;  1NU1 E;  3GKQ A;  1UUW A;  3VMG D;  4HM7 A;  2GBW A;  2E4P A;  3GZY A;  4NB9 A;  1L0N E;  1RIE A;  1ULI A;  3GKE A;  3L70 E;  4NB8 D;  1O7G A;  1NYK A;  3H1H E;  4HKV A;  4QDF A;  2XR8 A;  3L72 E;  1NTM E;  4NBF D;  4HJL A;  3D89 A;  2BMR A;  2HMJ A;  3GTE A;  2NVF A;  2A06 E;  2Q3W A;  2D2C D;  1UUV A;  3L75 E;  4H44 D;  1RFS A;  1O7M A;  2IBZ E;  1Z01 A;  2BMQ A;  2DE5 D;  1SJG A;  2BCC E;  3VCA A;  3VMH D;  2QPZ A;  2DE5 A;  5KLI C;  3VMI A;  3H1L E;  4HM1 A;  4NBD D;  2FYN C;  1KYO E;  4NBG D;  3L73 E;  1P84 E;  2GBX A;  4NBB A;  2YFI A;  3FOU A;  4PV1 D;  3H1I E;  4AAY B;  3AZC A;  1BCC E;  1SQB E;  1KB9 E;  4NBB D;  5HL4 A;  4NBF A;  4NBG A;  2QJY C;  3GCE A;  1PPJ E;  2NVE A;  3VMI D;  3GL2 A;  3VMH A;  1JM1 A;  2DE6 A;  1O7N A;  3H1K E;  4P1B H;  5AEU A;  3DQY A;  4HM6 A;  4QUQ A;  5KKZ C;  4NB8 A;  2JZA A;  2NWF A;  1EG9 A;  1EZV E;  4HM2 A;  2FYU E;  4HM4 A;  1WQL A;  4H0L D;  1Q90 C;  2NUK A;  3CX5 E;  4QUP A;  2CKF A;  3N0Q A;  1FQT A;  1G8K B;  2ZYL A;  1O7H A;  2HMO A;  3GCF A;  1NTK E;  2B1X A;  4QDF B;  3CXH E;  4NBA D;  1L0L E;  1O7W A;  1WW9 A;  4NBC D;  5BOK A;  2HMM A;  4OGQ D;  2JO6 A;  3GOB A;  3L71 E;  4H13 D;  1ULJ A;  2I7F A;  3EQQ A;  1PP9 E;  2ZT9 D;  4AIV A;  4HM3 A;  2QJP C;  1G8J B;  2DE7 D;  5KLV E;  3GL0 A;  4NBC A;  3H1J E;  4NBE D;  2NUM A;  1SQQ E;  2QJK C;  4NBA A;  4QUR A;  1NTZ E;  1Z03 A;  4NBH A;  2HML A;  2HMK A;  2NVG A;  3GTS A;  1VCK A;  2HMN A;  1Z02 A;  4EMJ B;  2YVJ B;  1VM9 A;  2E75 D;  4PD4 E;  4HM8 A;  1SQV E;  4U3F E;  4NBH D;  2XRX A;  4QDC A;  2E76 D;  2B24 A;  2E74 D;  2XSH A;  1SQX E;  4QDD A;  4NBE A;  3CWB E;  4NB9 D;  4P1C H;  2BMO A;  3VMG A;  2YIU C;  2DE6 D;  3GB4 A;  3BCC E;  1BE3 E;  3GZX A;  1O7P A;  1ZRT E;  3L74 E;  5AEW A;  3EN1 A;  1SQP E;  1NDO A;  5CXM A;  4HM5 A;  4QCK A;  3C0D A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...