4HM7A

Naphthalene 1,2-dioxygenase bound to styrene
Total Genus 161
50100150200250300350400020406080100120140160
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
161
sequence length
446
structure length
446
Chain Sequence
MNYNNKILVSESGLSQKHLIHGDEELFQHELKTIFARNWLFLTHDSLIPAPGDYVTAKMGIDEVIVSRQNDGSIRAFLNVCRHRGKTLVSVEAGNAKGFVCSYHGWGFGSNGELQSVPFEKDLYGESLNKKCLGLKEVARVESFHGFIYGCFDQEAPPLMDYLGDAAWYLEPMFKHSGGLELVGPPGKVVIKANWKAPAENFVGDAYHVGWTHASSLRSGESIFSSLAGNAALPPEGAGLQMTSKYGSGMGVLWDGYSGVHSADLVPELMAFGGAKQERLNKEIGDVRARIYRSHLNCTVFPNNSMLTCSGVFKVWNPIDANTTEVWTYAIVEKDMPEDLKRRLADSVQRTFGPAGFWESDDNDNMETASQNGKKYQSRDSDLLSNLGFGEDVYGDAVYPGVVGKSAIGETSYRGFYRAYQAHVSSSNWAEFEHASSTWHTELTKT
50100150200250300350400400300200100
050100150Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Oxidoreductase/oxidoreductase inhibitor
source organism Pseudomonas sp. c18
publication title Naphthalene 1,2-Dioxygenase bound to styrene
rcsb
molecule keywords Naphthalene 1,2-dioxygenase subunit alpha
total genus 161
structure length 446
sequence length 446
ec nomenclature ec 1.14.12.12: Naphthalene 1,2-dioxygenase.
pdb deposition date 2012-10-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00355 Rieske Rieske [2Fe-2S] domain
A PF00848 Ring_hydroxyl_A Ring hydroxylating alpha subunit (catalytic domain)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 4hm7A02
3.90.380.10 Alpha Beta Alpha-Beta Complex Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 4hm7A01
2HMOA 4HM5A 4PD4E 1VCKA 2FYUE 2BMOA 4HM7A 4P1CH 1O7WA 1UUWA 3VMID 4NBFA 1NTME 1ZRTE 1EG9A 5KLIC 4QCKA 1SQXE 2NWFA 1NTZE 1NTKE 4NB9D 5AEWA 4QUPA 4NBCD 2JO6A 1SQVE 3L73E 1SQPE 4NBEA 2YFIA 1G8KB 1L0LE 1WW9A 3VMIA 2ZT9D 2Q3WA 4HKVA 1JM1A 4HM2A 3VMHA 3GCEA 1PP9E 2HMKA 4NBGA 4QDFB 4U3FE 2NUMA 1NYKA 3BCCE 4HJLA 2A06E 3DQYA 4NBCA 3GTSA 2XRXA 2E75D 1VF5D 1RIEA 2E4PA 2NVFA 2HMNA 3VMGD 2YFJA 1O7GA 2B24A 1NU1E 3L74E 2D2CD 3H1JE 3EQQA 2DE7D 3GKEA 2XR8A 3AZCA 1G8JB 3GCFA 1WQLA 4NBDD 3VMGA 4H44D 2BCCE 1ULJA 4HM1A 4P1BH 1UUVA 4PV1D 1L0NE 3CWBE 1Q90C 3D89A 1FQTA 3L72E 4H0LD 2DE7A 2HMJA 4NB9A 2GBXA 3L71E 4HM4A 4AAYB 1O7HA 4HM8A 5KLVE 3VCPA 4NBHD 1PPJE 3GB4A 4NBDA 4QDDA 2E76D 1P84E 2XSOA 2QJKC 3CXHE 4H13D 1Z03A 2HMMA 4QURA 2QJYC 2XSHA 4HM6A 4NBAD 1BE3E 4QDCA 3L70E 3GKQA 3H1IE 3L75E 4QUQA 2HMLA 1SQBE 2NVEA 4NBHA 1O7MA 5HL4A 2YFLA 4QDFA 3VCAA 1Z02A 2DE6D 3GL2A 4NBBD 1NDOA 1RFSA 2YVJB 3GZYA 4NBAA 4HM3A 3GTEA 4EMJB 4AIVA 4HM0A 1O7PA 2BMQA 2E4QA 2DE6A 4NBBA 2NVGA 2ZYLA 4OGQD 4NBED 2YIUC 3FOUA 1BCCE 2GBWA 3GOBA 3CX5E 3VMHD 2CKFA 5CXMA 1SQQE 4NBGD 3TGUE 2DE5D 3H1LE 2QJPC 5BOKA 1Z01A 2B1XA 2FYNC 3GL0A 1KB9E 1SJGA 1EZVE 3H1HE 2NUKA 4NB8D 1ULIA 2QPZA 5KKZC 2IBZE 2I7FA 2DE5A 3H1KE 5AEUA 3N0QA 1VM9A 4NBFD 4NB8A 1O7NA 2JZAA 3C0DA 3EN1A 3GZXA 1KYOE 2BMRA 2E74D
chains in the Genus database with same CATH superfamily
2HMOA 4HM5A 4PD4E 1VCKA 2FYUE 2BMOA 4HM7A 4P1CH 1O7WA 1UUWA 3VMID 4NBFA 1NTME 1ZRTE 1EG9A 5KLIC 4QCKA 1SQXE 2NWFA 1NTZE 1NTKE 4NB9D 5AEWA 4QUPA 4NBCD 2JO6A 1SQVE 3L73E 1SQPE 4NBEA 2YFIA 1G8KB 1L0LE 1WW9A 3VMIA 2ZT9D 2Q3WA 4HKVA 1JM1A 4HM2A 3VMHA 3GCEA 1PP9E 2HMKA 4NBGA 4QDFB 4U3FE 2NUMA 1NYKA 3BCCE 4HJLA 2A06E 3DQYA 4NBCA 3GTSA 2XRXA 2E75D 1VF5D 1RIEA 2E4PA 2NVFA 2HMNA 3VMGD 2YFJA 1O7GA 2B24A 1NU1E 3L74E 2D2CD 3H1JE 3EQQA 2DE7D 3GKEA 2XR8A 3AZCA 1G8JB 3GCFA 1WQLA 4NBDD 3VMGA 4H44D 2BCCE 1ULJA 4HM1A 4P1BH 1UUVA 4PV1D 1L0NE 3CWBE 1Q90C 3D89A 1FQTA 3L72E 4H0LD 2DE7A 2HMJA 4NB9A 2GBXA 3L71E 4HM4A 4AAYB 1O7HA 4HM8A 5KLVE 3VCPA 4NBHD 1PPJE 3GB4A 4NBDA 4QDDA 2E76D 1P84E 2XSOA 2QJKC 3CXHE 4H13D 1Z03A 2HMMA 4QURA 2QJYC 2XSHA 4HM6A 4NBAD 1BE3E 4QDCA 3L70E 3GKQA 3H1IE 3L75E 4QUQA 2HMLA 1SQBE 2NVEA 4NBHA 1O7MA 5HL4A 2YFLA 4QDFA 3VCAA 1Z02A 2DE6D 3GL2A 4NBBD 1NDOA 1RFSA 2YVJB 3GZYA 4NBAA 4HM3A 3GTEA 4EMJB 4AIVA 4HM0A 1O7PA 2BMQA 2E4QA 2DE6A 4NBBA 2NVGA 2ZYLA 4OGQD 4NBED 2YIUC 3FOUA 1BCCE 2GBWA 3GOBA 3CX5E 3VMHD 2CKFA 5CXMA 1SQQE 4NBGD 3TGUE 2DE5D 3H1LE 2QJPC 5BOKA 1Z01A 2B1XA 2FYNC 3GL0A 1KB9E 1SJGA 1EZVE 3H1HE 2NUKA 4NB8D 1ULIA 2QPZA 5KKZC 2IBZE 2I7FA 2DE5A 3H1KE 5AEUA 3N0QA 1VM9A 4NBFD 4NB8A 1O7NA 2JZAA 3C0DA 3EN1A 3GZXA 1KYOE 2BMRA 2E74D
chains in the Genus database with same CATH topology
2HMOA 4HM5A 4PD4E 1VCKA 2FYUE 2BMOA 4HM7A 4P1CH 1O7WA 1UUWA 3VMID 4NBFA 1NTME 1ZRTE 1EG9A 5KLIC 4QCKA 1SQXE 2NWFA 1NTZE 1NTKE 4NB9D 5AEWA 4QUPA 4NBCD 2JO6A 1SQVE 3L73E 1SQPE 4NBEA 2YFIA 1G8KB 1L0LE 1WW9A 3VMIA 2ZT9D 2Q3WA 4HKVA 1JM1A 4HM2A 3VMHA 3GCEA 1PP9E 2HMKA 4NBGA 4QDFB 4U3FE 2NUMA 1NYKA 3BCCE 4HJLA 2A06E 3DQYA 4NBCA 3GTSA 2XRXA 2E75D 1VF5D 1RIEA 2E4PA 2NVFA 2HMNA 3VMGD 2YFJA 1O7GA 2B24A 1NU1E 3L74E 2D2CD 3H1JE 3EQQA 2DE7D 3GKEA 2XR8A 3AZCA 1G8JB 3GCFA 1WQLA 4NBDD 3VMGA 4H44D 2BCCE 1ULJA 4HM1A 4P1BH 1UUVA 4PV1D 1L0NE 3CWBE 1Q90C 3D89A 1FQTA 3L72E 4H0LD 2DE7A 2HMJA 4NB9A 2GBXA 3L71E 4HM4A 4AAYB 1O7HA 4HM8A 5KLVE 3VCPA 4NBHD 1PPJE 3GB4A 4NBDA 4QDDA 2E76D 1P84E 2XSOA 2QJKC 3CXHE 4H13D 1Z03A 2HMMA 4QURA 2QJYC 2XSHA 4HM6A 4NBAD 1BE3E 4QDCA 3L70E 3GKQA 3H1IE 3L75E 4QUQA 2HMLA 1SQBE 2NVEA 4NBHA 1O7MA 5HL4A 2YFLA 4QDFA 3VCAA 1Z02A 2DE6D 3GL2A 4NBBD 1NDOA 1RFSA 2YVJB 3GZYA 4NBAA 4HM3A 3GTEA 4EMJB 4AIVA 4HM0A 1O7PA 2BMQA 2E4QA 2DE6A 4NBBA 2NVGA 2ZYLA 4OGQD 4NBED 2YIUC 3FOUA 1BCCE 2GBWA 3GOBA 3CX5E 3VMHD 2CKFA 5CXMA 1SQQE 4NBGD 3TGUE 2DE5D 3H1LE 2QJPC 5BOKA 1Z01A 2B1XA 2FYNC 3GL0A 1KB9E 1SJGA 1EZVE 3H1HE 2NUKA 4NB8D 1ULIA 2QPZA 5KKZC 2IBZE 2I7FA 2DE5A 3H1KE 5AEUA 3N0QA 1VM9A 4NBFD 4NB8A 1O7NA 2JZAA 3C0DA 3EN1A 3GZXA 1KYOE 2BMRA 2E74D
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2HMO A;  4HM5 A;  4PD4 E;  1VCK A;  2FYU E;  2BMO A;  4HM7 A;  4P1C H;  1O7W A;  1UUW A;  3VMI D;  4NBF A;  1NTM E;  1ZRT E;  1EG9 A;  5KLI C;  4QCK A;  1SQX E;  2NWF A;  1NTZ E;  1NTK E;  4NB9 D;  5AEW A;  4QUP A;  4NBC D;  2JO6 A;  1SQV E;  3L73 E;  1SQP E;  4NBE A;  2YFI A;  1G8K B;  1L0L E;  1WW9 A;  3VMI A;  2ZT9 D;  2Q3W A;  4HKV A;  1JM1 A;  4HM2 A;  3VMH A;  3GCE A;  1PP9 E;  2HMK A;  4NBG A;  4QDF B;  4U3F E;  2NUM A;  1NYK A;  3BCC E;  4HJL A;  2A06 E;  3DQY A;  4NBC A;  3GTS A;  2XRX A;  2E75 D;  1VF5 D;  1RIE A;  2E4P A;  2NVF A;  2HMN A;  3VMG D;  2YFJ A;  1O7G A;  2B24 A;  1NU1 E;  3L74 E;  2D2C D;  3H1J E;  3EQQ A;  2DE7 D;  3GKE A;  2XR8 A;  3AZC A;  1G8J B;  3GCF A;  1WQL A;  4NBD D;  3VMG A;  4H44 D;  2BCC E;  1ULJ A;  4HM1 A;  4P1B H;  1UUV A;  4PV1 D;  1L0N E;  3CWB E;  1Q90 C;  3D89 A;  1FQT A;  3L72 E;  4H0L D;  2DE7 A;  2HMJ A;  4NB9 A;  2GBX A;  3L71 E;  4HM4 A;  4AAY B;  1O7H A;  4HM8 A;  5KLV E;  3VCP A;  4NBH D;  1PPJ E;  3GB4 A;  4NBD A;  4QDD A;  2E76 D;  1P84 E;  2XSO A;  2QJK C;  3CXH E;  4H13 D;  1Z03 A;  2HMM A;  4QUR A;  2QJY C;  2XSH A;  4HM6 A;  4NBA D;  1BE3 E;  4QDC A;  3L70 E;  3GKQ A;  3H1I E;  3L75 E;  4QUQ A;  2HML A;  1SQB E;  2NVE A;  4NBH A;  1O7M A;  5HL4 A;  2YFL A;  4QDF A;  3VCA A;  1Z02 A;  2DE6 D;  3GL2 A;  4NBB D;  1NDO A;  1RFS A;  2YVJ B;  3GZY A;  4NBA A;  4HM3 A;  3GTE A;  4EMJ B;  4AIV A;  4HM0 A;  1O7P A;  2BMQ A;  2E4Q A;  2DE6 A;  4NBB A;  2NVG A;  2ZYL A;  4OGQ D;  4NBE D;  2YIU C;  3FOU A;  1BCC E;  2GBW A;  3GOB A;  3CX5 E;  3VMH D;  2CKF A;  5CXM A;  1SQQ E;  4NBG D;  3TGU E;  2DE5 D;  3H1L E;  2QJP C;  5BOK A;  1Z01 A;  2B1X A;  2FYN C;  3GL0 A;  1KB9 E;  1SJG A;  1EZV E;  3H1H E;  2NUK A;  4NB8 D;  1ULI A;  2QPZ A;  5KKZ C;  2IBZ E;  2I7F A;  2DE5 A;  3H1K E;  5AEU A;  3N0Q A;  1VM9 A;  4NBF D;  4NB8 A;  1O7N A;  2JZA A;  3C0D A;  3EN1 A;  3GZX A;  1KYO E;  2BMR A;  2E74 D; 
#chains in the Genus database with same CATH topology
 2HMO A;  4HM5 A;  4PD4 E;  1VCK A;  2FYU E;  2BMO A;  4HM7 A;  4P1C H;  1O7W A;  1UUW A;  3VMI D;  4NBF A;  1NTM E;  1ZRT E;  1EG9 A;  5KLI C;  4QCK A;  1SQX E;  2NWF A;  1NTZ E;  1NTK E;  4NB9 D;  5AEW A;  4QUP A;  4NBC D;  2JO6 A;  1SQV E;  3L73 E;  1SQP E;  4NBE A;  2YFI A;  1G8K B;  1L0L E;  1WW9 A;  3VMI A;  2ZT9 D;  2Q3W A;  4HKV A;  1JM1 A;  4HM2 A;  3VMH A;  3GCE A;  1PP9 E;  2HMK A;  4NBG A;  4QDF B;  4U3F E;  2NUM A;  1NYK A;  3BCC E;  4HJL A;  2A06 E;  3DQY A;  4NBC A;  3GTS A;  2XRX A;  2E75 D;  1VF5 D;  1RIE A;  2E4P A;  2NVF A;  2HMN A;  3VMG D;  2YFJ A;  1O7G A;  2B24 A;  1NU1 E;  3L74 E;  2D2C D;  3H1J E;  3EQQ A;  2DE7 D;  3GKE A;  2XR8 A;  3AZC A;  1G8J B;  3GCF A;  1WQL A;  4NBD D;  3VMG A;  4H44 D;  2BCC E;  1ULJ A;  4HM1 A;  4P1B H;  1UUV A;  4PV1 D;  1L0N E;  3CWB E;  1Q90 C;  3D89 A;  1FQT A;  3L72 E;  4H0L D;  2DE7 A;  2HMJ A;  4NB9 A;  2GBX A;  3L71 E;  4HM4 A;  4AAY B;  1O7H A;  4HM8 A;  5KLV E;  3VCP A;  4NBH D;  1PPJ E;  3GB4 A;  4NBD A;  4QDD A;  2E76 D;  1P84 E;  2XSO A;  2QJK C;  3CXH E;  4H13 D;  1Z03 A;  2HMM A;  4QUR A;  2QJY C;  2XSH A;  4HM6 A;  4NBA D;  1BE3 E;  4QDC A;  3L70 E;  3GKQ A;  3H1I E;  3L75 E;  4QUQ A;  2HML A;  1SQB E;  2NVE A;  4NBH A;  1O7M A;  5HL4 A;  2YFL A;  4QDF A;  3VCA A;  1Z02 A;  2DE6 D;  3GL2 A;  4NBB D;  1NDO A;  1RFS A;  2YVJ B;  3GZY A;  4NBA A;  4HM3 A;  3GTE A;  4EMJ B;  4AIV A;  4HM0 A;  1O7P A;  2BMQ A;  2E4Q A;  2DE6 A;  4NBB A;  2NVG A;  2ZYL A;  4OGQ D;  4NBE D;  2YIU C;  3FOU A;  1BCC E;  2GBW A;  3GOB A;  3CX5 E;  3VMH D;  2CKF A;  5CXM A;  1SQQ E;  4NBG D;  3TGU E;  2DE5 D;  3H1L E;  2QJP C;  5BOK A;  1Z01 A;  2B1X A;  2FYN C;  3GL0 A;  1KB9 E;  1SJG A;  1EZV E;  3H1H E;  2NUK A;  4NB8 D;  1ULI A;  2QPZ A;  5KKZ C;  2IBZ E;  2I7F A;  2DE5 A;  3H1K E;  5AEU A;  3N0Q A;  1VM9 A;  4NBF D;  4NB8 A;  1O7N A;  2JZA A;  3C0D A;  3EN1 A;  3GZX A;  1KYO E;  2BMR A;  2E74 D; 
#chains in the Genus database with same CATH homology
 2HMO A;  4HM5 A;  4PD4 E;  1VCK A;  2FYU E;  2BMO A;  4HM7 A;  4P1C H;  1O7W A;  1UUW A;  3VMI D;  4NBF A;  1NTM E;  1ZRT E;  1EG9 A;  5KLI C;  4QCK A;  1SQX E;  2NWF A;  1NTZ E;  1NTK E;  4NB9 D;  5AEW A;  4QUP A;  4NBC D;  2JO6 A;  1SQV E;  3L73 E;  1SQP E;  4NBE A;  2YFI A;  1G8K B;  1L0L E;  1WW9 A;  3VMI A;  2ZT9 D;  2Q3W A;  4HKV A;  1JM1 A;  4HM2 A;  3VMH A;  3GCE A;  1PP9 E;  2HMK A;  4NBG A;  4QDF B;  4U3F E;  2NUM A;  1NYK A;  3BCC E;  4HJL A;  2A06 E;  3DQY A;  4NBC A;  3GTS A;  2XRX A;  2E75 D;  1VF5 D;  1RIE A;  2E4P A;  2NVF A;  2HMN A;  3VMG D;  2YFJ A;  1O7G A;  2B24 A;  1NU1 E;  3L74 E;  2D2C D;  3H1J E;  3EQQ A;  2DE7 D;  3GKE A;  2XR8 A;  3AZC A;  1G8J B;  3GCF A;  1WQL A;  4NBD D;  3VMG A;  4H44 D;  2BCC E;  1ULJ A;  4HM1 A;  4P1B H;  1UUV A;  4PV1 D;  1L0N E;  3CWB E;  1Q90 C;  3D89 A;  1FQT A;  3L72 E;  4H0L D;  2DE7 A;  2HMJ A;  4NB9 A;  2GBX A;  3L71 E;  4HM4 A;  4AAY B;  1O7H A;  4HM8 A;  5KLV E;  3VCP A;  4NBH D;  1PPJ E;  3GB4 A;  4NBD A;  4QDD A;  2E76 D;  1P84 E;  2XSO A;  2QJK C;  3CXH E;  4H13 D;  1Z03 A;  2HMM A;  4QUR A;  2QJY C;  2XSH A;  4HM6 A;  4NBA D;  1BE3 E;  4QDC A;  3L70 E;  3GKQ A;  3H1I E;  3L75 E;  4QUQ A;  2HML A;  1SQB E;  2NVE A;  4NBH A;  1O7M A;  5HL4 A;  2YFL A;  4QDF A;  3VCA A;  1Z02 A;  2DE6 D;  3GL2 A;  4NBB D;  1NDO A;  1RFS A;  2YVJ B;  3GZY A;  4NBA A;  4HM3 A;  3GTE A;  4EMJ B;  4AIV A;  4HM0 A;  1O7P A;  2BMQ A;  2E4Q A;  2DE6 A;  4NBB A;  2NVG A;  2ZYL A;  4OGQ D;  4NBE D;  2YIU C;  3FOU A;  1BCC E;  2GBW A;  3GOB A;  3CX5 E;  3VMH D;  2CKF A;  5CXM A;  1SQQ E;  4NBG D;  3TGU E;  2DE5 D;  3H1L E;  2QJP C;  5BOK A;  1Z01 A;  2B1X A;  2FYN C;  3GL0 A;  1KB9 E;  1SJG A;  1EZV E;  3H1H E;  2NUK A;  4NB8 D;  1ULI A;  2QPZ A;  5KKZ C;  2IBZ E;  2I7F A;  2DE5 A;  3H1K E;  5AEU A;  3N0Q A;  1VM9 A;  4NBF D;  4NB8 A;  1O7N A;  2JZA A;  3C0D A;  3EN1 A;  3GZX A;  1KYO E;  2BMR A;  2E74 D; 
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