4IRVA

Structure of the helicobacter pylori caga oncogene bound to the human tumor suppressor apoptosis-stimulating protein of p53-2
Total Genus 76
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
76
sequence length
198
structure length
197
Chain Sequence
QQFINNLQVAFIKVDNVVASFDPDQKPIVDKNDRDNRQAFDGISQLREEYSNKAIKNPTKKNQYFSDFIDKSNDLINKDNLIDVESSTKSFQKFGDQRYQIFTSWVSHQKDPSKINTRSIRNFMENIIQPPIPDDKEKAEFLKSAKQSFAGIIIGNQIRTDQKFMGVFDESLKERQEAEKGGPTGGDWLDIFLSFIF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Protein binding
source organism Helicobacter pylori
publication title Structure of the Helicobacter pylori CagA oncoprotein bound to the human tumor suppressor ASPP2.
pubmed doi rcsb
molecule keywords Cytotoxicity-associated immunodominant antigen
total genus 76
structure length 197
sequence length 198
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2013-01-15
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.357.130 Mainly Alpha Orthogonal Bundle Tetracycline Repressor; domain 2 Tetracycline Repressor; domain 2 4irvA00
4DVYP 4IRVA
chains in the Genus database with same CATH superfamily
3IH2A 5J1RA 3NRGA 3F0CA 4U9NA 3GZIA 2OPTA 4JL3A 2UXOA 3IUVA 3G1LA 2XGCA 2YVEA 4M3DA 2B3WA 4M3GA 1RKTA 4PXIA 3BNIA 3BTIA 3WHCA 4D5CA 3ON4A 4NELA 1QVUA 3DPJA 5D18A 4V2GA 2DG8A 1RKWA 3B6AA 2XB5A 2XDNA 5GP9A 4GCTA 2FBQA 2R7SA 2R7TA 3COLA 4C2MA 3EUPA 3HTAA 2IBDA 3T6NA 3LOCA 3ZQFA 3JSJA 2RAEA 4UDSA 5K58A 3LSJA 2NS7A 2V57A 5DAJA 2HYJA 3K8PC 2R7WA 2FJI1 2IEKA 1UI5A 3VUQA 3VIBA 3CCYA 2B1EA 3KYLA 3BR1A 4KWAA 4JNNA 5FKMA 3E7QA 1A6IA 3V78A 2ZCXA 4G12A 3FK7A 5IOYA 2XPVA 4AF5A 3QPLA 2R7QA 3HE0A 2QOPA 3QPSA 3PASA 1UI6A 3QQAA 2R7OA 3NI7A 1Z77A 3BQYA 3BTJA 4WIBA 2QIBA 4OD5A 1JT6A 2GENA 5F27A 3G1OA 5CXIA 2I10A 5FKKA 2ZOZA 3HTHA 3VVXA 4I6ZA 3VP5A 3WHBA 3LJLA 3VOKA 2WV1A 2O7OA 1SGMA 4D5FA 2QCOA 4ME9A 2R7RA 5F04A 3S5RA 3KZ9A 3Q0WA 2VKVA 4YZEA 3BCGA 5EZHA 3AQSA 2UXIA 3VPRA 2HXIA 1VI0A 3BR0A 3VVYA 2JJ7A 3BJBA 4W1UA 4OD4A 3DEWA 3ANGA 1JTXA 2D6YA 3QKXA 4MO7A 3TP0A 4D7MA 1RPWA 3SDGA 2GUHA 3CJDA 2UXUA 3EGQA 4AUXA 1JUPA 5FKLA 5EFYA 2DTZA 3DU6A 4CGRA 2FX0A 3DCFA 4V2FA 3BT9A 3NXCA 2PZ9A 4AC6A 2RASA 2TCTA 3KKCA 2FJ1A 3HGGA 3PM1A 3LSPA 1U9NA 3C2BA 1JUSA 4ABZA 2YVXA 3Q3SA 3Q0UA 4X1EA 3GEUA 5IP6A 2IAIA 3ZQHA 3ZQLA 2G7SA 5HSZA 5AQCA 1U9OA 2ZB9A 2PBXA 3ANPA 3HIMA 2VPRA 2HYTA 5D1RA 1ORKA 2OF7A 4GFKA 3BR3A 3VW1A 5IOZA 2OERA 2ID3A 4M3FA 5H9TA 2O7TA 5J1YA 2QWTA 5FGLA 3MVPA 3VW2A 2WUIA 2G7LA 5K7HA 4B3AA 3HTIA 2Y2ZA 4B1RA 2ID6A 1T33A 2UXHA 3MNLA 1ZK8A 3NS4A 2RHAA 3FIWA 3BHQA 4MXMA 3RD3A 3G56A 1T56A 4W97A 2XRLA 3LSRA 2Q24A 2ZCNA 4ACIA 5GPCA 4GCLA 2G0EA 3BR5A 3FRQA 3KKDA 4D7NA 5K7ZA 3AQTA 3F1BA 2PFVA 4NN1A 5F0HA 4GCKA 3LHQA 5F1JA 2XGEA 1ZKGA 2NP3A 3BR2A 2QKOA 2R7UA 4IRVA 3RH2A 3FHNA 1JT0A 3G1MA 3SWHA 2XPUA 2XPWA 5C4YA 1JUMA 2Y30A 2WGBA 2Y31A 2DG7A 4GFLA 4DVYP 5HBUA 3CWRA 4M3EA 3BRUA 3SFIA 3KNWA 2X6OA 2ZY9A 3NNRA 3CRJA 2G3BA 4ICHA 2ZOYA 3FK6A 3DU5A 3VVZA 5J3LA 2QTQA 3O8GA 4AC0A 3B6CA 2IU5A 5FKOA 5F0FA 5D19A 5HAWA 4MK6A 4I76A 4DW6A 3PPBA 3O8HA 3BTLA 4U9LA 5K7FA 1QPIA 2JK3A 2X9DA 3O60A 3P9TA 1Z0XA 2F07A 3BR6A 2R7VA 2FD5A 4HKUA 3VTIA 4L62A 3C07A 2GFNA 2NX4A 3IH4A 3ON2A 4JKZA 2YVHA 3V6GA 5CW8A 2XGDA 3G7RA 2VKEA 3B81A 3QBMA 5EZGA 2OI8A 5F0CA 5FKNA 1QVTA 3TP3A 2HQ5A 3CDLA 3HGYA 2A2FX 5J1UA 5FMPA 2G7GA 3HTJA 4XK4A 2R7XA 5FHPA 2UXPA 1BJZA 2NS8A 3VOXA 2TRTA 3Q0VA 5GPAA 2REKA 5CXGA 3VW0A 3BQZA 3BTCA 3NPIA 3ZQGA 1JTYA 2FQ4A 3LWJA 3ZQIA 5CQGA 2HXOA 2W53A 4JYKA 2EH3A 5EYRA 3IH3A 2ZCMA 2GBYA 2NP5A 5IPAA 5F08A 2HKUA 4M3BA
chains in the Genus database with same CATH topology
3DU6A 3FHNA 3DU5A 3SWHA 4OD4A 3K8PC 2R7VA 5CQGA 2R7WA 2FJI1 3VTIA 2R7OA 2A2FX 2R7RA 2B3WA 2B1EA 2R7SA 3KYLA 2R7TA 4DVYP 2PFVA 2R7XA 4OD5A 4C2MA 3NS4A 2R7UA 2R7QA 4IRVA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4DVY P;  4IRV A; 
#chains in the Genus database with same CATH topology
 3IH2 A;  5J1R A;  3NRG A;  3F0C A;  4U9N A;  3GZI A;  2OPT A;  4JL3 A;  2UXO A;  3IUV A;  3G1L A;  2XGC A;  2YVE A;  4M3D A;  2B3W A;  4M3G A;  1RKT A;  4PXI A;  3BNI A;  3BTI A;  3WHC A;  4D5C A;  3ON4 A;  4NEL A;  1QVU A;  3DPJ A;  5D18 A;  4V2G A;  2DG8 A;  1RKW A;  3B6A A;  2XB5 A;  2XDN A;  5GP9 A;  4GCT A;  2FBQ A;  2R7S A;  2R7T A;  3COL A;  4C2M A;  3EUP A;  3HTA A;  2IBD A;  3T6N A;  3LOC A;  3ZQF A;  3JSJ A;  2RAE A;  4UDS A;  5K58 A;  3LSJ A;  2NS7 A;  2V57 A;  5DAJ A;  2HYJ A;  3K8P C;  2R7W A;  2FJI 1;  2IEK A;  1UI5 A;  3VUQ A;  3VIB A;  3CCY A;  2B1E A;  3KYL A;  3BR1 A;  4KWA A;  4JNN A;  5FKM A;  3E7Q A;  1A6I A;  3V78 A;  2ZCX A;  4G12 A;  3FK7 A;  5IOY A;  2XPV A;  4AF5 A;  3QPL A;  2R7Q A;  3HE0 A;  2QOP A;  3QPS A;  3PAS A;  1UI6 A;  3QQA A;  2R7O A;  3NI7 A;  1Z77 A;  3BQY A;  3BTJ A;  4WIB A;  2QIB A;  4OD5 A;  1JT6 A;  2GEN A;  5F27 A;  3G1O A;  5CXI A;  2I10 A;  5FKK A;  2ZOZ A;  3HTH A;  3VVX A;  4I6Z A;  3VP5 A;  3WHB A;  3LJL A;  3VOK A;  2WV1 A;  2O7O A;  1SGM A;  4D5F A;  2QCO A;  4ME9 A;  2R7R A;  5F04 A;  3S5R A;  3KZ9 A;  3Q0W A;  2VKV A;  4YZE A;  3BCG A;  5EZH A;  3AQS A;  2UXI A;  3VPR A;  2HXI A;  1VI0 A;  3BR0 A;  3VVY A;  2JJ7 A;  3BJB A;  4W1U A;  4OD4 A;  3DEW A;  3ANG A;  1JTX A;  2D6Y A;  3QKX A;  4MO7 A;  3TP0 A;  4D7M A;  1RPW A;  3SDG A;  2GUH A;  3CJD A;  2UXU A;  3EGQ A;  4AUX A;  1JUP A;  5FKL A;  5EFY A;  2DTZ A;  3DU6 A;  4CGR A;  2FX0 A;  3DCF A;  4V2F A;  3BT9 A;  3NXC A;  2PZ9 A;  4AC6 A;  2RAS A;  2TCT A;  3KKC A;  2FJ1 A;  3HGG A;  3PM1 A;  3LSP A;  1U9N A;  3C2B A;  1JUS A;  4ABZ A;  2YVX A;  3Q3S A;  3Q0U A;  4X1E A;  3GEU A;  5IP6 A;  2IAI A;  3ZQH A;  3ZQL A;  2G7S A;  5HSZ A;  5AQC A;  1U9O A;  2ZB9 A;  2PBX A;  3ANP A;  3HIM A;  2VPR A;  2HYT A;  5D1R A;  1ORK A;  2OF7 A;  4GFK A;  3BR3 A;  3VW1 A;  5IOZ A;  2OER A;  2ID3 A;  4M3F A;  5H9T A;  2O7T A;  5J1Y A;  2QWT A;  5FGL A;  3MVP A;  3VW2 A;  2WUI A;  2G7L A;  5K7H A;  4B3A A;  3HTI A;  2Y2Z A;  4B1R A;  2ID6 A;  1T33 A;  2UXH A;  3MNL A;  1ZK8 A;  3NS4 A;  2RHA A;  3FIW A;  3BHQ A;  4MXM A;  3RD3 A;  3G56 A;  1T56 A;  4W97 A;  2XRL A;  3LSR A;  2Q24 A;  2ZCN A;  4ACI A;  5GPC A;  4GCL A;  2G0E A;  3BR5 A;  3FRQ A;  3KKD A;  4D7N A;  5K7Z A;  3AQT A;  3F1B A;  2PFV A;  4NN1 A;  5F0H A;  4GCK A;  3LHQ A;  5F1J A;  2XGE A;  1ZKG A;  2NP3 A;  3BR2 A;  2QKO A;  2R7U A;  4IRV A;  3RH2 A;  3FHN A;  1JT0 A;  3G1M A;  3SWH A;  2XPU A;  2XPW A;  5C4Y A;  1JUM A;  2Y30 A;  2WGB A;  2Y31 A;  2DG7 A;  4GFL A;  4DVY P;  5HBU A;  3CWR A;  4M3E A;  3BRU A;  3SFI A;  3KNW A;  2X6O A;  2ZY9 A;  3NNR A;  3CRJ A;  2G3B A;  4ICH A;  2ZOY A;  3FK6 A;  3DU5 A;  3VVZ A;  5J3L A;  2QTQ A;  3O8G A;  4AC0 A;  3B6C A;  2IU5 A;  5FKO A;  5F0F A;  5D19 A;  5HAW A;  4MK6 A;  4I76 A;  4DW6 A;  3PPB A;  3O8H A;  3BTL A;  4U9L A;  5K7F A;  1QPI A;  2JK3 A;  2X9D A;  3O60 A;  3P9T A;  1Z0X A;  2F07 A;  3BR6 A;  2R7V A;  2FD5 A;  4HKU A;  3VTI A;  4L62 A;  3C07 A;  2GFN A;  2NX4 A;  3IH4 A;  3ON2 A;  4JKZ A;  2YVH A;  3V6G A;  5CW8 A;  2XGD A;  3G7R A;  2VKE A;  3B81 A;  3QBM A;  5EZG A;  2OI8 A;  5F0C A;  5FKN A;  1QVT A;  3TP3 A;  2HQ5 A;  3CDL A;  3HGY A;  2A2F X;  5J1U A;  5FMP A;  2G7G A;  3HTJ A;  4XK4 A;  2R7X A;  5FHP A;  2UXP A;  1BJZ A;  2NS8 A;  3VOX A;  2TRT A;  3Q0V A;  5GPA A;  2REK A;  5CXG A;  3VW0 A;  3BQZ A;  3BTC A;  3NPI A;  3ZQG A;  1JTY A;  2FQ4 A;  3LWJ A;  3ZQI A;  5CQG A;  2HXO A;  2W53 A;  4JYK A;  2EH3 A;  5EYR A;  3IH3 A;  2ZCM A;  2GBY A;  2NP5 A;  5IPA A;  5F08 A;  2HKU A;  4M3B A; 
#chains in the Genus database with same CATH homology
 3DU6 A;  3FHN A;  3DU5 A;  3SWH A;  4OD4 A;  3K8P C;  2R7V A;  5CQG A;  2R7W A;  2FJI 1;  3VTI A;  2R7O A;  2A2F X;  2R7R A;  2B3W A;  2B1E A;  2R7S A;  3KYL A;  2R7T A;  4DVY P;  2PFV A;  2R7X A;  4OD5 A;  4C2M A;  3NS4 A;  2R7U A;  2R7Q A;  4IRV A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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