The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
167
|
sequence length |
399
|
structure length |
399
|
Chain Sequence |
GSHMGDKEKETLFKDYLNLIVVKMTEWIGNLEKAEFDVFLERSTPPHSDSDGLLFLDGTKTCFQMFTQQVEVAAGTNQAKILVGVVERFSDLLTKRQKNWISKISEEIKKQINYNHKYDIDPESITPEDECPGGLVEYLIAVSNDQMKAADYAVAISSKYGKLVSKVYEKQITNHLEGTLDGFAEVAQCSSLGLITLMFDDLRKPYQEIFSKTWYMGSQAQQIADTLDEYLLDIKPQMNSVLFVNFIDNVIGETIIKFLTALSFEHSFKNKNNKFLEAMKRDFEIFYQLFVKVLDGNESKDTLITQNFTVMEFFMDLSCEPIDSILDIWQKYLEVYWDSRIDLLVGILKCRKDVSSSERKKIVQQATEMLHEYRRNMEANGVDREPTLMRRFVLEFEKQ
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
The structure of the exocyst subunit Sec6p defines a conserved architecture with diverse roles.
pubmed doi rcsb |
| molecule keywords |
Exocyst complex component SEC6
|
| molecule tags |
Endocytosis/exocytosis
|
| source organism |
Saccharomyces cerevisiae
|
| total genus |
167
|
| structure length |
399
|
| sequence length |
399
|
| chains with identical sequence |
2
|
| ec nomenclature | |
| pdb deposition date | 2006-01-02 |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Orthogonal Bundle | Tetracycline Repressor; domain 2 | Tetracycline Repressor; domain 2 | ||
| Mainly Alpha | Orthogonal Bundle | Tetracycline Repressor; domain 2 | Tetracycline Repressor; domain 2 |
#chains in the Genus database with same CATH superfamily 2FJI 1; 3SWH A; #chains in the Genus database with same CATH topology 3BTI A; 2HYT A; 2W53 A; 1JTX A; 5HSZ A; 5H9T A; 2ZCN A; 2R7S A; 3KKD A; 3TP0 A; 2HQ5 A; 2RAE A; 2XRL A; 1A6I A; 5F0C A; 2GUH A; 2NP5 A; 5J1U A; 2Y31 A; 4MK6 A; 3QQA A; 4CGR A; 3DU5 A; 3Q0W A; 3AQS A; 2OPT A; 5FKK A; 2V57 A; 2PFV A; 5IPA A; 2HXO A; 3TP3 A; 3O60 A; 2G3B A; 1JT0 A; 2Y30 A; 5FKM A; 3G1M A; 4L62 A; 2OF7 A; 5HAW A; 2B3W A; 3GZI A; 3LJL A; 2UXI A; 3QBM A; 5GP9 A; 2X9D A; 1RPW A; 3EUP A; 1RKT A; 2QIB A; 2RHA A; 4GCT A; 3Q3S A; 2A2F X; 4ACI A; 5CXI A; 5AQC A; 3BR3 A; 1JUM A; 2FX0 A; 3NS4 A; 4NEL A; 5FGL A; 2NP3 A; 3O8H A; 2F07 A; 3BR5 A; 2VKV A; 4B3A A; 2PBX A; 3VVZ A; 5GPA A; 4ME9 A; 2DG8 A; 2ZY9 A; 5F0F A; 3LWJ A; 3BCG A; 3E7Q A; 2UXU A; 2JJ7 A; 2GFN A; 3VIB A; 4JL3 A; 2FBQ A; 3FK6 A; 3ZQG A; 2R7R A; 4U9L A; 2G0E A; 3FK7 A; 4M3G A; 4W1U A; 1RKW A; 3G7R A; 2PZ9 A; 3VVY A; 3C2B A; 2XGE A; 3SDG A; 3VP5 A; 2IU5 A; 5J3L A; 3CDL A; 4JKZ A; 4D7M A; 2XGC A; 3Q0U A; 1UI5 A; 4MXM A; 2R7T A; 3ON2 A; 3ANP A; 4AF5 A; 1T56 A; 3PM1 A; 3RD3 A; 4KWA A; 3B81 A; 4B1R A; 2VPR A; 2TRT A; 3BR0 A; 2TCT A; 3KZ9 A; 4YZE A; 5FKN A; 3F0C A; 2NX4 A; 1ZKG A; 3VPR A; 3MNL A; 3IUV A; 3ON4 A; 4ICH A; 3NXC A; 5C4Y A; 3WHC A; 2R7X A; 3IH2 A; 1QVU A; 3G56 A; 2QWT A; 3ZQH A; 2GBY A; 5F0H A; 4HKU A; 2RAS A; 3LOC A; 2FJI 1; 1U9O A; 2D6Y A; 3DCF A; 3WHB A; 3BT9 A; 5IOY A; 5DAJ A; 3V78 A; 2ZOY A; 3HGG A; 2QCO A; 1QPI A; 5CW8 A; 3DPJ A; 2NS8 A; 2XPV A; 5FHP A; 2OI8 A; 1BJZ A; 2QKO A; 3BR6 A; 5EZH A; 4DW6 A; 5IP6 A; 2UXP A; 1QVT A; 2R7Q A; 3CWR A; 4U9N A; 5EYR A; 3VVX A; 2R7O A; 1JUS A; 4JNN A; 1UI6 A; 2REK A; 3SWH A; 2XB5 A; 3SFI A; 4JYK A; 4ABZ A; 5F1J A; 3PAS A; 1U9N A; 2HKU A; 3G1O A; 3FRQ A; 2HXI A; 2WUI A; 3HTI A; 3C07 A; 3G1L A; 2IAI A; 3ZQI A; 4XK4 A; 2IBD A; 1JUP A; 5F08 A; 3RH2 A; 4I76 A; 4OD5 A; 4D5C A; 4I6Z A; 3MVP A; 4MO7 A; 4V2G A; 3F1B A; 4M3E A; 3CCY A; 3DEW A; 4C2M A; 3B6A A; 5F04 A; 2DG7 A; 3CRJ A; 3T6N A; 2R7W A; 1JTY A; 3LHQ A; 3BTL A; 2B1E A; 3LSJ A; 3BRU A; 5J1R A; 4W97 A; 2YVH A; 4GCK A; 2OER A; 2XPU A; 4M3B A; 2R7U A; 3DU6 A; 4M3D A; 3HGY A; 2I10 A; 3NI7 A; 1JT6 A; 2YVE A; 2G7G A; 3B6C A; 5K7Z A; 3LSR A; 3S5R A; 4M3F A; 3BTJ A; 3K8P C; 3HTA A; 2ID6 A; 3KYL A; 3BR2 A; 3BR1 A; 2XGD A; 2XPW A; 3VW0 A; 5D19 A; 2Y2Z A; 4OD4 A; 1Z0X A; 3QPS A; 1T33 A; 3HIM A; 2XDN A; 5D18 A; 4D5F A; 2GEN A; 4AC0 A; 4IRV A; 4AUX A; 5J1Y A; 3GEU A; 3LSP A; 3NNR A; 4AC6 A; 3FHN A; 4WIB A; 4V2F A; 3BJB A; 2ID3 A; 3COL A; 4X1E A; 5EZG A; 3VOX A; 1VI0 A; 2X6O A; 4GFL A; 3CJD A; 1ZK8 A; 5IOZ A; 5K7F A; 1SGM A; 5CXG A; 3P9T A; 4G12 A; 3O8G A; 2VKE A; 5F27 A; 3QKX A; 2R7V A; 2JK3 A; 3EGQ A; 3AQT A; 2HYJ A; 2O7O A; 3PPB A; 3BQY A; 3BHQ A; 2YVX A; 3HTH A; 2EH3 A; 5K7H A; 2ZCX A; 4DVY P; 5FKO A; 3NPI A; 2QTQ A; 2G7L A; 3HTJ A; 5HBU A; 2WV1 A; 3IH4 A; 5EFY A; 5D1R A; 3IH3 A; 5FKL A; 2FJ1 A; 2IEK A; 2Q24 A; 5K58 A; 2ZOZ A; 3VOK A; 3ZQL A; 3ANG A; 5GPC A; 3Q0V A; 4PXI A; 4GCL A; 2DTZ A; 2UXO A; 4D7N A; 3BNI A; 2FD5 A; 3VW1 A; 4UDS A; 3VTI A; 3BTC A; 2G7S A; 1ORK A; 3JSJ A; 3V6G A; 4NN1 A; 4GFK A; 3VW2 A; 2UXH A; 2WGB A; 2ZCM A; 3NRG A; 2FQ4 A; 3FIW A; 1Z77 A; 3HE0 A; 3ZQF A; 5FMP A; 3KNW A; 3VUQ A; 2O7T A; 2NS7 A; 3BQZ A; 2ZB9 A; 3KKC A; 5CQG A; 2QOP A; 3QPL A; #chains in the Genus database with same CATH homology 4OD4 A; 4C2M A; 2R7U A; 3DU6 A; 4DVY P; 3NS4 A; 2R7W A; 2R7S A; 2R7R A; 2R7Q A; 2B3W A; 4IRV A; 2R7T A; 2B1E A; 3K8P C; 2R7O A; 3VTI A; 3KYL A; 2R7X A; 2R7V A; 3FHN A; 5CQG A; 3SWH A; 3DU5 A; 2A2F X; 2FJI 1; 2PFV A; 4OD5 A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
