4NBHD

Carbazole-bound oxygenase with gln282 replaced by tyr and ferredoxin complex of carbazole 1,9a-dioxygenase
Total Genus 18
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
18
sequence length
104
structure length
104
Chain Sequence
IWLKVCAASDMQPGTIRRVNRVGAAPLAVYRVGDQFYATEDTCTHGIASLSEGTLDGDVIECPFHGGAFNVCTGMPASSPCTVPLGVFEVEVKEGEVYVAGEKK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural Basis of the Divergent Oxygenation Reactions Catalyzed by the Rieske Non-heme Iron Oxygenase, Carbazole 1,9a-Dioxygenase
pubmed doi rcsb
source organism Janthinobacterium
molecule tags Oxidoreductase
molecule keywords Terminal oxygenase component of carbazole
total genus 18
structure length 104
sequence length 104
chains with identical sequence E, F
ec nomenclature ec 1.14.12.22: Carbazole 1,9a-dioxygenase.
pdb deposition date 2013-10-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
D PF00355 Rieske Rieske [2Fe-2S] domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 4nbhD00
1SQXE 2D2CD 3GL2A 2I7FA 1O7PA 3CX5E 3VMHD 2Q3WA 2DE6D 2HMLA 2BMOA 3D89A 4P1CH 1NTZE 4NBAD 4PV1D 1G8KB 2GBXA 4QDDA 4QUPA 3L74E 2YFLA 5KLIC 2YVJB 4EMJB 4NBCD 2BMQA 1PP9E 3H1JE 3L73E 1VCKA 2YFJA 4H44D 2E76D 4HM0A 3VMGD 1ULJA 4NBGD 3L72E 4AAYB 2HMOA 4H13D 1O7NA 1ZRTE 2CKFA 5BOKA 5KKZC 1Q90C 4HM4A 4HM2A 2NVEA 5AEUA 3H1HE 2BCCE 1P84E 3GTSA 2A06E 1NU1E 2XR8A 1JM1A 2XSHA 4HM8A 1L0NE 2DE7D 2QJPC 2YFIA 5KLVE 3L70E 3VMID 3VCAA 1WQLA 3L71E 2JZAA 4PD4E 5AEWA 2DE5D 1L0LE 3TGUE 4QUQA 2NVGA 1NYKA 4QDFA 4QURA 4H0LD 3CWBE 4NBHD 3VCPA 2NWFA 2ZT9D 2E75D 3EQQA 3FOUA 2IBZE 4NB8D 4OGQD 1VM9A 1SQVE 1O7MA 2HMJA 1G8JB 2E4PA 1NTKE 2HMKA 1NTME 3BCCE 3CXHE 3DQYA 3EN1A 4NB9D 5CXMA 2XSOA 3L75E 4HM3A 2NVFA 1KB9E 3AZCA 2YIUC 2B24A 5HL4A 1EG9A 1FQTA 3GL0A 2E74D 1PPJE 3H1LE 4HM6A 1KYOE 1ULIA 4HM7A 2HMMA 1O7GA 3GKEA 4HKVA 3GOBA 3GZXA 2QPZA 2FYUE 2NUMA 1NDOA 2XRXA 2ZYLA 1O7HA 1EZVE 2NUKA 3GZYA 2FYNC 3C0DA 2QJKC 3H1IE 4HJLA 1SQBE 1O7WA 4HM1A 1BCCE 4U3FE 1SJGA 4QCKA 3H1KE 4HM5A 1BE3E 1VF5D 2HMNA 1RIEA 4P1BH 4QDCA 4QDFB 3GTEA 3N0QA 2B1XA 4NBFD 1UUVA 4NBBD 1UUWA 1SQQE 2QJYC 3GB4A 2BMRA 4NBDD 3GCEA 1RFSA 4AIVA 4NBED 2GBWA 2JO6A 1SQPE 2E4QA
chains in the Genus database with same CATH superfamily
1SQXE 2D2CD 3GL2A 2I7FA 1O7PA 3CX5E 3VMHD 2Q3WA 2DE6D 2HMLA 2BMOA 3D89A 4P1CH 1NTZE 4NBAD 4PV1D 1G8KB 2GBXA 4QDDA 4QUPA 3L74E 2YFLA 5KLIC 2YVJB 4EMJB 4NBCD 2BMQA 1PP9E 3H1JE 3L73E 1VCKA 2YFJA 4H44D 2E76D 4HM0A 3VMGD 1ULJA 4NBGD 3L72E 4AAYB 2HMOA 4H13D 1O7NA 1ZRTE 2CKFA 5BOKA 5KKZC 1Q90C 4HM4A 4HM2A 2NVEA 5AEUA 3H1HE 2BCCE 1P84E 3GTSA 2A06E 1NU1E 2XR8A 1JM1A 2XSHA 4HM8A 1L0NE 2DE7D 2QJPC 2YFIA 5KLVE 3L70E 3VMID 3VCAA 1WQLA 3L71E 2JZAA 4PD4E 5AEWA 2DE5D 1L0LE 3TGUE 4QUQA 2NVGA 1NYKA 4QDFA 4QURA 4H0LD 3CWBE 4NBHD 3VCPA 2NWFA 2ZT9D 2E75D 3EQQA 3FOUA 2IBZE 4NB8D 4OGQD 1VM9A 1SQVE 1O7MA 2HMJA 1G8JB 2E4PA 1NTKE 2HMKA 1NTME 3BCCE 3CXHE 3DQYA 3EN1A 4NB9D 5CXMA 2XSOA 3L75E 4HM3A 2NVFA 1KB9E 3AZCA 2YIUC 2B24A 5HL4A 1EG9A 1FQTA 3GL0A 2E74D 1PPJE 3H1LE 4HM6A 1KYOE 1ULIA 4HM7A 2HMMA 1O7GA 3GKEA 4HKVA 3GOBA 3GZXA 2QPZA 2FYUE 2NUMA 1NDOA 2XRXA 2ZYLA 1O7HA 1EZVE 2NUKA 3GZYA 2FYNC 3C0DA 2QJKC 3H1IE 4HJLA 1SQBE 1O7WA 4HM1A 1BCCE 4U3FE 1SJGA 4QCKA 3H1KE 4HM5A 1BE3E 1VF5D 2HMNA 1RIEA 4P1BH 4QDCA 4QDFB 3GTEA 3N0QA 2B1XA 4NBFD 1UUVA 4NBBD 1UUWA 1SQQE 2QJYC 3GB4A 2BMRA 4NBDD 3GCEA 1RFSA 4AIVA 4NBED 2GBWA 2JO6A 1SQPE 2E4QA
chains in the Genus database with same CATH topology
1SQXE 2D2CD 3GL2A 2I7FA 1O7PA 3CX5E 3VMHD 2Q3WA 2DE6D 2HMLA 2BMOA 3D89A 4P1CH 1NTZE 4NBAD 4PV1D 1G8KB 2GBXA 4QDDA 4QUPA 3L74E 2YFLA 5KLIC 2YVJB 4EMJB 4NBCD 2BMQA 1PP9E 3H1JE 3L73E 1VCKA 2YFJA 4H44D 2E76D 4HM0A 3VMGD 1ULJA 4NBGD 3L72E 4AAYB 2HMOA 4H13D 1O7NA 1ZRTE 2CKFA 5BOKA 5KKZC 1Q90C 4HM4A 4HM2A 2NVEA 5AEUA 3H1HE 2BCCE 1P84E 3GTSA 2A06E 1NU1E 2XR8A 1JM1A 2XSHA 4HM8A 1L0NE 2DE7D 2QJPC 2YFIA 5KLVE 3L70E 3VMID 3VCAA 1WQLA 3L71E 2JZAA 4PD4E 5AEWA 2DE5D 1L0LE 3TGUE 4QUQA 2NVGA 1NYKA 4QDFA 4QURA 4H0LD 3CWBE 4NBHD 3VCPA 2NWFA 2ZT9D 2E75D 3EQQA 3FOUA 2IBZE 4NB8D 4OGQD 1VM9A 1SQVE 1O7MA 2HMJA 1G8JB 2E4PA 1NTKE 2HMKA 1NTME 3BCCE 3CXHE 3DQYA 3EN1A 4NB9D 5CXMA 2XSOA 3L75E 4HM3A 2NVFA 1KB9E 3AZCA 2YIUC 2B24A 5HL4A 1EG9A 1FQTA 3GL0A 2E74D 1PPJE 3H1LE 4HM6A 1KYOE 1ULIA 4HM7A 2HMMA 1O7GA 3GKEA 4HKVA 3GOBA 3GZXA 2QPZA 2FYUE 2NUMA 1NDOA 2XRXA 2ZYLA 1O7HA 1EZVE 2NUKA 3GZYA 2FYNC 3C0DA 2QJKC 3H1IE 4HJLA 1SQBE 1O7WA 4HM1A 1BCCE 4U3FE 1SJGA 4QCKA 3H1KE 4HM5A 1BE3E 1VF5D 2HMNA 1RIEA 4P1BH 4QDCA 4QDFB 3GTEA 3N0QA 2B1XA 4NBFD 1UUVA 4NBBD 1UUWA 1SQQE 2QJYC 3GB4A 2BMRA 4NBDD 3GCEA 1RFSA 4AIVA 4NBED 2GBWA 2JO6A 1SQPE 2E4QA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1SQX E;  2D2C D;  3GL2 A;  2I7F A;  1O7P A;  3CX5 E;  3VMH D;  2Q3W A;  2DE6 D;  2HML A;  2BMO A;  3D89 A;  4P1C H;  1NTZ E;  4NBA D;  4PV1 D;  1G8K B;  2GBX A;  4QDD A;  4QUP A;  3L74 E;  2YFL A;  5KLI C;  2YVJ B;  4EMJ B;  4NBC D;  2BMQ A;  1PP9 E;  3H1J E;  3L73 E;  1VCK A;  2YFJ A;  4H44 D;  2E76 D;  4HM0 A;  3VMG D;  1ULJ A;  4NBG D;  3L72 E;  4AAY B;  2HMO A;  4H13 D;  1O7N A;  1ZRT E;  2CKF A;  5BOK A;  5KKZ C;  1Q90 C;  4HM4 A;  4HM2 A;  2NVE A;  5AEU A;  3H1H E;  2BCC E;  1P84 E;  3GTS A;  2A06 E;  1NU1 E;  2XR8 A;  1JM1 A;  2XSH A;  4HM8 A;  1L0N E;  2DE7 D;  2QJP C;  2YFI A;  5KLV E;  3L70 E;  3VMI D;  3VCA A;  1WQL A;  3L71 E;  2JZA A;  4PD4 E;  5AEW A;  2DE5 D;  1L0L E;  3TGU E;  4QUQ A;  2NVG A;  1NYK A;  4QDF A;  4QUR A;  4H0L D;  3CWB E;  4NBH D;  3VCP A;  2NWF A;  2ZT9 D;  2E75 D;  3EQQ A;  3FOU A;  2IBZ E;  4NB8 D;  4OGQ D;  1VM9 A;  1SQV E;  1O7M A;  2HMJ A;  1G8J B;  2E4P A;  1NTK E;  2HMK A;  1NTM E;  3BCC E;  3CXH E;  3DQY A;  3EN1 A;  4NB9 D;  5CXM A;  2XSO A;  3L75 E;  4HM3 A;  2NVF A;  1KB9 E;  3AZC A;  2YIU C;  2B24 A;  5HL4 A;  1EG9 A;  1FQT A;  3GL0 A;  2E74 D;  1PPJ E;  3H1L E;  4HM6 A;  1KYO E;  1ULI A;  4HM7 A;  2HMM A;  1O7G A;  3GKE A;  4HKV A;  3GOB A;  3GZX A;  2QPZ A;  2FYU E;  2NUM A;  1NDO A;  2XRX A;  2ZYL A;  1O7H A;  1EZV E;  2NUK A;  3GZY A;  2FYN C;  3C0D A;  2QJK C;  3H1I E;  4HJL A;  1SQB E;  1O7W A;  4HM1 A;  1BCC E;  4U3F E;  1SJG A;  4QCK A;  3H1K E;  4HM5 A;  1BE3 E;  1VF5 D;  2HMN A;  1RIE A;  4P1B H;  4QDC A;  4QDF B;  3GTE A;  3N0Q A;  2B1X A;  4NBF D;  1UUV A;  4NBB D;  1UUW A;  1SQQ E;  2QJY C;  3GB4 A;  2BMR A;  4NBD D;  3GCE A;  1RFS A;  4AIV A;  4NBE D;  2GBW A;  2JO6 A;  1SQP E;  2E4Q A; 
#chains in the Genus database with same CATH topology
 1SQX E;  2D2C D;  3GL2 A;  2I7F A;  1O7P A;  3CX5 E;  3VMH D;  2Q3W A;  2DE6 D;  2HML A;  2BMO A;  3D89 A;  4P1C H;  1NTZ E;  4NBA D;  4PV1 D;  1G8K B;  2GBX A;  4QDD A;  4QUP A;  3L74 E;  2YFL A;  5KLI C;  2YVJ B;  4EMJ B;  4NBC D;  2BMQ A;  1PP9 E;  3H1J E;  3L73 E;  1VCK A;  2YFJ A;  4H44 D;  2E76 D;  4HM0 A;  3VMG D;  1ULJ A;  4NBG D;  3L72 E;  4AAY B;  2HMO A;  4H13 D;  1O7N A;  1ZRT E;  2CKF A;  5BOK A;  5KKZ C;  1Q90 C;  4HM4 A;  4HM2 A;  2NVE A;  5AEU A;  3H1H E;  2BCC E;  1P84 E;  3GTS A;  2A06 E;  1NU1 E;  2XR8 A;  1JM1 A;  2XSH A;  4HM8 A;  1L0N E;  2DE7 D;  2QJP C;  2YFI A;  5KLV E;  3L70 E;  3VMI D;  3VCA A;  1WQL A;  3L71 E;  2JZA A;  4PD4 E;  5AEW A;  2DE5 D;  1L0L E;  3TGU E;  4QUQ A;  2NVG A;  1NYK A;  4QDF A;  4QUR A;  4H0L D;  3CWB E;  4NBH D;  3VCP A;  2NWF A;  2ZT9 D;  2E75 D;  3EQQ A;  3FOU A;  2IBZ E;  4NB8 D;  4OGQ D;  1VM9 A;  1SQV E;  1O7M A;  2HMJ A;  1G8J B;  2E4P A;  1NTK E;  2HMK A;  1NTM E;  3BCC E;  3CXH E;  3DQY A;  3EN1 A;  4NB9 D;  5CXM A;  2XSO A;  3L75 E;  4HM3 A;  2NVF A;  1KB9 E;  3AZC A;  2YIU C;  2B24 A;  5HL4 A;  1EG9 A;  1FQT A;  3GL0 A;  2E74 D;  1PPJ E;  3H1L E;  4HM6 A;  1KYO E;  1ULI A;  4HM7 A;  2HMM A;  1O7G A;  3GKE A;  4HKV A;  3GOB A;  3GZX A;  2QPZ A;  2FYU E;  2NUM A;  1NDO A;  2XRX A;  2ZYL A;  1O7H A;  1EZV E;  2NUK A;  3GZY A;  2FYN C;  3C0D A;  2QJK C;  3H1I E;  4HJL A;  1SQB E;  1O7W A;  4HM1 A;  1BCC E;  4U3F E;  1SJG A;  4QCK A;  3H1K E;  4HM5 A;  1BE3 E;  1VF5 D;  2HMN A;  1RIE A;  4P1B H;  4QDC A;  4QDF B;  3GTE A;  3N0Q A;  2B1X A;  4NBF D;  1UUV A;  4NBB D;  1UUW A;  1SQQ E;  2QJY C;  3GB4 A;  2BMR A;  4NBD D;  3GCE A;  1RFS A;  4AIV A;  4NBE D;  2GBW A;  2JO6 A;  1SQP E;  2E4Q A; 
#chains in the Genus database with same CATH homology
 1SQX E;  2D2C D;  3GL2 A;  2I7F A;  1O7P A;  3CX5 E;  3VMH D;  2Q3W A;  2DE6 D;  2HML A;  2BMO A;  3D89 A;  4P1C H;  1NTZ E;  4NBA D;  4PV1 D;  1G8K B;  2GBX A;  4QDD A;  4QUP A;  3L74 E;  2YFL A;  5KLI C;  2YVJ B;  4EMJ B;  4NBC D;  2BMQ A;  1PP9 E;  3H1J E;  3L73 E;  1VCK A;  2YFJ A;  4H44 D;  2E76 D;  4HM0 A;  3VMG D;  1ULJ A;  4NBG D;  3L72 E;  4AAY B;  2HMO A;  4H13 D;  1O7N A;  1ZRT E;  2CKF A;  5BOK A;  5KKZ C;  1Q90 C;  4HM4 A;  4HM2 A;  2NVE A;  5AEU A;  3H1H E;  2BCC E;  1P84 E;  3GTS A;  2A06 E;  1NU1 E;  2XR8 A;  1JM1 A;  2XSH A;  4HM8 A;  1L0N E;  2DE7 D;  2QJP C;  2YFI A;  5KLV E;  3L70 E;  3VMI D;  3VCA A;  1WQL A;  3L71 E;  2JZA A;  4PD4 E;  5AEW A;  2DE5 D;  1L0L E;  3TGU E;  4QUQ A;  2NVG A;  1NYK A;  4QDF A;  4QUR A;  4H0L D;  3CWB E;  4NBH D;  3VCP A;  2NWF A;  2ZT9 D;  2E75 D;  3EQQ A;  3FOU A;  2IBZ E;  4NB8 D;  4OGQ D;  1VM9 A;  1SQV E;  1O7M A;  2HMJ A;  1G8J B;  2E4P A;  1NTK E;  2HMK A;  1NTM E;  3BCC E;  3CXH E;  3DQY A;  3EN1 A;  4NB9 D;  5CXM A;  2XSO A;  3L75 E;  4HM3 A;  2NVF A;  1KB9 E;  3AZC A;  2YIU C;  2B24 A;  5HL4 A;  1EG9 A;  1FQT A;  3GL0 A;  2E74 D;  1PPJ E;  3H1L E;  4HM6 A;  1KYO E;  1ULI A;  4HM7 A;  2HMM A;  1O7G A;  3GKE A;  4HKV A;  3GOB A;  3GZX A;  2QPZ A;  2FYU E;  2NUM A;  1NDO A;  2XRX A;  2ZYL A;  1O7H A;  1EZV E;  2NUK A;  3GZY A;  2FYN C;  3C0D A;  2QJK C;  3H1I E;  4HJL A;  1SQB E;  1O7W A;  4HM1 A;  1BCC E;  4U3F E;  1SJG A;  4QCK A;  3H1K E;  4HM5 A;  1BE3 E;  1VF5 D;  2HMN A;  1RIE A;  4P1B H;  4QDC A;  4QDF B;  3GTE A;  3N0Q A;  2B1X A;  4NBF D;  1UUV A;  4NBB D;  1UUW A;  1SQQ E;  2QJY C;  3GB4 A;  2BMR A;  4NBD D;  3GCE A;  1RFS A;  4AIV A;  4NBE D;  2GBW A;  2JO6 A;  1SQP E;  2E4Q A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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