5AEU | Genus

Total Genus 139

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	139
sequence length	442
structure length	433
Chain Sequence	NWTPEAIRGLVDQEKGLLDPRIYADQSLYELELERVFGRSWLLLGHESHVPETGDFLATYMGEDPVVMVRQKDKSIKVFLNQCRHRGMRICRSDAGNAKAFTCSYHGWAYDIAGKLVNVPFEKEAFFDKAEWGPLQARVATYKGLVFANWDVQAPDLETYLGDARPYMDVMLDRTPAGTVAIGGMQKWVIPCNWKFAAEQFCSDMYHAGTTTHLSGILAGIPPEMDLSQAQIPTKGNQFRAAWGGHGSGWYVDEPGSLLAVMGPKVTQYWTEGPAAELAEQRLGHTGMPVRRMVGQHMTIFPTCSFLPGINTIRTWHPRGPNEIEVWAFTLVDADAPAEIKEEYRRHNIRNFSAGGVFEQDDGENWVEIQKGLRGYKAKSQPLNAQMGLGRSQTGHPDFPGNVGYVYAEEAARGMYHHWMRMMSEPSWATLKP

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

loadScript /static/js/j2s/core/package.js

loadScript /static/js/j2s/core/corejmol.z.js

loadScript /static/js/j2s/core/corescript.z.js

JSmol exec jmolApplet0 start applet null

Jmol JavaScript applet jmolApplet0__694018036909702__ initializing

Jmol getValue debug null

Jmol getValue logLevel null

Jmol getValue allowjavascript null

AppletRegistry.checkIn(jmolApplet0__694018036909702__)

vwrOptions:

{ "name":"jmolApplet0","applet":true,"documentBase":"https://genus.fuw.edu.pl/view/5AEU/A/","platform":"J.awtjs2d.Platform","fullName":"jmolApplet0__694018036909702__","codePath":"https:/static/js/j2s/","display":"jmolApplet0_canvas2d","signedApplet":"true","appletReadyCallback":"Jmol._readyCallback","statusListener":"[J.appletjs.Jmol object]","syncId":"694018036909702","bgcolor":"white" }

setting document base to "https://genus.fuw.edu.pl/view/5AEU/A/"

Jmol Version: 14.29.13 2018-04-17 17:17

java.vendor: Java2Script (HTML5)

java.version: 2018-01-28 23:38:52 (JSmol/j2s)

os.name: Mozilla/5.0 AppleWebKit/537.36 (KHTML, like Gecko; compatible; ClaudeBot/1.0; +claudebot@anthropic.com)

Access: ALL

memory: 0.0/0.0

processors available: 1

useCommandThread: false

appletId:jmolApplet0 (signed)

Jmol getValue emulate null

defaults = "Jmol"

Jmol getValue boxbgcolor null

Jmol getValue bgcolor white

backgroundColor = "white"

Jmol getValue ANIMFRAMECallback null

Jmol getValue APPLETREADYCallback Jmol._readyCallback

APPLETREADYCallback = "Jmol._readyCallback"

callback set for APPLETREADYCallback Jmol._readyCallback APPLETREADY

Jmol getValue ATOMMOVEDCallback null

Jmol getValue AUDIOCallback null

Jmol getValue CLICKCallback null

Jmol getValue DRAGDROPCallback null

Jmol getValue ECHOCallback null

Jmol getValue ERRORCallback null

Jmol getValue EVALCallback null

Jmol getValue HOVERCallback null

Jmol getValue IMAGECallback null

Jmol getValue LOADSTRUCTCallback null

Jmol getValue MEASURECallback null

Jmol getValue MESSAGECallback null

Jmol getValue MINIMIZATIONCallback null

Jmol getValue SERVICECallback null

Jmol getValue PICKCallback null

Jmol getValue RESIZECallback null

Jmol getValue SCRIPTCallback null

Jmol getValue SYNCCallback null

Jmol getValue STRUCTUREMODIFIEDCallback null

Jmol getValue doTranslate null

language=en_US

Jmol getValue popupMenu null

Jmol getValue script null

Jmol getValue loadInline null

Jmol getValue load null

Jmol applet jmolApplet0__694018036909702__ ready

script 1 started

platformSpeed = 8

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

molecule tags	Oxidoreductase
source organism	Burkholderia xenovorans lb400
publication title	Structural Basis of the Enhanced Pollutant-Degrading Capabilities of an Engineered Biphenyl Dioxygenase pubmed doi rcsb
molecule keywords	BIPHENYL DIOXYGENASE SUBUNIT ALPHA
total genus	139
structure length	433
sequence length	442
chains with identical sequence	C, E, G
ec nomenclature	ec 1.14.12.18: Biphenyl 2,3-dioxygenase.
pdb deposition date	2015-01-10

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00355	Rieske	Rieske [2Fe-2S] domain
A	PF00848	Ring_hydroxyl_A	Ring hydroxylating alpha subunit (catalytic domain)

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.102.10.10	Mainly Beta	3-layer Sandwich	Rieske Iron-sulfur Protein	Rieske [2Fe-2S] iron-sulphur domain	5aeuA02
3.90.380.10	Alpha Beta	Alpha-Beta Complex	Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1	Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1	5aeuA01

1NDOA 2BMRA 3CXHE 1NTME 3H1KE 4U3FE 5CXMA 3L70E 3DQYA 4HM2A 2A06E 5AEWA 3H1LE 1SQVE 4P1BH 4NBCA 1O7MA 4NBBA 2HMLA 2YFIA 3GL2A 3VMID 2D2CD 4NB8D 3L75E 1FQTA 1SQBE 4QUQA 4QDCA 1O7WA 1RIEA 3L71E 4HM6A 2FYNC 1KB9E 2HMJA 3GZXA 3GCFA 3EN1A 3GZYA 3VMHD 4NBFD 1Z01A 3VMGA 1RFSA 2YIUC 2ZYLA 3GB4A 2HMOA 5HL4A 2BMOA 1SQPE 4NB8A 4H44D 4HM0A 4QUPA 4NBHD 2DE5D 4PV1D 2QJPC 3N0QA 1ZRTE 2NWFA 4P1CH 2IBZE 3VMHA 1VM9A 4NBFA 1NTKE 3VMGD 2E76D 3H1JE 3GL0A 4H0LD 4EMJB 2FYUE 2BMQA 2YFLA 5KLVE 5KLIC 4NBGD 4HM4A 4NBHA 2ZT9D 3CWBE 2DE6D 2GBXA 2HMKA 2DE5A 1Q90C 2E74D 2XSOA 1NU1E 1KYOE 2CKFA 2QPZA 2XRXA 1UUVA 2E4QA 4QCKA 1NYKA 2NVGA 1EZVE 2HMNA 1BCCE 2HMMA 1ULJA 2JZAA 2YFJA 3H1IE 2NVEA 4PD4E 4HJLA 4AIVA 4HKVA 4QDDA 4NBGA 3VCAA 5AEUA 2DE6A 4NBDD 4HM3A 1JM1A 1O7GA 2NVFA 2DE7D 3CX5E 2B1XA 3D89A 2GBWA 1L0NE 4NB9D 1VCKA 1G8KB 2E4PA 4QURA 1O7HA 1WW9A 1SQQE 4QDFB 4NBED 2I7FA 1SJGA 2BCCE 2Q3WA 1PP9E 2B24A 5KKZC 4NBDA 1UUWA 1ULIA 2NUKA 1Z02A 1Z03A 2DE7A 4NB9A 3GCEA 3L74E 3TGUE 1EG9A 3GOBA 2E75D 4HM8A 3EQQA 3FOUA 4NBEA 4AAYB 2QJYC 1L0LE 3H1HE 3AZCA 1NTZE 4NBAD 3C0DA 4H13D 1P84E 2XSHA 3VCPA 2QJKC 4HM5A 4HM7A 2JO6A 1WQLA 2YVJB 1O7NA 3GTEA 4QDFA 1PPJE 5BOKA 2NUMA 3GTSA 3L72E 1BE3E 4HM1A 1VF5D 3GKQA 2XR8A 4NBAA 4OGQD 4NBCD 1SQXE 1O7PA 4NBBD 3BCCE 3L73E 3VMIA 3GKEA 1G8JB
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 1NDO A;  2BMR A;  3CXH E;  1NTM E;  3H1K E;  4U3F E;  5CXM A;  3L70 E;  3DQY A;  4HM2 A;  2A06 E;  5AEW A;  3H1L E;  1SQV E;  4P1B H;  4NBC A;  1O7M A;  4NBB A;  2HML A;  2YFI A;  3GL2 A;  3VMI D;  2D2C D;  4NB8 D;  3L75 E;  1FQT A;  1SQB E;  4QUQ A;  4QDC A;  1O7W A;  1RIE A;  3L71 E;  4HM6 A;  2FYN C;  1KB9 E;  2HMJ A;  3GZX A;  3GCF A;  3EN1 A;  3GZY A;  3VMH D;  4NBF D;  1Z01 A;  3VMG A;  1RFS A;  2YIU C;  2ZYL A;  3GB4 A;  2HMO A;  5HL4 A;  2BMO A;  1SQP E;  4NB8 A;  4H44 D;  4HM0 A;  4QUP A;  4NBH D;  2DE5 D;  4PV1 D;  2QJP C;  3N0Q A;  1ZRT E;  2NWF A;  4P1C H;  2IBZ E;  3VMH A;  1VM9 A;  4NBF A;  1NTK E;  3VMG D;  2E76 D;  3H1J E;  3GL0 A;  4H0L D;  4EMJ B;  2FYU E;  2BMQ A;  2YFL A;  5KLV E;  5KLI C;  4NBG D;  4HM4 A;  4NBH A;  2ZT9 D;  3CWB E;  2DE6 D;  2GBX A;  2HMK A;  2DE5 A;  1Q90 C;  2E74 D;  2XSO A;  1NU1 E;  1KYO E;  2CKF A;  2QPZ A;  2XRX A;  1UUV A;  2E4Q A;  4QCK A;  1NYK A;  2NVG A;  1EZV E;  2HMN A;  1BCC E;  2HMM A;  1ULJ A;  2JZA A;  2YFJ A;  3H1I E;  2NVE A;  4PD4 E;  4HJL A;  4AIV A;  4HKV A;  4QDD A;  4NBG A;  3VCA A;  5AEU A;  2DE6 A;  4NBD D;  4HM3 A;  1JM1 A;  1O7G A;  2NVF A;  2DE7 D;  3CX5 E;  2B1X A;  3D89 A;  2GBW A;  1L0N E;  4NB9 D;  1VCK A;  1G8K B;  2E4P A;  4QUR A;  1O7H A;  1WW9 A;  1SQQ E;  4QDF B;  4NBE D;  2I7F A;  1SJG A;  2BCC E;  2Q3W A;  1PP9 E;  2B24 A;  5KKZ C;  4NBD A;  1UUW A;  1ULI A;  2NUK A;  1Z02 A;  1Z03 A;  2DE7 A;  4NB9 A;  3GCE A;  3L74 E;  3TGU E;  1EG9 A;  3GOB A;  2E75 D;  4HM8 A;  3EQQ A;  3FOU A;  4NBE A;  4AAY B;  2QJY C;  1L0L E;  3H1H E;  3AZC A;  1NTZ E;  4NBA D;  3C0D A;  4H13 D;  1P84 E;  2XSH A;  3VCP A;  2QJK C;  4HM5 A;  4HM7 A;  2JO6 A;  1WQL A;  2YVJ B;  1O7N A;  3GTE A;  4QDF A;  1PPJ E;  5BOK A;  2NUM A;  3GTS A;  3L72 E;  1BE3 E;  4HM1 A;  1VF5 D;  3GKQ A;  2XR8 A;  4NBA A;  4OGQ D;  4NBC D;  1SQX E;  1O7P A;  4NBB D;  3BCC E;  3L73 E;  3VMI A;  3GKE A;  1G8J B; 
#chains in the Genus database with same CATH topology
 1NDO A;  2BMR A;  3CXH E;  1NTM E;  3H1K E;  4U3F E;  5CXM A;  3L70 E;  3DQY A;  4HM2 A;  2A06 E;  5AEW A;  3H1L E;  1SQV E;  4P1B H;  4NBC A;  1O7M A;  4NBB A;  2HML A;  2YFI A;  3GL2 A;  3VMI D;  2D2C D;  4NB8 D;  3L75 E;  1FQT A;  1SQB E;  4QUQ A;  4QDC A;  1O7W A;  1RIE A;  3L71 E;  4HM6 A;  2FYN C;  1KB9 E;  2HMJ A;  3GZX A;  3GCF A;  3EN1 A;  3GZY A;  3VMH D;  4NBF D;  1Z01 A;  3VMG A;  1RFS A;  2YIU C;  2ZYL A;  3GB4 A;  2HMO A;  5HL4 A;  2BMO A;  1SQP E;  4NB8 A;  4H44 D;  4HM0 A;  4QUP A;  4NBH D;  2DE5 D;  4PV1 D;  2QJP C;  3N0Q A;  1ZRT E;  2NWF A;  4P1C H;  2IBZ E;  3VMH A;  1VM9 A;  4NBF A;  1NTK E;  3VMG D;  2E76 D;  3H1J E;  3GL0 A;  4H0L D;  4EMJ B;  2FYU E;  2BMQ A;  2YFL A;  5KLV E;  5KLI C;  4NBG D;  4HM4 A;  4NBH A;  2ZT9 D;  3CWB E;  2DE6 D;  2GBX A;  2HMK A;  2DE5 A;  1Q90 C;  2E74 D;  2XSO A;  1NU1 E;  1KYO E;  2CKF A;  2QPZ A;  2XRX A;  1UUV A;  2E4Q A;  4QCK A;  1NYK A;  2NVG A;  1EZV E;  2HMN A;  1BCC E;  2HMM A;  1ULJ A;  2JZA A;  2YFJ A;  3H1I E;  2NVE A;  4PD4 E;  4HJL A;  4AIV A;  4HKV A;  4QDD A;  4NBG A;  3VCA A;  5AEU A;  2DE6 A;  4NBD D;  4HM3 A;  1JM1 A;  1O7G A;  2NVF A;  2DE7 D;  3CX5 E;  2B1X A;  3D89 A;  2GBW A;  1L0N E;  4NB9 D;  1VCK A;  1G8K B;  2E4P A;  4QUR A;  1O7H A;  1WW9 A;  1SQQ E;  4QDF B;  4NBE D;  2I7F A;  1SJG A;  2BCC E;  2Q3W A;  1PP9 E;  2B24 A;  5KKZ C;  4NBD A;  1UUW A;  1ULI A;  2NUK A;  1Z02 A;  1Z03 A;  2DE7 A;  4NB9 A;  3GCE A;  3L74 E;  3TGU E;  1EG9 A;  3GOB A;  2E75 D;  4HM8 A;  3EQQ A;  3FOU A;  4NBE A;  4AAY B;  2QJY C;  1L0L E;  3H1H E;  3AZC A;  1NTZ E;  4NBA D;  3C0D A;  4H13 D;  1P84 E;  2XSH A;  3VCP A;  2QJK C;  4HM5 A;  4HM7 A;  2JO6 A;  1WQL A;  2YVJ B;  1O7N A;  3GTE A;  4QDF A;  1PPJ E;  5BOK A;  2NUM A;  3GTS A;  3L72 E;  1BE3 E;  4HM1 A;  1VF5 D;  3GKQ A;  2XR8 A;  4NBA A;  4OGQ D;  4NBC D;  1SQX E;  1O7P A;  4NBB D;  3BCC E;  3L73 E;  3VMI A;  3GKE A;  1G8J B; 
#chains in the Genus database with same CATH homology
 1NDO A;  2BMR A;  3CXH E;  1NTM E;  3H1K E;  4U3F E;  5CXM A;  3L70 E;  3DQY A;  4HM2 A;  2A06 E;  5AEW A;  3H1L E;  1SQV E;  4P1B H;  4NBC A;  1O7M A;  4NBB A;  2HML A;  2YFI A;  3GL2 A;  3VMI D;  2D2C D;  4NB8 D;  3L75 E;  1FQT A;  1SQB E;  4QUQ A;  4QDC A;  1O7W A;  1RIE A;  3L71 E;  4HM6 A;  2FYN C;  1KB9 E;  2HMJ A;  3GZX A;  3GCF A;  3EN1 A;  3GZY A;  3VMH D;  4NBF D;  1Z01 A;  3VMG A;  1RFS A;  2YIU C;  2ZYL A;  3GB4 A;  2HMO A;  5HL4 A;  2BMO A;  1SQP E;  4NB8 A;  4H44 D;  4HM0 A;  4QUP A;  4NBH D;  2DE5 D;  4PV1 D;  2QJP C;  3N0Q A;  1ZRT E;  2NWF A;  4P1C H;  2IBZ E;  3VMH A;  1VM9 A;  4NBF A;  1NTK E;  3VMG D;  2E76 D;  3H1J E;  3GL0 A;  4H0L D;  4EMJ B;  2FYU E;  2BMQ A;  2YFL A;  5KLV E;  5KLI C;  4NBG D;  4HM4 A;  4NBH A;  2ZT9 D;  3CWB E;  2DE6 D;  2GBX A;  2HMK A;  2DE5 A;  1Q90 C;  2E74 D;  2XSO A;  1NU1 E;  1KYO E;  2CKF A;  2QPZ A;  2XRX A;  1UUV A;  2E4Q A;  4QCK A;  1NYK A;  2NVG A;  1EZV E;  2HMN A;  1BCC E;  2HMM A;  1ULJ A;  2JZA A;  2YFJ A;  3H1I E;  2NVE A;  4PD4 E;  4HJL A;  4AIV A;  4HKV A;  4QDD A;  4NBG A;  3VCA A;  5AEU A;  2DE6 A;  4NBD D;  4HM3 A;  1JM1 A;  1O7G A;  2NVF A;  2DE7 D;  3CX5 E;  2B1X A;  3D89 A;  2GBW A;  1L0N E;  4NB9 D;  1VCK A;  1G8K B;  2E4P A;  4QUR A;  1O7H A;  1WW9 A;  1SQQ E;  4QDF B;  4NBE D;  2I7F A;  1SJG A;  2BCC E;  2Q3W A;  1PP9 E;  2B24 A;  5KKZ C;  4NBD A;  1UUW A;  1ULI A;  2NUK A;  1Z02 A;  1Z03 A;  2DE7 A;  4NB9 A;  3GCE A;  3L74 E;  3TGU E;  1EG9 A;  3GOB A;  2E75 D;  4HM8 A;  3EQQ A;  3FOU A;  4NBE A;  4AAY B;  2QJY C;  1L0L E;  3H1H E;  3AZC A;  1NTZ E;  4NBA D;  3C0D A;  4H13 D;  1P84 E;  2XSH A;  3VCP A;  2QJK C;  4HM5 A;  4HM7 A;  2JO6 A;  1WQL A;  2YVJ B;  1O7N A;  3GTE A;  4QDF A;  1PPJ E;  5BOK A;  2NUM A;  3GTS A;  3L72 E;  1BE3 E;  4HM1 A;  1VF5 D;  3GKQ A;  2XR8 A;  4NBA A;  4OGQ D;  4NBC D;  1SQX E;  1O7P A;  4NBB D;  3BCC E;  3L73 E;  3VMI A;  3GKE A;  1G8J B;

...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)

...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

5AEUA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

pfam database annotations