2FJI1

Crystal structure of the c-terminal domain of the exocyst subunit sec6p
Total Genus 167
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
167
sequence length
399
structure length
399
Chain Sequence
GSHMGDKEKETLFKDYLNLIVVKMTEWIGNLEKAEFDVFLERSTPPHSDSDGLLFLDGTKTCFQMFTQQVEVAAGTNQAKILVGVVERFSDLLTKRQKNWISKISEEIKKQINYNHKYDIDPESITPEDECPGGLVEYLIAVSNDQMKAADYAVAISSKYGKLVSKVYEKQITNHLEGTLDGFAEVAQCSSLGLITLMFDDLRKPYQEIFSKTWYMGSQAQQIADTLDEYLLDIKPQMNSVLFVNFIDNVIGETIIKFLTALSFEHSFKNKNNKFLEAMKRDFEIFYQLFVKVLDGNESKDTLITQNFTVMEFFMDLSCEPIDSILDIWQKYLEVYWDSRIDLLVGILKCRKDVSSSERKKIVQQATEMLHEYRRNMEANGVDREPTLMRRFVLEFEKQ
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Exocyst complex component SEC6
publication title The structure of the exocyst subunit Sec6p defines a conserved architecture with diverse roles.
pubmed doi rcsb
source organism Saccharomyces cerevisiae
molecule tags Endocytosis/exocytosis
total genus 167
structure length 399
sequence length 399
chains with identical sequence 2
ec nomenclature
pdb deposition date 2006-01-02
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.357.50 Mainly Alpha Orthogonal Bundle Tetracycline Repressor; domain 2 Tetracycline Repressor; domain 2 2fji101
1.10.357.70 Mainly Alpha Orthogonal Bundle Tetracycline Repressor; domain 2 Tetracycline Repressor; domain 2 2fji102
3SWHA 2FJI1
chains in the Genus database with same CATH superfamily
3V78A 3IUVA 4M3FA 3QPLA 1Z0XA 2PFVA 3CJDA 1QVTA 3NRGA 4MXMA 3BR0A 2HQ5A 3NI7A 5DAJA 4X1EA 5J1YA 2YVEA 3ZQLA 2VPRA 3COLA 3EGQA 2R7OA 1U9NA 2XGCA 3GZIA 3WHCA 5F27A 3HGGA 2W53A 3VVYA 3MNLA 3SFIA 3NXCA 3BTJA 2B1EA 3VPRA 3BJBA 3VP5A 3VW1A 3C07A 5FKOA 1VI0A 5FKNA 3BR1A 4UDSA 3VW0A 2R7XA 3TP0A 5HSZA 3KZ9A 2QCOA 3BTLA 3LJLA 4MO7A 4OD4A 2VKVA 3BT9A 3VUQA 3BNIA 3HTJA 2VKEA 2JJ7A 5J1UA 3MVPA 5CQGA 3KKDA 5K7HA 2QWTA 2OI8A 3AQTA 2ZOYA 4WIBA 2WUIA 4JL3A 3ANPA 1RKTA 2JK3A 3BHQA 4GCTA 3RH2A 2R7SA 2XPUA 3LHQA 3G1OA 3T6NA 4L62A 3VW2A 3CCYA 2R7QA 5K7FA 2G7GA 4IRVA 4G12A 3QKXA 4M3BA 4AF5A 1T33A 5F0FA 2UXIA 3BR5A 4OD5A 3Q0VA 5K7ZA 4YZEA 2R7TA 2DTZA 4HKUA 1JUPA 2O7OA 2OPTA 3FHNA 3BR3A 2HXOA 4ACIA 1JUMA 4GCLA 5FKMA 3BR2A 4JKZA 3V6GA 3F0CA 2IBDA 3HTIA 2HYJA 5EYRA 5J1RA 3BR6A 3IH2A 2X6OA 2X9DA 2OF7A 3Q0UA 2ZB9A 4PXIA 3KKCA 4D7NA 4GCKA 2XDNA 5D19A 5FKKA 3ZQGA 3C2BA 3GEUA 2I10A 4M3GA 5J3LA 4B3AA 3K8PC 3P9TA 2XGDA 3F1BA 3ANGA 3IH3A 2NP5A 1UI6A 2UXOA 5CXGA 4U9NA 2ZY9A 3VOXA 3QPSA 2R7RA 2Y31A 5D1RA 2PBXA 2FBQA 5F0HA 4B1RA 2Q24A 3O8HA 3LWJA 2IAIA 5HAWA 1RPWA 2FQ4A 1Z77A 1ORKA 2G7SA 4ICHA 2O7TA 3PASA 3HTAA 2OERA 5F08A 3B6CA 2G7LA 3CRJA 4GFKA 3G1MA 3FRQA 4V2FA 3IH4A 3LSJA 3BTIA 2ZCMA 4ME9A 4C2MA 5IP6A 4I76A 2FJI1 4D5FA 2B3WA 3DEWA 2FD5A 3BQZA 3DU6A 3VOKA 1RKWA 2DG7A 3HGYA 3G56A 4D5CA 2FJ1A 3KYLA 1ZKGA 4V2GA 2R7VA 5F04A 3Q0WA 3ON4A 3VVXA 4DW6A 3FK6A 3G1LA 5AQCA 2G3BA 2NX4A 2ID3A 5EZGA 4AC6A 3BCGA 3BTCA 5EFYA 1T56A 5GPCA 3O60A 1QPIA 4D7MA 5EZHA 2HXIA 3VIBA 2XRLA 3LSPA 2NS8A 2YVHA 5CXIA 5CW8A 5FKLA 2HYTA 3LSRA 3BRUA 2ZCXA 4M3DA 5H9TA 3DCFA 3NS4A 5D18A 5K58A 4JYKA 5IPAA 3G7RA 2IU5A 2UXUA 3CDLA 2A2FX 3CWRA 2V57A 3HTHA 4M3EA 1JTXA 2RASA 4NN1A 2XGEA 2G0EA 2YVXA 2R7UA 2HKUA 1SGMA 1ZK8A 3B6AA 3ZQHA 1UI5A 1BJZA 3FIWA 2ID6A 3Q3SA 3PM1A 3DU5A 4I6ZA 3B81A 2Y30A 2QOPA 2NP3A 2XPWA 4W1UA 3FK7A 2UXHA 2ZCNA 3E7QA 2GFNA 1JT0A 3TP3A 3O8GA 3ZQFA 1JUSA 1QVUA 3PPBA 3EUPA 2XB5A 2RAEA 4CGRA 3WHBA 5F1JA 1JT6A 2XPVA 2PZ9A 5HBUA 5F0CA 2GBYA 5GP9A 2DG8A 2FX0A 3KNWA 3VTIA 2REKA 3RD3A 2RHAA 4W97A 3NPIA 5FHPA 5GPAA 2TRTA 2GUHA 3DPJA 4U9LA 2ZOZA 4KWAA 3BQYA 4JNNA 2TCTA 2EH3A 3VVZA 3HIMA 3SDGA 3JSJA 3QBMA 4ABZA 3ZQIA 4MK6A 1U9OA 2UXPA 3S5RA 2IEKA 3HE0A 4AC0A 5FMPA 2QTQA 2WGBA 1A6IA 3NNRA 3AQSA 5C4YA 2F07A 3ON2A 4DVYP 5FGLA 2WV1A 2NS7A 2R7WA 4AUXA 3QQAA 2Y2ZA 4GFLA 5IOYA 4NELA 2QIBA 5IOZA 4XK4A 2GENA 2D6YA 1JTYA 2QKOA 3LOCA 3SWHA
chains in the Genus database with same CATH topology
2R7OA 3KYLA 4IRVA 3DU5A 2R7WA 2R7XA 2R7VA 2A2FX 5CQGA 3K8PC 4C2MA 2PFVA 2FJI1 4OD5A 2B3WA 3VTIA 3DU6A 2R7TA 3NS4A 2R7UA 2B1EA 2R7SA 3FHNA 4OD4A 2R7QA 3SWHA 2R7RA 4DVYP
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3SWH A;  2FJI 1; 
#chains in the Genus database with same CATH topology
 3V78 A;  3IUV A;  4M3F A;  3QPL A;  1Z0X A;  2PFV A;  3CJD A;  1QVT A;  3NRG A;  4MXM A;  3BR0 A;  2HQ5 A;  3NI7 A;  5DAJ A;  4X1E A;  5J1Y A;  2YVE A;  3ZQL A;  2VPR A;  3COL A;  3EGQ A;  2R7O A;  1U9N A;  2XGC A;  3GZI A;  3WHC A;  5F27 A;  3HGG A;  2W53 A;  3VVY A;  3MNL A;  3SFI A;  3NXC A;  3BTJ A;  2B1E A;  3VPR A;  3BJB A;  3VP5 A;  3VW1 A;  3C07 A;  5FKO A;  1VI0 A;  5FKN A;  3BR1 A;  4UDS A;  3VW0 A;  2R7X A;  3TP0 A;  5HSZ A;  3KZ9 A;  2QCO A;  3BTL A;  3LJL A;  4MO7 A;  4OD4 A;  2VKV A;  3BT9 A;  3VUQ A;  3BNI A;  3HTJ A;  2VKE A;  2JJ7 A;  5J1U A;  3MVP A;  5CQG A;  3KKD A;  5K7H A;  2QWT A;  2OI8 A;  3AQT A;  2ZOY A;  4WIB A;  2WUI A;  4JL3 A;  3ANP A;  1RKT A;  2JK3 A;  3BHQ A;  4GCT A;  3RH2 A;  2R7S A;  2XPU A;  3LHQ A;  3G1O A;  3T6N A;  4L62 A;  3VW2 A;  3CCY A;  2R7Q A;  5K7F A;  2G7G A;  4IRV A;  4G12 A;  3QKX A;  4M3B A;  4AF5 A;  1T33 A;  5F0F A;  2UXI A;  3BR5 A;  4OD5 A;  3Q0V A;  5K7Z A;  4YZE A;  2R7T A;  2DTZ A;  4HKU A;  1JUP A;  2O7O A;  2OPT A;  3FHN A;  3BR3 A;  2HXO A;  4ACI A;  1JUM A;  4GCL A;  5FKM A;  3BR2 A;  4JKZ A;  3V6G A;  3F0C A;  2IBD A;  3HTI A;  2HYJ A;  5EYR A;  5J1R A;  3BR6 A;  3IH2 A;  2X6O A;  2X9D A;  2OF7 A;  3Q0U A;  2ZB9 A;  4PXI A;  3KKC A;  4D7N A;  4GCK A;  2XDN A;  5D19 A;  5FKK A;  3ZQG A;  3C2B A;  3GEU A;  2I10 A;  4M3G A;  5J3L A;  4B3A A;  3K8P C;  3P9T A;  2XGD A;  3F1B A;  3ANG A;  3IH3 A;  2NP5 A;  1UI6 A;  2UXO A;  5CXG A;  4U9N A;  2ZY9 A;  3VOX A;  3QPS A;  2R7R A;  2Y31 A;  5D1R A;  2PBX A;  2FBQ A;  5F0H A;  4B1R A;  2Q24 A;  3O8H A;  3LWJ A;  2IAI A;  5HAW A;  1RPW A;  2FQ4 A;  1Z77 A;  1ORK A;  2G7S A;  4ICH A;  2O7T A;  3PAS A;  3HTA A;  2OER A;  5F08 A;  3B6C A;  2G7L A;  3CRJ A;  4GFK A;  3G1M A;  3FRQ A;  4V2F A;  3IH4 A;  3LSJ A;  3BTI A;  2ZCM A;  4ME9 A;  4C2M A;  5IP6 A;  4I76 A;  2FJI 1;  4D5F A;  2B3W A;  3DEW A;  2FD5 A;  3BQZ A;  3DU6 A;  3VOK A;  1RKW A;  2DG7 A;  3HGY A;  3G56 A;  4D5C A;  2FJ1 A;  3KYL A;  1ZKG A;  4V2G A;  2R7V A;  5F04 A;  3Q0W A;  3ON4 A;  3VVX A;  4DW6 A;  3FK6 A;  3G1L A;  5AQC A;  2G3B A;  2NX4 A;  2ID3 A;  5EZG A;  4AC6 A;  3BCG A;  3BTC A;  5EFY A;  1T56 A;  5GPC A;  3O60 A;  1QPI A;  4D7M A;  5EZH A;  2HXI A;  3VIB A;  2XRL A;  3LSP A;  2NS8 A;  2YVH A;  5CXI A;  5CW8 A;  5FKL A;  2HYT A;  3LSR A;  3BRU A;  2ZCX A;  4M3D A;  5H9T A;  3DCF A;  3NS4 A;  5D18 A;  5K58 A;  4JYK A;  5IPA A;  3G7R A;  2IU5 A;  2UXU A;  3CDL A;  2A2F X;  3CWR A;  2V57 A;  3HTH A;  4M3E A;  1JTX A;  2RAS A;  4NN1 A;  2XGE A;  2G0E A;  2YVX A;  2R7U A;  2HKU A;  1SGM A;  1ZK8 A;  3B6A A;  3ZQH A;  1UI5 A;  1BJZ A;  3FIW A;  2ID6 A;  3Q3S A;  3PM1 A;  3DU5 A;  4I6Z A;  3B81 A;  2Y30 A;  2QOP A;  2NP3 A;  2XPW A;  4W1U A;  3FK7 A;  2UXH A;  2ZCN A;  3E7Q A;  2GFN A;  1JT0 A;  3TP3 A;  3O8G A;  3ZQF A;  1JUS A;  1QVU A;  3PPB A;  3EUP A;  2XB5 A;  2RAE A;  4CGR A;  3WHB A;  5F1J A;  1JT6 A;  2XPV A;  2PZ9 A;  5HBU A;  5F0C A;  2GBY A;  5GP9 A;  2DG8 A;  2FX0 A;  3KNW A;  3VTI A;  2REK A;  3RD3 A;  2RHA A;  4W97 A;  3NPI A;  5FHP A;  5GPA A;  2TRT A;  2GUH A;  3DPJ A;  4U9L A;  2ZOZ A;  4KWA A;  3BQY A;  4JNN A;  2TCT A;  2EH3 A;  3VVZ A;  3HIM A;  3SDG A;  3JSJ A;  3QBM A;  4ABZ A;  3ZQI A;  4MK6 A;  1U9O A;  2UXP A;  3S5R A;  2IEK A;  3HE0 A;  4AC0 A;  5FMP A;  2QTQ A;  2WGB A;  1A6I A;  3NNR A;  3AQS A;  5C4Y A;  2F07 A;  3ON2 A;  4DVY P;  5FGL A;  2WV1 A;  2NS7 A;  2R7W A;  4AUX A;  3QQA A;  2Y2Z A;  4GFL A;  5IOY A;  4NEL A;  2QIB A;  5IOZ A;  4XK4 A;  2GEN A;  2D6Y A;  1JTY A;  2QKO A;  3LOC A;  3SWH A; 
#chains in the Genus database with same CATH homology
 2R7O A;  3KYL A;  4IRV A;  3DU5 A;  2R7W A;  2R7X A;  2R7V A;  2A2F X;  5CQG A;  3K8P C;  4C2M A;  2PFV A;  2FJI 1;  4OD5 A;  2B3W A;  3VTI A;  3DU6 A;  2R7T A;  3NS4 A;  2R7U A;  2B1E A;  2R7S A;  3FHN A;  4OD4 A;  2R7Q A;  3SWH A;  2R7R A;  4DVY P; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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