4IRVA

Structure of the helicobacter pylori caga oncogene bound to the human tumor suppressor apoptosis-stimulating protein of p53-2
Total Genus 76
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
76
sequence length
198
structure length
197
Chain Sequence
QQFINNLQVAFIKVDNVVASFDPDQKPIVDKNDRDNRQAFDGISQLREEYSNKAIKNPTKKNQYFSDFIDKSNDLINKDNLIDVESSTKSFQKFGDQRYQIFTSWVSHQKDPSKINTRSIRNFMENIIQPPIPDDKEKAEFLKSAKQSFAGIIIGNQIRTDQKFMGVFDESLKERQEAEKGGPTGGDWLDIFLSFIF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Cytotoxicity-associated immunodominant antigen
publication title Structure of the Helicobacter pylori CagA oncoprotein bound to the human tumor suppressor ASPP2.
pubmed doi rcsb
source organism Helicobacter pylori
molecule tags Protein binding
total genus 76
structure length 197
sequence length 198
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2013-01-15
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.357.130 Mainly Alpha Orthogonal Bundle Tetracycline Repressor; domain 2 Tetracycline Repressor; domain 2 4irvA00
4DVYP 4IRVA
chains in the Genus database with same CATH superfamily
2ZCMA 1ZK8A 2I10A 2WGBA 4U9NA 2VPRA 5F0FA 3ON2A 3BR0A 2Q24A 4W97A 2G3BA 3VVZA 3CJDA 2G7LA 3O8HA 3DEWA 2GBYA 5CXGA 4B1RA 1VI0A 5J1YA 4X1EA 1JUPA 5F08A 3C07A 4M3EA 2JJ7A 2R7OA 3ON4A 3LSRA 3PPBA 2W53A 2R7RA 2Y31A 3IH4A 2IU5A 3LOCA 2FX0A 5HSZA 1Z0XA 3KKCA 3O60A 2R7UA 2NS8A 5J1RA 4GCLA 3DPJA 2OI8A 2NP5A 5CW8A 3RH2A 4MO7A 2QWTA 3HGGA 3LWJA 4MXMA 4JL3A 2QCOA 5FKKA 3KYLA 2GUHA 2FBQA 3BTJA 3NNRA 2UXIA 3VW1A 3BTLA 4AUXA 2XGEA 2UXPA 3NI7A 5IPAA 5CXIA 5GP9A 3BR3A 1JTYA 2ZOYA 2A2FX 2O7TA 3HE0A 3VW2A 4M3GA 2GFNA 3Q0UA 4KWAA 5D19A 2TRTA 2QKOA 3QPSA 3BT9A 4HKUA 4D5CA 2X9DA 3FK7A 3F1BA 5J3LA 2ZCNA 2DG7A 4MK6A 3LHQA 3FK6A 2FJ1A 4GCKA 2EH3A 1U9OA 3T6NA 2ID6A 4PXIA 2QIBA 3CDLA 5IOZA 3VTIA 3WHBA 4DW6A 1U9NA 3C2BA 4I76A 2YVHA 5K7FA 3PASA 1QPIA 4AC0A 3K8PC 1SGMA 2G7SA 1UI6A 4GFLA 1RPWA 3BR1A 1T56A 3ANPA 2XGCA 4V2FA 3BTIA 3ZQIA 5HBUA 1RKWA 3V78A 3BR5A 2YVEA 3BCGA 5F0HA 4I6ZA 5D18A 3QKXA 3TP3A 2R7TA 2TCTA 1T33A 2XPVA 2FJI1 2RAEA 2Y2ZA 3CRJA 2IAIA 2IEKA 2NS7A 2F07A 5H9TA 3KKDA 4UDSA 2UXOA 3HTIA 2R7XA 3COLA 1JTXA 2ZB9A 4IRVA 2REKA 3B6CA 2ZCXA 2UXHA 2VKEA 3BNIA 3HTHA 5IOYA 2HQ5A 5EZGA 2ZOZA 2PZ9A 5K7ZA 4OD4A 4XK4A 1ORKA 2O7OA 3VP5A 3NPIA 3E7QA 4ME9A 2R7SA 3BQZA 2DTZA 4GCTA 3VOXA 2HKUA 3BRUA 2FD5A 2QOPA 3HTAA 2PBXA 2UXUA 3G1LA 4JKZA 4GFKA 5DAJA 5FHPA 3SWHA 3IUVA 2JK3A 3FIWA 3VIBA 3G7RA 4JNNA 5EZHA 2XRLA 3LSPA 3PM1A 3VVYA 2Y30A 4ABZA 3HGYA 4AC6A 5HAWA 3Q0WA 3HIMA 5FKMA 4CGRA 5F1JA 3ZQFA 3IH2A 5CQGA 5C4YA 4DVYP 3DU5A 3QPLA 3NS4A 3MVPA 2OPTA 2HXIA 1JUMA 1Z77A 3Q3SA 3RD3A 3S5RA 1QVUA 5F0CA 3FHNA 3KNWA 3ZQLA 2OF7A 5FKNA 4YZEA 2ZY9A 2PFVA 3VUQA 5AQCA 2NP3A 3F0CA 3SDGA 2G7GA 3BJBA 3NRGA 5FMPA 3B6AA 4W1UA 2XPWA 3BQYA 3WHCA 2B3WA 3G56A 3B81A 2DG8A 2WV1A 1UI5A 2XGDA 4NN1A 4V2GA 3HTJA 2GENA 3VOKA 1JT0A 2R7WA 2ID3A 3TP0A 1JT6A 2QTQA 3DCFA 2B1EA 3Q0VA 3EGQA 1BJZA 3JSJA 4ACIA 3BR6A 3QBMA 3CWRA 4B3AA 5F27A 2HXOA 3AQTA 2WUIA 1ZKGA 2XB5A 1A6IA 4L62A 2IBDA 3NXCA 2R7VA 3FRQA 3GZIA 3G1OA 5D1RA 4AF5A 2OERA 3ZQGA 3CCYA 3EUPA 1JUSA 3SFIA 3VVXA 2V57A 4JYKA 3GEUA 4M3FA 3QQAA 5EFYA 3BHQA 3LSJA 1RKTA 2VKVA 4ICHA 4D7NA 2HYJA 3KZ9A 4OD5A 5GPCA 3ZQHA 2G0EA 2NX4A 5FGLA 3BR2A 2HYTA 4D7MA 2X6OA 2YVXA 5FKOA 3AQSA 3P9TA 3V6GA 5K7HA 3VW0A 5GPAA 3O8GA 4C2MA 4WIBA 4M3BA 4U9LA 4D5FA 2XPUA 3LJLA 1QVTA 4NELA 3ANGA 3BTCA 5FKLA 2RHAA 5J1UA 2XDNA 3G1MA 5EYRA 2R7QA 3DU6A 3IH3A 2FQ4A 5IP6A 2D6YA 3MNLA 5F04A 3VPRA 4M3DA 2RASA 4G12A 5K58A
chains in the Genus database with same CATH topology
3DU5A 3NS4A 2R7WA 2R7SA 3KYLA 2R7OA 2R7XA 4OD5A 2R7RA 2A2FX 4IRVA 2B1EA 2R7QA 3DU6A 2B3WA 3FHNA 2R7TA 2FJI1 5CQGA 3SWHA 3K8PC 2R7UA 3VTIA 4OD4A 2PFVA 4C2MA 2R7VA 4DVYP
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4DVY P;  4IRV A; 
#chains in the Genus database with same CATH topology
 2ZCM A;  1ZK8 A;  2I10 A;  2WGB A;  4U9N A;  2VPR A;  5F0F A;  3ON2 A;  3BR0 A;  2Q24 A;  4W97 A;  2G3B A;  3VVZ A;  3CJD A;  2G7L A;  3O8H A;  3DEW A;  2GBY A;  5CXG A;  4B1R A;  1VI0 A;  5J1Y A;  4X1E A;  1JUP A;  5F08 A;  3C07 A;  4M3E A;  2JJ7 A;  2R7O A;  3ON4 A;  3LSR A;  3PPB A;  2W53 A;  2R7R A;  2Y31 A;  3IH4 A;  2IU5 A;  3LOC A;  2FX0 A;  5HSZ A;  1Z0X A;  3KKC A;  3O60 A;  2R7U A;  2NS8 A;  5J1R A;  4GCL A;  3DPJ A;  2OI8 A;  2NP5 A;  5CW8 A;  3RH2 A;  4MO7 A;  2QWT A;  3HGG A;  3LWJ A;  4MXM A;  4JL3 A;  2QCO A;  5FKK A;  3KYL A;  2GUH A;  2FBQ A;  3BTJ A;  3NNR A;  2UXI A;  3VW1 A;  3BTL A;  4AUX A;  2XGE A;  2UXP A;  3NI7 A;  5IPA A;  5CXI A;  5GP9 A;  3BR3 A;  1JTY A;  2ZOY A;  2A2F X;  2O7T A;  3HE0 A;  3VW2 A;  4M3G A;  2GFN A;  3Q0U A;  4KWA A;  5D19 A;  2TRT A;  2QKO A;  3QPS A;  3BT9 A;  4HKU A;  4D5C A;  2X9D A;  3FK7 A;  3F1B A;  5J3L A;  2ZCN A;  2DG7 A;  4MK6 A;  3LHQ A;  3FK6 A;  2FJ1 A;  4GCK A;  2EH3 A;  1U9O A;  3T6N A;  2ID6 A;  4PXI A;  2QIB A;  3CDL A;  5IOZ A;  3VTI A;  3WHB A;  4DW6 A;  1U9N A;  3C2B A;  4I76 A;  2YVH A;  5K7F A;  3PAS A;  1QPI A;  4AC0 A;  3K8P C;  1SGM A;  2G7S A;  1UI6 A;  4GFL A;  1RPW A;  3BR1 A;  1T56 A;  3ANP A;  2XGC A;  4V2F A;  3BTI A;  3ZQI A;  5HBU A;  1RKW A;  3V78 A;  3BR5 A;  2YVE A;  3BCG A;  5F0H A;  4I6Z A;  5D18 A;  3QKX A;  3TP3 A;  2R7T A;  2TCT A;  1T33 A;  2XPV A;  2FJI 1;  2RAE A;  2Y2Z A;  3CRJ A;  2IAI A;  2IEK A;  2NS7 A;  2F07 A;  5H9T A;  3KKD A;  4UDS A;  2UXO A;  3HTI A;  2R7X A;  3COL A;  1JTX A;  2ZB9 A;  4IRV A;  2REK A;  3B6C A;  2ZCX A;  2UXH A;  2VKE A;  3BNI A;  3HTH A;  5IOY A;  2HQ5 A;  5EZG A;  2ZOZ A;  2PZ9 A;  5K7Z A;  4OD4 A;  4XK4 A;  1ORK A;  2O7O A;  3VP5 A;  3NPI A;  3E7Q A;  4ME9 A;  2R7S A;  3BQZ A;  2DTZ A;  4GCT A;  3VOX A;  2HKU A;  3BRU A;  2FD5 A;  2QOP A;  3HTA A;  2PBX A;  2UXU A;  3G1L A;  4JKZ A;  4GFK A;  5DAJ A;  5FHP A;  3SWH A;  3IUV A;  2JK3 A;  3FIW A;  3VIB A;  3G7R A;  4JNN A;  5EZH A;  2XRL A;  3LSP A;  3PM1 A;  3VVY A;  2Y30 A;  4ABZ A;  3HGY A;  4AC6 A;  5HAW A;  3Q0W A;  3HIM A;  5FKM A;  4CGR A;  5F1J A;  3ZQF A;  3IH2 A;  5CQG A;  5C4Y A;  4DVY P;  3DU5 A;  3QPL A;  3NS4 A;  3MVP A;  2OPT A;  2HXI A;  1JUM A;  1Z77 A;  3Q3S A;  3RD3 A;  3S5R A;  1QVU A;  5F0C A;  3FHN A;  3KNW A;  3ZQL A;  2OF7 A;  5FKN A;  4YZE A;  2ZY9 A;  2PFV A;  3VUQ A;  5AQC A;  2NP3 A;  3F0C A;  3SDG A;  2G7G A;  3BJB A;  3NRG A;  5FMP A;  3B6A A;  4W1U A;  2XPW A;  3BQY A;  3WHC A;  2B3W A;  3G56 A;  3B81 A;  2DG8 A;  2WV1 A;  1UI5 A;  2XGD A;  4NN1 A;  4V2G A;  3HTJ A;  2GEN A;  3VOK A;  1JT0 A;  2R7W A;  2ID3 A;  3TP0 A;  1JT6 A;  2QTQ A;  3DCF A;  2B1E A;  3Q0V A;  3EGQ A;  1BJZ A;  3JSJ A;  4ACI A;  3BR6 A;  3QBM A;  3CWR A;  4B3A A;  5F27 A;  2HXO A;  3AQT A;  2WUI A;  1ZKG A;  2XB5 A;  1A6I A;  4L62 A;  2IBD A;  3NXC A;  2R7V A;  3FRQ A;  3GZI A;  3G1O A;  5D1R A;  4AF5 A;  2OER A;  3ZQG A;  3CCY A;  3EUP A;  1JUS A;  3SFI A;  3VVX A;  2V57 A;  4JYK A;  3GEU A;  4M3F A;  3QQA A;  5EFY A;  3BHQ A;  3LSJ A;  1RKT A;  2VKV A;  4ICH A;  4D7N A;  2HYJ A;  3KZ9 A;  4OD5 A;  5GPC A;  3ZQH A;  2G0E A;  2NX4 A;  5FGL A;  3BR2 A;  2HYT A;  4D7M A;  2X6O A;  2YVX A;  5FKO A;  3AQS A;  3P9T A;  3V6G A;  5K7H A;  3VW0 A;  5GPA A;  3O8G A;  4C2M A;  4WIB A;  4M3B A;  4U9L A;  4D5F A;  2XPU A;  3LJL A;  1QVT A;  4NEL A;  3ANG A;  3BTC A;  5FKL A;  2RHA A;  5J1U A;  2XDN A;  3G1M A;  5EYR A;  2R7Q A;  3DU6 A;  3IH3 A;  2FQ4 A;  5IP6 A;  2D6Y A;  3MNL A;  5F04 A;  3VPR A;  4M3D A;  2RAS A;  4G12 A;  5K58 A; 
#chains in the Genus database with same CATH homology
 3DU5 A;  3NS4 A;  2R7W A;  2R7S A;  3KYL A;  2R7O A;  2R7X A;  4OD5 A;  2R7R A;  2A2F X;  4IRV A;  2B1E A;  2R7Q A;  3DU6 A;  2B3W A;  3FHN A;  2R7T A;  2FJI 1;  5CQG A;  3SWH A;  3K8P C;  2R7U A;  3VTI A;  4OD4 A;  2PFV A;  4C2M A;  2R7V A;  4DVY P; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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