4QUQA

Crystal structure of stachydrine demethylase in complex with azide
Total Genus 126
50100150200250300350020406080100120
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
126
sequence length
413
structure length
401
Chain Sequence
NLYFQSMMTANPTSIHQRLDRRLSGFSLEQPFYTSPEVYALDLQHIFYKQWLYAVPVCQLAKAGSYTTLRVGAYEVVIVRSRDGEVRAFHNSCRHRGSLICKARQGQVAKLVCPYHQWTYELDGKLIWANDMGPDFDASKYGLKPVNLRNLDGLIYICLSDTPPDFQTFAQLARPYLEVHDLKDAKVAFTSTIIEKGNWKLVWENNRECYHCSSNHPALCRSFPGVSKKLQAHFDRCEAAGTPAQFVLAGDGQYRLARMPLQEKALSYTMDGKAAVSRHLGRVAPPDAGTLLMFHYPSTWNHFLPDHSLTFRVMPISPTETEVTTTWLVHKDAVEGVDYDLKRLTEVWIATNDEDREIVETNQQGILSPAYVPGPYSPGQESGVMQFVDWYAASLERALAP
50100150200250300350300200100
020406080100120Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH2 (8-14)EMPTYAH4 (29-39)TI1 (16-19)AH10 (387-404)AH3 (23-27)AH9 (346-372)AH6 (192-200)AH7 (204-214)TIV1 (40-43)TI2 (39-42)S1 (44-49)3H1 (50-53)S3 (67-73)S12 (252-253)AH5 (159-172)S14 (295-300)TI9 (309-312)TVIII3 (153-156)S2 (58-64)S4 (79-83)TIV2 (63-66)TIV6 (106-109)TVIII2 (101-104)TI3 (74-77)TIV3 (86-89)TIV8 (122-125)TIV9 (143-146)S9 (138-144)TIV4 (87-90)S5 (98-100)TIV5 (96-99)TVIII1 (92-95)TI4 (114-117)S8 (118-121)S7 (112-114)S10 (147-151)3H3 (175-177)AH8 (233-245)S11 (178-188)TII2 (339-342)TI10 (322-325)O2 (202-205)TI12 (373-376)TI14 (383-386)TVIII5 (281-284)TI6 (254-257)TI8 (290-293)S13 (259-264)TII'2 (267-270)S15 (304-308)TVIa1 (300-303)TIV11 (340-343)TI7 (274-277)TI11 (335-338)TVIII4 (279-282)S16 (313-322)S17 (325-335)TIV12 (341-344)TI13 (382-385)AH1 (-6-2)TII1 (55-58)S6 (104-105)TI5 (126-129)O1 (272-274)Updating...
connected with : NaN
molecule tags Oxidoreductase
source organism Sinorhizobium meliloti 1021
publication title Tracking photoelectron induced in-crystallo enzyme catalysis
rcsb
molecule keywords Monoxygenase; demethylase
total genus 126
structure length 401
sequence length 413
ec nomenclature ec 1.-.-.-:
pdb deposition date 2014-07-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00355 Rieske Rieske [2Fe-2S] domain
A PF00848 Ring_hydroxyl_A Ring hydroxylating alpha subunit (catalytic domain)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 4quqA02
3.90.380.10 Alpha Beta Alpha-Beta Complex Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 4quqA01
2D2CD 2E74D 2BCCE 3GTEA 5AEUA 2IBZE 2ZT9D 4NBAA 1NTME 5KLIC 2DE6D 2E4QA 4QUPA 2YFIA 5KLVE 4QDFB 4U3FE 4NB9A 3VMGD 1RIEA 3TGUE 4NBDD 2DE7A 4P1CH 1P84E 1PPJE 1KB9E 2BMRA 3DQYA 5KKZC 1EZVE 4NBBD 2NWFA 3L70E 2DE5A 3GCEA 2XRXA 3EQQA 4QURA 1Q90C 2A06E 3H1IE 1L0NE 4QDFA 3VMHA 2BMOA 4HM7A 3VMID 2Q3WA 2QJKC 4P1BH 1Z02A 3H1JE 1ULIA 4H0LD 1SQPE 1SJGA 1G8JB 4NBGD 2DE6A 1O7GA 4HM5A 3H1KE 1UUWA 3VMGA 2YVJB 1O7PA 1KYOE 3L74E 1NTKE 4NBDA 4HM2A 1L0LE 1FQTA 3L71E 3CWBE 1EG9A 4NBBA 4PV1D 1SQBE 2FYNC 3H1HE 3GCFA 3GZXA 3L72E 4NB8D 4EMJB 5HL4A 1BCCE 2E4PA 3FOUA 4HM1A 3VMIA 3GKQA 4QDDA 2CKFA 4HKVA 1WQLA 1SQXE 2GBWA 4HJLA 4NBGA 4H13D 3D89A 2NVEA 2XR8A 5CXMA 2QJPC 3H1LE 1RFSA 3L73E 2HMKA 4AIVA 3GOBA 4HM8A 1UUVA 3VCPA 4NBCD 3GL2A 4PD4E 4NBED 1O7WA 3VMHD 4AAYB 1SQQE 1JM1A 2JZAA 2FYUE 1NDOA 2NVFA 3EN1A 4H44D 2HMJA 4HM3A 2GBXA 3GKEA 2NUMA 4QDCA 4NB8A 4HM4A 1Z01A 2HMLA 4NBFD 5AEWA 1Z03A 2NVGA 4QUQA 2B1XA 1VM9A 1O7NA 2BMQA 1ULJA 4NBHD 1ZRTE 3N0QA 3GTSA 1WW9A 3L75E 2HMNA 3VCAA 2ZYLA 3C0DA 1NU1E 3GB4A 2HMOA 1VCKA 2B24A 3CX5E 2XSHA 4HM0A 1NTZE 4NBCA 2QJYC 4NBEA 3AZCA 3BCCE 1SQVE 2YFJA 4NBAD 1O7HA 2QPZA 1NYKA 3GZYA 2XSOA 3GL0A 2YIUC 4NB9D 3CXHE 2I7FA 1G8KB 4NBFA 2NUKA 2YFLA 2DE7D 2HMMA 4NBHA 1PP9E 2E75D 4OGQD 2JO6A 2DE5D 2E76D 1O7MA 1VF5D 5BOKA 1BE3E 4QCKA 4HM6A
chains in the Genus database with same CATH superfamily
2D2CD 2E74D 2BCCE 3GTEA 5AEUA 2IBZE 2ZT9D 4NBAA 1NTME 5KLIC 2DE6D 2E4QA 4QUPA 2YFIA 5KLVE 4QDFB 4U3FE 4NB9A 3VMGD 1RIEA 3TGUE 4NBDD 2DE7A 4P1CH 1P84E 1PPJE 1KB9E 2BMRA 3DQYA 5KKZC 1EZVE 4NBBD 2NWFA 3L70E 2DE5A 3GCEA 2XRXA 3EQQA 4QURA 1Q90C 2A06E 3H1IE 1L0NE 4QDFA 3VMHA 2BMOA 4HM7A 3VMID 2Q3WA 2QJKC 4P1BH 1Z02A 3H1JE 1ULIA 4H0LD 1SQPE 1SJGA 1G8JB 4NBGD 2DE6A 1O7GA 4HM5A 3H1KE 1UUWA 3VMGA 2YVJB 1O7PA 1KYOE 3L74E 1NTKE 4NBDA 4HM2A 1L0LE 1FQTA 3L71E 3CWBE 1EG9A 4NBBA 4PV1D 1SQBE 2FYNC 3H1HE 3GCFA 3GZXA 3L72E 4NB8D 4EMJB 5HL4A 1BCCE 2E4PA 3FOUA 4HM1A 3VMIA 3GKQA 4QDDA 2CKFA 4HKVA 1WQLA 1SQXE 2GBWA 4HJLA 4NBGA 4H13D 3D89A 2NVEA 2XR8A 5CXMA 2QJPC 3H1LE 1RFSA 3L73E 2HMKA 4AIVA 3GOBA 4HM8A 1UUVA 3VCPA 4NBCD 3GL2A 4PD4E 4NBED 1O7WA 3VMHD 4AAYB 1SQQE 1JM1A 2JZAA 2FYUE 1NDOA 2NVFA 3EN1A 4H44D 2HMJA 4HM3A 2GBXA 3GKEA 2NUMA 4QDCA 4NB8A 4HM4A 1Z01A 2HMLA 4NBFD 5AEWA 1Z03A 2NVGA 4QUQA 2B1XA 1VM9A 1O7NA 2BMQA 1ULJA 4NBHD 1ZRTE 3N0QA 3GTSA 1WW9A 3L75E 2HMNA 3VCAA 2ZYLA 3C0DA 1NU1E 3GB4A 2HMOA 1VCKA 2B24A 3CX5E 2XSHA 4HM0A 1NTZE 4NBCA 2QJYC 4NBEA 3AZCA 3BCCE 1SQVE 2YFJA 4NBAD 1O7HA 2QPZA 1NYKA 3GZYA 2XSOA 3GL0A 2YIUC 4NB9D 3CXHE 2I7FA 1G8KB 4NBFA 2NUKA 2YFLA 2DE7D 2HMMA 4NBHA 1PP9E 2E75D 4OGQD 2JO6A 2DE5D 2E76D 1O7MA 1VF5D 5BOKA 1BE3E 4QCKA 4HM6A
chains in the Genus database with same CATH topology
2D2CD 2E74D 2BCCE 3GTEA 5AEUA 2IBZE 2ZT9D 4NBAA 1NTME 5KLIC 2DE6D 2E4QA 4QUPA 2YFIA 5KLVE 4QDFB 4U3FE 4NB9A 3VMGD 1RIEA 3TGUE 4NBDD 2DE7A 4P1CH 1P84E 1PPJE 1KB9E 2BMRA 3DQYA 5KKZC 1EZVE 4NBBD 2NWFA 3L70E 2DE5A 3GCEA 2XRXA 3EQQA 4QURA 1Q90C 2A06E 3H1IE 1L0NE 4QDFA 3VMHA 2BMOA 4HM7A 3VMID 2Q3WA 2QJKC 4P1BH 1Z02A 3H1JE 1ULIA 4H0LD 1SQPE 1SJGA 1G8JB 4NBGD 2DE6A 1O7GA 4HM5A 3H1KE 1UUWA 3VMGA 2YVJB 1O7PA 1KYOE 3L74E 1NTKE 4NBDA 4HM2A 1L0LE 1FQTA 3L71E 3CWBE 1EG9A 4NBBA 4PV1D 1SQBE 2FYNC 3H1HE 3GCFA 3GZXA 3L72E 4NB8D 4EMJB 5HL4A 1BCCE 2E4PA 3FOUA 4HM1A 3VMIA 3GKQA 4QDDA 2CKFA 4HKVA 1WQLA 1SQXE 2GBWA 4HJLA 4NBGA 4H13D 3D89A 2NVEA 2XR8A 5CXMA 2QJPC 3H1LE 1RFSA 3L73E 2HMKA 4AIVA 3GOBA 4HM8A 1UUVA 3VCPA 4NBCD 3GL2A 4PD4E 4NBED 1O7WA 3VMHD 4AAYB 1SQQE 1JM1A 2JZAA 2FYUE 1NDOA 2NVFA 3EN1A 4H44D 2HMJA 4HM3A 2GBXA 3GKEA 2NUMA 4QDCA 4NB8A 4HM4A 1Z01A 2HMLA 4NBFD 5AEWA 1Z03A 2NVGA 4QUQA 2B1XA 1VM9A 1O7NA 2BMQA 1ULJA 4NBHD 1ZRTE 3N0QA 3GTSA 1WW9A 3L75E 2HMNA 3VCAA 2ZYLA 3C0DA 1NU1E 3GB4A 2HMOA 1VCKA 2B24A 3CX5E 2XSHA 4HM0A 1NTZE 4NBCA 2QJYC 4NBEA 3AZCA 3BCCE 1SQVE 2YFJA 4NBAD 1O7HA 2QPZA 1NYKA 3GZYA 2XSOA 3GL0A 2YIUC 4NB9D 3CXHE 2I7FA 1G8KB 4NBFA 2NUKA 2YFLA 2DE7D 2HMMA 4NBHA 1PP9E 2E75D 4OGQD 2JO6A 2DE5D 2E76D 1O7MA 1VF5D 5BOKA 1BE3E 4QCKA 4HM6A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2D2C D;  2E74 D;  2BCC E;  3GTE A;  5AEU A;  2IBZ E;  2ZT9 D;  4NBA A;  1NTM E;  5KLI C;  2DE6 D;  2E4Q A;  4QUP A;  2YFI A;  5KLV E;  4QDF B;  4U3F E;  4NB9 A;  3VMG D;  1RIE A;  3TGU E;  4NBD D;  2DE7 A;  4P1C H;  1P84 E;  1PPJ E;  1KB9 E;  2BMR A;  3DQY A;  5KKZ C;  1EZV E;  4NBB D;  2NWF A;  3L70 E;  2DE5 A;  3GCE A;  2XRX A;  3EQQ A;  4QUR A;  1Q90 C;  2A06 E;  3H1I E;  1L0N E;  4QDF A;  3VMH A;  2BMO A;  4HM7 A;  3VMI D;  2Q3W A;  2QJK C;  4P1B H;  1Z02 A;  3H1J E;  1ULI A;  4H0L D;  1SQP E;  1SJG A;  1G8J B;  4NBG D;  2DE6 A;  1O7G A;  4HM5 A;  3H1K E;  1UUW A;  3VMG A;  2YVJ B;  1O7P A;  1KYO E;  3L74 E;  1NTK E;  4NBD A;  4HM2 A;  1L0L E;  1FQT A;  3L71 E;  3CWB E;  1EG9 A;  4NBB A;  4PV1 D;  1SQB E;  2FYN C;  3H1H E;  3GCF A;  3GZX A;  3L72 E;  4NB8 D;  4EMJ B;  5HL4 A;  1BCC E;  2E4P A;  3FOU A;  4HM1 A;  3VMI A;  3GKQ A;  4QDD A;  2CKF A;  4HKV A;  1WQL A;  1SQX E;  2GBW A;  4HJL A;  4NBG A;  4H13 D;  3D89 A;  2NVE A;  2XR8 A;  5CXM A;  2QJP C;  3H1L E;  1RFS A;  3L73 E;  2HMK A;  4AIV A;  3GOB A;  4HM8 A;  1UUV A;  3VCP A;  4NBC D;  3GL2 A;  4PD4 E;  4NBE D;  1O7W A;  3VMH D;  4AAY B;  1SQQ E;  1JM1 A;  2JZA A;  2FYU E;  1NDO A;  2NVF A;  3EN1 A;  4H44 D;  2HMJ A;  4HM3 A;  2GBX A;  3GKE A;  2NUM A;  4QDC A;  4NB8 A;  4HM4 A;  1Z01 A;  2HML A;  4NBF D;  5AEW A;  1Z03 A;  2NVG A;  4QUQ A;  2B1X A;  1VM9 A;  1O7N A;  2BMQ A;  1ULJ A;  4NBH D;  1ZRT E;  3N0Q A;  3GTS A;  1WW9 A;  3L75 E;  2HMN A;  3VCA A;  2ZYL A;  3C0D A;  1NU1 E;  3GB4 A;  2HMO A;  1VCK A;  2B24 A;  3CX5 E;  2XSH A;  4HM0 A;  1NTZ E;  4NBC A;  2QJY C;  4NBE A;  3AZC A;  3BCC E;  1SQV E;  2YFJ A;  4NBA D;  1O7H A;  2QPZ A;  1NYK A;  3GZY A;  2XSO A;  3GL0 A;  2YIU C;  4NB9 D;  3CXH E;  2I7F A;  1G8K B;  4NBF A;  2NUK A;  2YFL A;  2DE7 D;  2HMM A;  4NBH A;  1PP9 E;  2E75 D;  4OGQ D;  2JO6 A;  2DE5 D;  2E76 D;  1O7M A;  1VF5 D;  5BOK A;  1BE3 E;  4QCK A;  4HM6 A; 
#chains in the Genus database with same CATH topology
 2D2C D;  2E74 D;  2BCC E;  3GTE A;  5AEU A;  2IBZ E;  2ZT9 D;  4NBA A;  1NTM E;  5KLI C;  2DE6 D;  2E4Q A;  4QUP A;  2YFI A;  5KLV E;  4QDF B;  4U3F E;  4NB9 A;  3VMG D;  1RIE A;  3TGU E;  4NBD D;  2DE7 A;  4P1C H;  1P84 E;  1PPJ E;  1KB9 E;  2BMR A;  3DQY A;  5KKZ C;  1EZV E;  4NBB D;  2NWF A;  3L70 E;  2DE5 A;  3GCE A;  2XRX A;  3EQQ A;  4QUR A;  1Q90 C;  2A06 E;  3H1I E;  1L0N E;  4QDF A;  3VMH A;  2BMO A;  4HM7 A;  3VMI D;  2Q3W A;  2QJK C;  4P1B H;  1Z02 A;  3H1J E;  1ULI A;  4H0L D;  1SQP E;  1SJG A;  1G8J B;  4NBG D;  2DE6 A;  1O7G A;  4HM5 A;  3H1K E;  1UUW A;  3VMG A;  2YVJ B;  1O7P A;  1KYO E;  3L74 E;  1NTK E;  4NBD A;  4HM2 A;  1L0L E;  1FQT A;  3L71 E;  3CWB E;  1EG9 A;  4NBB A;  4PV1 D;  1SQB E;  2FYN C;  3H1H E;  3GCF A;  3GZX A;  3L72 E;  4NB8 D;  4EMJ B;  5HL4 A;  1BCC E;  2E4P A;  3FOU A;  4HM1 A;  3VMI A;  3GKQ A;  4QDD A;  2CKF A;  4HKV A;  1WQL A;  1SQX E;  2GBW A;  4HJL A;  4NBG A;  4H13 D;  3D89 A;  2NVE A;  2XR8 A;  5CXM A;  2QJP C;  3H1L E;  1RFS A;  3L73 E;  2HMK A;  4AIV A;  3GOB A;  4HM8 A;  1UUV A;  3VCP A;  4NBC D;  3GL2 A;  4PD4 E;  4NBE D;  1O7W A;  3VMH D;  4AAY B;  1SQQ E;  1JM1 A;  2JZA A;  2FYU E;  1NDO A;  2NVF A;  3EN1 A;  4H44 D;  2HMJ A;  4HM3 A;  2GBX A;  3GKE A;  2NUM A;  4QDC A;  4NB8 A;  4HM4 A;  1Z01 A;  2HML A;  4NBF D;  5AEW A;  1Z03 A;  2NVG A;  4QUQ A;  2B1X A;  1VM9 A;  1O7N A;  2BMQ A;  1ULJ A;  4NBH D;  1ZRT E;  3N0Q A;  3GTS A;  1WW9 A;  3L75 E;  2HMN A;  3VCA A;  2ZYL A;  3C0D A;  1NU1 E;  3GB4 A;  2HMO A;  1VCK A;  2B24 A;  3CX5 E;  2XSH A;  4HM0 A;  1NTZ E;  4NBC A;  2QJY C;  4NBE A;  3AZC A;  3BCC E;  1SQV E;  2YFJ A;  4NBA D;  1O7H A;  2QPZ A;  1NYK A;  3GZY A;  2XSO A;  3GL0 A;  2YIU C;  4NB9 D;  3CXH E;  2I7F A;  1G8K B;  4NBF A;  2NUK A;  2YFL A;  2DE7 D;  2HMM A;  4NBH A;  1PP9 E;  2E75 D;  4OGQ D;  2JO6 A;  2DE5 D;  2E76 D;  1O7M A;  1VF5 D;  5BOK A;  1BE3 E;  4QCK A;  4HM6 A; 
#chains in the Genus database with same CATH homology
 2D2C D;  2E74 D;  2BCC E;  3GTE A;  5AEU A;  2IBZ E;  2ZT9 D;  4NBA A;  1NTM E;  5KLI C;  2DE6 D;  2E4Q A;  4QUP A;  2YFI A;  5KLV E;  4QDF B;  4U3F E;  4NB9 A;  3VMG D;  1RIE A;  3TGU E;  4NBD D;  2DE7 A;  4P1C H;  1P84 E;  1PPJ E;  1KB9 E;  2BMR A;  3DQY A;  5KKZ C;  1EZV E;  4NBB D;  2NWF A;  3L70 E;  2DE5 A;  3GCE A;  2XRX A;  3EQQ A;  4QUR A;  1Q90 C;  2A06 E;  3H1I E;  1L0N E;  4QDF A;  3VMH A;  2BMO A;  4HM7 A;  3VMI D;  2Q3W A;  2QJK C;  4P1B H;  1Z02 A;  3H1J E;  1ULI A;  4H0L D;  1SQP E;  1SJG A;  1G8J B;  4NBG D;  2DE6 A;  1O7G A;  4HM5 A;  3H1K E;  1UUW A;  3VMG A;  2YVJ B;  1O7P A;  1KYO E;  3L74 E;  1NTK E;  4NBD A;  4HM2 A;  1L0L E;  1FQT A;  3L71 E;  3CWB E;  1EG9 A;  4NBB A;  4PV1 D;  1SQB E;  2FYN C;  3H1H E;  3GCF A;  3GZX A;  3L72 E;  4NB8 D;  4EMJ B;  5HL4 A;  1BCC E;  2E4P A;  3FOU A;  4HM1 A;  3VMI A;  3GKQ A;  4QDD A;  2CKF A;  4HKV A;  1WQL A;  1SQX E;  2GBW A;  4HJL A;  4NBG A;  4H13 D;  3D89 A;  2NVE A;  2XR8 A;  5CXM A;  2QJP C;  3H1L E;  1RFS A;  3L73 E;  2HMK A;  4AIV A;  3GOB A;  4HM8 A;  1UUV A;  3VCP A;  4NBC D;  3GL2 A;  4PD4 E;  4NBE D;  1O7W A;  3VMH D;  4AAY B;  1SQQ E;  1JM1 A;  2JZA A;  2FYU E;  1NDO A;  2NVF A;  3EN1 A;  4H44 D;  2HMJ A;  4HM3 A;  2GBX A;  3GKE A;  2NUM A;  4QDC A;  4NB8 A;  4HM4 A;  1Z01 A;  2HML A;  4NBF D;  5AEW A;  1Z03 A;  2NVG A;  4QUQ A;  2B1X A;  1VM9 A;  1O7N A;  2BMQ A;  1ULJ A;  4NBH D;  1ZRT E;  3N0Q A;  3GTS A;  1WW9 A;  3L75 E;  2HMN A;  3VCA A;  2ZYL A;  3C0D A;  1NU1 E;  3GB4 A;  2HMO A;  1VCK A;  2B24 A;  3CX5 E;  2XSH A;  4HM0 A;  1NTZ E;  4NBC A;  2QJY C;  4NBE A;  3AZC A;  3BCC E;  1SQV E;  2YFJ A;  4NBA D;  1O7H A;  2QPZ A;  1NYK A;  3GZY A;  2XSO A;  3GL0 A;  2YIU C;  4NB9 D;  3CXH E;  2I7F A;  1G8K B;  4NBF A;  2NUK A;  2YFL A;  2DE7 D;  2HMM A;  4NBH A;  1PP9 E;  2E75 D;  4OGQ D;  2JO6 A;  2DE5 D;  2E76 D;  1O7M A;  1VF5 D;  5BOK A;  1BE3 E;  4QCK A;  4HM6 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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