The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
139
|
sequence length |
442
|
structure length |
433
|
Chain Sequence |
NWTPEAIRGLVDQEKGLLDPRIYADQSLYELELERVFGRSWLLLGHESHVPETGDFLATYMGEDPVVMVRQKDKSIKVFLNQCRHRGMRICRSDAGNAKAFTCSYHGWAYDIAGKLVNVPFEKEAFFDKAEWGPLQARVATYKGLVFANWDVQAPDLETYLGDARPYMDVMLDRTPAGTVAIGGMQKWVIPCNWKFAAEQFCSDMYHAGTTTHLSGILAGIPPEMDLSQAQIPTKGNQFRAAWGGHGSGWYVDEPGSLLAVMGPKVTQYWTEGPAAELAEQRLGHTGMPVRRMVGQHMTIFPTCSFLPGINTIRTWHPRGPNEIEVWAFTLVDADAPAEIKEEYRRHNIRNFSAGGVFEQDDGENWVEIQKGLRGYKAKSQPLNAQMGLGRSQTGHPDFPGNVGYVYAEEAARGMYHHWMRMMSEPSWATLKP
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Structural Basis of the Enhanced Pollutant-Degrading Capabilities of an Engineered Biphenyl Dioxygenase
pubmed doi rcsb |
| molecule tags |
Oxidoreductase
|
| source organism |
Burkholderia xenovorans lb400
|
| molecule keywords |
BIPHENYL DIOXYGENASE SUBUNIT ALPHA
|
| total genus |
139
|
| structure length |
433
|
| sequence length |
442
|
| chains with identical sequence |
C, E, G
|
| ec nomenclature |
ec
1.14.12.18: Biphenyl 2,3-dioxygenase. |
| pdb deposition date | 2015-01-10 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF00355 | Rieske | Rieske [2Fe-2S] domain |
| A | PF00848 | Ring_hydroxyl_A | Ring hydroxylating alpha subunit (catalytic domain) |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | 3-layer Sandwich | Rieske Iron-sulfur Protein | Rieske [2Fe-2S] iron-sulphur domain | ||
| Alpha Beta | Alpha-Beta Complex | Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 | Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 |
#chains in the Genus database with same CATH superfamily 4HM5 A; 3H1I E; 4NBB D; 5AEU A; 1P84 E; 1BE3 E; 2YVJ B; 2BMO A; 2DE7 D; 2QJP C; 3DQY A; 3H1K E; 2YFI A; 2IBZ E; 4HM0 A; 2BMR A; 1G8J B; 2NVF A; 4NBD D; 3H1L E; 3CWB E; 3GCF A; 3D89 A; 1ULJ A; 4AAY B; 2CKF A; 4NBC A; 1Z01 A; 1BCC E; 1KB9 E; 2JO6 A; 1NTZ E; 4U3F E; 5KKZ C; 4NBG D; 1ULI A; 1O7W A; 1UUW A; 4NB8 A; 1NDO A; 3GL0 A; 3H1J E; 3VMI D; 4H13 D; 3GL2 A; 3FOU A; 1NU1 E; 3H1H E; 4NBA D; 2B24 A; 4QCK A; 4EMJ B; 4NB9 A; 2QPZ A; 3L71 E; 2FYU E; 4NB8 D; 4HM8 A; 4QDF A; 2HML A; 4H44 D; 1VM9 A; 3VMG A; 1NYK A; 1EZV E; 1SQP E; 2E76 D; 2HMM A; 4NB9 D; 4NBH A; 1PP9 E; 2HMO A; 1Z03 A; 2ZT9 D; 5KLI C; 1JM1 A; 1RFS A; 3L73 E; 4PV1 D; 2HMJ A; 3VCP A; 1SQB E; 4QDC A; 4NBF A; 4NBE A; 2BCC E; 1SQV E; 3VMH A; 3AZC A; 4NBH D; 3GKQ A; 3GZY A; 1SQQ E; 2XRX A; 3GTS A; 3GZX A; 3GCE A; 2E4P A; 1G8K B; 4HM2 A; 4NBC D; 4OGQ D; 3GOB A; 1PPJ E; 2XR8 A; 5KLV E; 2NWF A; 1NTK E; 2NUM A; 4NBE D; 3BCC E; 3L72 E; 1Q90 C; 2B1X A; 2YIU C; 2Q3W A; 4HKV A; 4P1B H; 2E74 D; 2GBX A; 2YFJ A; 3C0D A; 1VF5 D; 1SQX E; 4QUQ A; 1FQT A; 2HMN A; 2DE5 A; 5AEW A; 3GTE A; 2JZA A; 4HM6 A; 4QDD A; 1O7M A; 2A06 E; 4NBB A; 1WW9 A; 4HJL A; 3VMG D; 2NVE A; 2DE6 A; 1O7P A; 2DE7 A; 4QUP A; 2XSO A; 3L74 E; 1O7H A; 1EG9 A; 2NVG A; 4HM4 A; 1UUV A; 4HM3 A; 1WQL A; 3GB4 A; 5BOK A; 2DE6 D; 4NBF D; 1L0L E; 3N0Q A; 4NBG A; 1RIE A; 5CXM A; 4QUR A; 4H0L D; 3VMH D; 4PD4 E; 2E4Q A; 2HMK A; 4QDF B; 3TGU E; 2D2C D; 3VMI A; 2GBW A; 5HL4 A; 3CX5 E; 1KYO E; 3EQQ A; 4NBA A; 3L75 E; 3EN1 A; 4AIV A; 3GKE A; 2E75 D; 3CXH E; 3L70 E; 2ZYL A; 1NTM E; 4P1C H; 3VCA A; 1O7N A; 2NUK A; 2YFL A; 4HM7 A; 2BMQ A; 4HM1 A; 1L0N E; 2QJY C; 1SJG A; 2I7F A; 2DE5 D; 2QJK C; 1Z02 A; 1O7G A; 2XSH A; 2FYN C; 4NBD A; 1ZRT E; 1VCK A; #chains in the Genus database with same CATH topology 4HM5 A; 3H1I E; 4NBB D; 5AEU A; 1P84 E; 1BE3 E; 2YVJ B; 2BMO A; 2DE7 D; 2QJP C; 3DQY A; 3H1K E; 2YFI A; 2IBZ E; 4HM0 A; 2BMR A; 1G8J B; 2NVF A; 4NBD D; 3H1L E; 3CWB E; 3GCF A; 3D89 A; 1ULJ A; 4AAY B; 2CKF A; 4NBC A; 1Z01 A; 1BCC E; 1KB9 E; 2JO6 A; 1NTZ E; 4U3F E; 5KKZ C; 4NBG D; 1ULI A; 1O7W A; 1UUW A; 4NB8 A; 1NDO A; 3GL0 A; 3H1J E; 3VMI D; 4H13 D; 3GL2 A; 3FOU A; 1NU1 E; 3H1H E; 4NBA D; 2B24 A; 4QCK A; 4EMJ B; 4NB9 A; 2QPZ A; 3L71 E; 2FYU E; 4NB8 D; 4HM8 A; 4QDF A; 2HML A; 4H44 D; 1VM9 A; 3VMG A; 1NYK A; 1EZV E; 1SQP E; 2E76 D; 2HMM A; 4NB9 D; 4NBH A; 1PP9 E; 2HMO A; 1Z03 A; 2ZT9 D; 5KLI C; 1JM1 A; 1RFS A; 3L73 E; 4PV1 D; 2HMJ A; 3VCP A; 1SQB E; 4QDC A; 4NBF A; 4NBE A; 2BCC E; 1SQV E; 3VMH A; 3AZC A; 4NBH D; 3GKQ A; 3GZY A; 1SQQ E; 2XRX A; 3GTS A; 3GZX A; 3GCE A; 2E4P A; 1G8K B; 4HM2 A; 4NBC D; 4OGQ D; 3GOB A; 1PPJ E; 2XR8 A; 5KLV E; 2NWF A; 1NTK E; 2NUM A; 4NBE D; 3BCC E; 3L72 E; 1Q90 C; 2B1X A; 2YIU C; 2Q3W A; 4HKV A; 4P1B H; 2E74 D; 2GBX A; 2YFJ A; 3C0D A; 1VF5 D; 1SQX E; 4QUQ A; 1FQT A; 2HMN A; 2DE5 A; 5AEW A; 3GTE A; 2JZA A; 4HM6 A; 4QDD A; 1O7M A; 2A06 E; 4NBB A; 1WW9 A; 4HJL A; 3VMG D; 2NVE A; 2DE6 A; 1O7P A; 2DE7 A; 4QUP A; 2XSO A; 3L74 E; 1O7H A; 1EG9 A; 2NVG A; 4HM4 A; 1UUV A; 4HM3 A; 1WQL A; 3GB4 A; 5BOK A; 2DE6 D; 4NBF D; 1L0L E; 3N0Q A; 4NBG A; 1RIE A; 5CXM A; 4QUR A; 4H0L D; 3VMH D; 4PD4 E; 2E4Q A; 2HMK A; 4QDF B; 3TGU E; 2D2C D; 3VMI A; 2GBW A; 5HL4 A; 3CX5 E; 1KYO E; 3EQQ A; 4NBA A; 3L75 E; 3EN1 A; 4AIV A; 3GKE A; 2E75 D; 3CXH E; 3L70 E; 2ZYL A; 1NTM E; 4P1C H; 3VCA A; 1O7N A; 2NUK A; 2YFL A; 4HM7 A; 2BMQ A; 4HM1 A; 1L0N E; 2QJY C; 1SJG A; 2I7F A; 2DE5 D; 2QJK C; 1Z02 A; 1O7G A; 2XSH A; 2FYN C; 4NBD A; 1ZRT E; 1VCK A; #chains in the Genus database with same CATH homology 4HM5 A; 3H1I E; 4NBB D; 5AEU A; 1P84 E; 1BE3 E; 2YVJ B; 2BMO A; 2DE7 D; 2QJP C; 3DQY A; 3H1K E; 2YFI A; 2IBZ E; 4HM0 A; 2BMR A; 1G8J B; 2NVF A; 4NBD D; 3H1L E; 3CWB E; 3GCF A; 3D89 A; 1ULJ A; 4AAY B; 2CKF A; 4NBC A; 1Z01 A; 1BCC E; 1KB9 E; 2JO6 A; 1NTZ E; 4U3F E; 5KKZ C; 4NBG D; 1ULI A; 1O7W A; 1UUW A; 4NB8 A; 1NDO A; 3GL0 A; 3H1J E; 3VMI D; 4H13 D; 3GL2 A; 3FOU A; 1NU1 E; 3H1H E; 4NBA D; 2B24 A; 4QCK A; 4EMJ B; 4NB9 A; 2QPZ A; 3L71 E; 2FYU E; 4NB8 D; 4HM8 A; 4QDF A; 2HML A; 4H44 D; 1VM9 A; 3VMG A; 1NYK A; 1EZV E; 1SQP E; 2E76 D; 2HMM A; 4NB9 D; 4NBH A; 1PP9 E; 2HMO A; 1Z03 A; 2ZT9 D; 5KLI C; 1JM1 A; 1RFS A; 3L73 E; 4PV1 D; 2HMJ A; 3VCP A; 1SQB E; 4QDC A; 4NBF A; 4NBE A; 2BCC E; 1SQV E; 3VMH A; 3AZC A; 4NBH D; 3GKQ A; 3GZY A; 1SQQ E; 2XRX A; 3GTS A; 3GZX A; 3GCE A; 2E4P A; 1G8K B; 4HM2 A; 4NBC D; 4OGQ D; 3GOB A; 1PPJ E; 2XR8 A; 5KLV E; 2NWF A; 1NTK E; 2NUM A; 4NBE D; 3BCC E; 3L72 E; 1Q90 C; 2B1X A; 2YIU C; 2Q3W A; 4HKV A; 4P1B H; 2E74 D; 2GBX A; 2YFJ A; 3C0D A; 1VF5 D; 1SQX E; 4QUQ A; 1FQT A; 2HMN A; 2DE5 A; 5AEW A; 3GTE A; 2JZA A; 4HM6 A; 4QDD A; 1O7M A; 2A06 E; 4NBB A; 1WW9 A; 4HJL A; 3VMG D; 2NVE A; 2DE6 A; 1O7P A; 2DE7 A; 4QUP A; 2XSO A; 3L74 E; 1O7H A; 1EG9 A; 2NVG A; 4HM4 A; 1UUV A; 4HM3 A; 1WQL A; 3GB4 A; 5BOK A; 2DE6 D; 4NBF D; 1L0L E; 3N0Q A; 4NBG A; 1RIE A; 5CXM A; 4QUR A; 4H0L D; 3VMH D; 4PD4 E; 2E4Q A; 2HMK A; 4QDF B; 3TGU E; 2D2C D; 3VMI A; 2GBW A; 5HL4 A; 3CX5 E; 1KYO E; 3EQQ A; 4NBA A; 3L75 E; 3EN1 A; 4AIV A; 3GKE A; 2E75 D; 3CXH E; 3L70 E; 2ZYL A; 1NTM E; 4P1C H; 3VCA A; 1O7N A; 2NUK A; 2YFL A; 4HM7 A; 2BMQ A; 4HM1 A; 1L0N E; 2QJY C; 1SJG A; 2I7F A; 2DE5 D; 2QJK C; 1Z02 A; 1O7G A; 2XSH A; 2FYN C; 4NBD A; 1ZRT E; 1VCK A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
