2B3WA

Nmr structure of the e.coli protein ybia, northeast structural genomics target et24.
Total Genus 48

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
48
sequence length
168
structure length
168
Chain Sequence
MPVRAQRIQHVMQDTIINFYSTSDDYGDFSNFAAWPIKVDGKTWPTSEHYFQAQKFLDEKYREEIRRVSSPMVAARMGRDRSKPLRKNWESVKEQVMRKALRAKFEQHAELRALLLATAPAKLVEHTENDAYWGDGGHGKGKNRLGYLLMELREQLAIEKLEHHHHHH

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
TIV1 (4-7)TIV2 (8-11)TI2 (24-27)S1 (15-19)TIV3 (12-15)TIV6 (118-121)EMPTYTI1 (21-24)TI5 (27-30)AH4 (88-107)TI3 (25-28)TI6 (30-33)S4 (121-125)AH1 (47-55)TVIII2 (28-31)O2 (33-35)TIV4 (38-41)AH2 (59-67)TIV5 (80-83)AH3 (71-78)AH5 (109-118)AH6 (143-161)TIV7 (127-130)TIV8 (131-134)TI7 (136-139)TIV9 (132-135)O3 (165-167)S2 (37-39)S3 (42-44)Updating...
connected with : NaN
molecule tags Structural genomics, unknown function
source organism Escherichia coli
publication title NMR structure of the E.coli protein YbiA, Northeast Structural Genomics target ET24.
rcsb
molecule keywords Hypothetical protein ybiA
total genus 48
structure length 168
sequence length 168
ec nomenclature
pdb deposition date 2005-09-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF08719 DUF1768 Domain of unknown function (DUF1768)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.357.40 Mainly Alpha Orthogonal Bundle Tetracycline Repressor; domain 2 Tetracycline Repressor; domain 2 2b3wA00
2B3WA
chains in the Genus database with same CATH superfamily
3GEUA 3HE0A 2FQ4A 3VIBA 4V2GA 3BTCA 3B6CA 3BR0A 3G1MA 5EFYA 2ZCNA 3ZQGA 3E7QA 3BHQA 3FRQA 5F0HA 4I6ZA 3ZQLA 2FX0A 2G3BA 2XGCA 2OF7A 2UXOA 4KWAA 2GUHA 2ZCMA 5CQGA 1JTXA 2QWTA 3EUPA 3VTIA 4MO7A 3C07A 2JK3A 5EYRA 2FD5A 2QIBA 3TP3A 3FHNA 1A6IA 3T6NA 4D5FA 2UXPA 4GCKA 1VI0A 3WHBA 3ZQHA 2VPRA 3ZQFA 3VPRA 2R7RA 3TP0A 4HKUA 3G1LA 2DG8A 3PPBA 3BQZA 3GZIA 4M3EA 3HTIA 1JUMA 4AC0A 2IAIA 5D18A 3KKDA 2ZOZA 3O8HA 3RH2A 5GP9A 5J3LA 2XDNA 2B3WA 2XPUA 2Q24A 4ACIA 4CGRA 1UI5A 2PZ9A 5K58A 1Z77A 1ZKGA 1QVTA 5IP6A 3O60A 3HTHA 4L62A 4WIBA 3BNIA 2IBDA 2YVXA 4W97A 5D1RA 3CJDA 2PFVA 2ID6A 4IRVA 2R7UA 2RASA 4B3AA 2HQ5A 3LOCA 1UI6A 1QVUA 1ORKA 2GFNA 2XPVA 2OERA 2YVEA 4D7MA 3S5RA 3BR2A 2NS8A 3COLA 2REKA 2X9DA 4I76A 3VW0A 3LHQA 4OD5A 3LSRA 5AQCA 5F08A 3HIMA 2XPWA 1U9OA 4AC6A 5K7FA 3QPLA 4UDSA 2R7VA 2HYJA 3DPJA 5CXIA 1U9NA 2G7LA 1QPIA 3BR3A 2D6YA 2ZY9A 3VVZA 2Y31A 2NS7A 3SWHA 4OD4A 4X1EA 3G7RA 3G56A 2WV1A 3VOKA 3HTAA 3PASA 3VUQA 5GPAA 5FKNA 2R7TA 2NP3A 3P9TA 2DG7A 3HTJA 3BR1A 5IPAA 3BTIA 1RPWA 2Y2ZA 2G0EA 4GCLA 4M3BA 5DAJA 4AF5A 3V6GA 3BRUA 5IOZA 4NELA 4ABZA 3EGQA 2XGEA 3K8PC 2I10A 3KYLA 4PXIA 3CRJA 5FGLA 4B1RA 4M3GA 3Q0UA 3KZ9A 3IH4A 4JYKA 5K7HA 2OPTA 2B1EA 3VW1A 2R7QA 2ZCXA 3KNWA 2R7WA 4GFLA 2ZB9A 3BQYA 3VVYA 5IOYA 2QKOA 3KKCA 2UXUA 2O7TA 2FBQA 2Y30A 1ZK8A 3ON2A 3NNRA 4XK4A 3DEWA 3CWRA 4U9NA 4D5CA 5EZGA 3AQSA 5EZHA 1JUSA 3Q3SA 5J1YA 3FK7A 3IH3A 5HBUA 3IUVA 3ON4A 4D7NA 2G7GA 3CDLA 4JKZA 2NP5A 3BJBA 1Z0XA 3Q0WA 3PM1A 2UXHA 3QQAA 2XRLA 3FIWA 3HGGA 3ANGA 3CCYA 3NPIA 4JL3A 2VKEA 3VVXA 2XB5A 1RKTA 4NN1A 2O7OA 5J1RA 3BCGA 3LSPA 3SFIA 2OI8A 3QKXA 3NXCA 5D19A 1JUPA 3HGYA 4JNNA 5K7ZA 2RHAA 1T56A 3C2BA 2NX4A 4DW6A 3MVPA 2PBXA 3JSJA 4MK6A 5F1JA 3DU6A 3LSJA 2XGDA 5FHPA 2IU5A 4YZEA 3NI7A 3Q0VA 1JT0A 4GFKA 4W1UA 4GCTA 5F0CA 3RD3A 5FKLA 2YVHA 3V78A 3ZQIA 2R7OA 4MXMA 3AQTA 1RKWA 2VKVA 2R7XA 2HKUA 1JTYA 4AUXA 2IEKA 3MNLA 2WUIA 4V2FA 5F0FA 3QBMA 5HSZA 3LWJA 2W53A 3BR5A 2F07A 5GPCA 2QCOA 5J1UA 5HAWA 5F04A 1JT6A 2DTZA 2UXIA 3B6AA 2JJ7A 3ANPA 5F27A 5FKKA 3IH2A 2GBYA 1BJZA 3FK6A 5C4YA 3VW2A 4ME9A 2A2FX 4DVYP 3F1BA 3QPSA 5CW8A 2GENA 5FMPA 5H9TA 3O8GA 2G7SA 4M3DA 2HXIA 3BTJA 4M3FA 3BR6A 5FKOA 2ZOYA 2QOPA 2HYTA 2R7SA 5CXGA 2V57A 2X6OA 2RAEA 1SGMA 3G1OA 4G12A 3F0CA 4ICHA 2TCTA 2TRTA 3BT9A 2QTQA 2WGBA 4C2MA 2FJ1A 2EH3A 3DU5A 3SDGA 3NRGA 3WHCA 1T33A 3BTLA 3B81A 4U9LA 2ID3A 3VOXA 2FJI1 3LJLA 3DCFA 2HXOA 3VP5A 5FKMA 3NS4A
chains in the Genus database with same CATH topology
2R7XA 3VTIA 4C2MA 3DU6A 2B1EA 2R7QA 3K8PC 3FHNA 3SWHA 3DU5A 4OD4A 2PFVA 4IRVA 2A2FX 4DVYP 4OD5A 3KYLA 2R7UA 2B3WA 2R7WA 2R7OA 2R7SA 2R7RA 2FJI1 2R7TA 2R7VA 3NS4A 5CQGA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2B3W A; 
#chains in the Genus database with same CATH topology
 3GEU A;  3HE0 A;  2FQ4 A;  3VIB A;  4V2G A;  3BTC A;  3B6C A;  3BR0 A;  3G1M A;  5EFY A;  2ZCN A;  3ZQG A;  3E7Q A;  3BHQ A;  3FRQ A;  5F0H A;  4I6Z A;  3ZQL A;  2FX0 A;  2G3B A;  2XGC A;  2OF7 A;  2UXO A;  4KWA A;  2GUH A;  2ZCM A;  5CQG A;  1JTX A;  2QWT A;  3EUP A;  3VTI A;  4MO7 A;  3C07 A;  2JK3 A;  5EYR A;  2FD5 A;  2QIB A;  3TP3 A;  3FHN A;  1A6I A;  3T6N A;  4D5F A;  2UXP A;  4GCK A;  1VI0 A;  3WHB A;  3ZQH A;  2VPR A;  3ZQF A;  3VPR A;  2R7R A;  3TP0 A;  4HKU A;  3G1L A;  2DG8 A;  3PPB A;  3BQZ A;  3GZI A;  4M3E A;  3HTI A;  1JUM A;  4AC0 A;  2IAI A;  5D18 A;  3KKD A;  2ZOZ A;  3O8H A;  3RH2 A;  5GP9 A;  5J3L A;  2XDN A;  2B3W A;  2XPU A;  2Q24 A;  4ACI A;  4CGR A;  1UI5 A;  2PZ9 A;  5K58 A;  1Z77 A;  1ZKG A;  1QVT A;  5IP6 A;  3O60 A;  3HTH A;  4L62 A;  4WIB A;  3BNI A;  2IBD A;  2YVX A;  4W97 A;  5D1R A;  3CJD A;  2PFV A;  2ID6 A;  4IRV A;  2R7U A;  2RAS A;  4B3A A;  2HQ5 A;  3LOC A;  1UI6 A;  1QVU A;  1ORK A;  2GFN A;  2XPV A;  2OER A;  2YVE A;  4D7M A;  3S5R A;  3BR2 A;  2NS8 A;  3COL A;  2REK A;  2X9D A;  4I76 A;  3VW0 A;  3LHQ A;  4OD5 A;  3LSR A;  5AQC A;  5F08 A;  3HIM A;  2XPW A;  1U9O A;  4AC6 A;  5K7F A;  3QPL A;  4UDS A;  2R7V A;  2HYJ A;  3DPJ A;  5CXI A;  1U9N A;  2G7L A;  1QPI A;  3BR3 A;  2D6Y A;  2ZY9 A;  3VVZ A;  2Y31 A;  2NS7 A;  3SWH A;  4OD4 A;  4X1E A;  3G7R A;  3G56 A;  2WV1 A;  3VOK A;  3HTA A;  3PAS A;  3VUQ A;  5GPA A;  5FKN A;  2R7T A;  2NP3 A;  3P9T A;  2DG7 A;  3HTJ A;  3BR1 A;  5IPA A;  3BTI A;  1RPW A;  2Y2Z A;  2G0E A;  4GCL A;  4M3B A;  5DAJ A;  4AF5 A;  3V6G A;  3BRU A;  5IOZ A;  4NEL A;  4ABZ A;  3EGQ A;  2XGE A;  3K8P C;  2I10 A;  3KYL A;  4PXI A;  3CRJ A;  5FGL A;  4B1R A;  4M3G A;  3Q0U A;  3KZ9 A;  3IH4 A;  4JYK A;  5K7H A;  2OPT A;  2B1E A;  3VW1 A;  2R7Q A;  2ZCX A;  3KNW A;  2R7W A;  4GFL A;  2ZB9 A;  3BQY A;  3VVY A;  5IOY A;  2QKO A;  3KKC A;  2UXU A;  2O7T A;  2FBQ A;  2Y30 A;  1ZK8 A;  3ON2 A;  3NNR A;  4XK4 A;  3DEW A;  3CWR A;  4U9N A;  4D5C A;  5EZG A;  3AQS A;  5EZH A;  1JUS A;  3Q3S A;  5J1Y A;  3FK7 A;  3IH3 A;  5HBU A;  3IUV A;  3ON4 A;  4D7N A;  2G7G A;  3CDL A;  4JKZ A;  2NP5 A;  3BJB A;  1Z0X A;  3Q0W A;  3PM1 A;  2UXH A;  3QQA A;  2XRL A;  3FIW A;  3HGG A;  3ANG A;  3CCY A;  3NPI A;  4JL3 A;  2VKE A;  3VVX A;  2XB5 A;  1RKT A;  4NN1 A;  2O7O A;  5J1R A;  3BCG A;  3LSP A;  3SFI A;  2OI8 A;  3QKX A;  3NXC A;  5D19 A;  1JUP A;  3HGY A;  4JNN A;  5K7Z A;  2RHA A;  1T56 A;  3C2B A;  2NX4 A;  4DW6 A;  3MVP A;  2PBX A;  3JSJ A;  4MK6 A;  5F1J A;  3DU6 A;  3LSJ A;  2XGD A;  5FHP A;  2IU5 A;  4YZE A;  3NI7 A;  3Q0V A;  1JT0 A;  4GFK A;  4W1U A;  4GCT A;  5F0C A;  3RD3 A;  5FKL A;  2YVH A;  3V78 A;  3ZQI A;  2R7O A;  4MXM A;  3AQT A;  1RKW A;  2VKV A;  2R7X A;  2HKU A;  1JTY A;  4AUX A;  2IEK A;  3MNL A;  2WUI A;  4V2F A;  5F0F A;  3QBM A;  5HSZ A;  3LWJ A;  2W53 A;  3BR5 A;  2F07 A;  5GPC A;  2QCO A;  5J1U A;  5HAW A;  5F04 A;  1JT6 A;  2DTZ A;  2UXI A;  3B6A A;  2JJ7 A;  3ANP A;  5F27 A;  5FKK A;  3IH2 A;  2GBY A;  1BJZ A;  3FK6 A;  5C4Y A;  3VW2 A;  4ME9 A;  2A2F X;  4DVY P;  3F1B A;  3QPS A;  5CW8 A;  2GEN A;  5FMP A;  5H9T A;  3O8G A;  2G7S A;  4M3D A;  2HXI A;  3BTJ A;  4M3F A;  3BR6 A;  5FKO A;  2ZOY A;  2QOP A;  2HYT A;  2R7S A;  5CXG A;  2V57 A;  2X6O A;  2RAE A;  1SGM A;  3G1O A;  4G12 A;  3F0C A;  4ICH A;  2TCT A;  2TRT A;  3BT9 A;  2QTQ A;  2WGB A;  4C2M A;  2FJ1 A;  2EH3 A;  3DU5 A;  3SDG A;  3NRG A;  3WHC A;  1T33 A;  3BTL A;  3B81 A;  4U9L A;  2ID3 A;  3VOX A;  2FJI 1;  3LJL A;  3DCF A;  2HXO A;  3VP5 A;  5FKM A;  3NS4 A; 
#chains in the Genus database with same CATH homology
 2R7X A;  3VTI A;  4C2M A;  3DU6 A;  2B1E A;  2R7Q A;  3K8P C;  3FHN A;  3SWH A;  3DU5 A;  4OD4 A;  2PFV A;  4IRV A;  2A2F X;  4DVY P;  4OD5 A;  3KYL A;  2R7U A;  2B3W A;  2R7W A;  2R7O A;  2R7S A;  2R7R A;  2FJI 1;  2R7T A;  2R7V A;  3NS4 A;  5CQG A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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