2FJI1

Crystal structure of the c-terminal domain of the exocyst subunit sec6p
Total Genus 167
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
167
sequence length
399
structure length
399
Chain Sequence
b'GSHMGDKEKETLFKDYLNLIVVKMTEWIGNLEKAEFDVFLERSTPPHSDSDGLLFLDGTKTCFQMFTQQVEVAAGTNQAKILVGVVERFSDLLTKRQKNWISKISEEIKKQINYNHKYDIDPESITPEDECPGGLVEYLIAVSNDQMKAADYAVAISSKYGKLVSKVYEKQITNHLEGTLDGFAEVAQCSSLGLITLMFDDLRKPYQEIFSKTWYMGSQAQQIADTLDEYLLDIKPQMNSVLFVNFIDNVIGETIIKFLTALSFEHSFKNKNNKFLEAMKRDFEIFYQLFVKVLDGNESKDTLITQNFTVMEFFMDLSCEPIDSILDIWQKYLEVYWDSRIDLLVGILKCRKDVSSSERKKIVQQATEMLHEYRRNMEANGVDREPTLMRRFVLEFEKQ'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Exocyst complex component SEC6
publication title The structure of the exocyst subunit Sec6p defines a conserved architecture with diverse roles.
pubmed doi rcsb
source organism Saccharomyces cerevisiae
molecule tags Endocytosis/exocytosis
total genus 167
structure length 399
sequence length 399
chains with identical sequence 2
ec nomenclature
pdb deposition date 2006-01-02
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.357.50 Mainly Alpha Orthogonal Bundle Tetracycline Repressor; domain 2 Tetracycline Repressor; domain 2 2fji101
1.10.357.70 Mainly Alpha Orthogonal Bundle Tetracycline Repressor; domain 2 Tetracycline Repressor; domain 2 2fji102
3SWHA 2FJI1
chains in the Genus database with same CATH superfamily
1A6IA 5GP9A 2YVEA 1JTXA 1JTYA 2HKUA 3VW2A 3BJBA 2RAEA 2D6YA 2OERA 4UDSA 5EFYA 3VVXA 3NPIA 4HKUA 3VW1A 5IPAA 5GPCA 2GBYA 5D1RA 3CCYA 2TCTA 4CGRA 3S5RA 3ANGA 2O7TA 3ON4A 3DU5A 3ZQGA 2XB5A 3HTJA 2RASA 2G3BA 3V6GA 2UXHA 3VIBA 2ZY9A 2ZCNA 3DCFA 5F08A 3BT9A 5IP6A 5J1YA 2VPRA 5CXGA 1U9OA 2Y31A 3SDGA 4M3FA 5K7HA 3HGGA 4D5CA 5HAWA 3KKCA 3Q0VA 3BR2A 4G12A 1T56A 4JKZA 2R7UA 3BR3A 5F0CA 2JJ7A 2FBQA 3O8HA 3LJLA 4GCKA 3ZQIA 1Z0XA 2QCOA 4JNNA 3BTJA 3FK6A 2GENA 2XRLA 1Z77A 3Q0WA 1QVUA 2QOPA 3VVZA 5K58A 5FKNA 3PASA 2HYTA 3QQAA 5F0HA 4V2GA 4ICHA 3BRUA 4GFLA 2GUHA 5F04A 3G1OA 4M3EA 2XGDA 2PFVA 3NS4A 5EZHA 3RD3A 3HGYA 4D7MA 5FGLA 4W1UA 2ZOYA 1QPIA 2IAIA 4YZEA 3KZ9A 1JUMA 1UI6A 4GCTA 5K7ZA 1RPWA 4D7NA 3VOKA 3VTIA 4M3BA 4AC0A 2I10A 2OI8A 3CRJA 3RH2A 4C2MA 5FMPA 5J1UA 4ABZA 3HTAA 4B1RA 3CDLA 3F1BA 4M3DA 3LSJA 2XDNA 3O8GA 3KYLA 2R7RA 3ZQHA 3MVPA 4AF5A 3VPRA 4MXMA 4GCLA 3BQYA 5J3LA 2HQ5A 2A2FX 5FKOA 3IH2A 4B3AA 2REKA 3SWHA 3B81A 3EGQA 3VP5A 2R7XA 3LWJA 1T33A 2FD5A 3EUPA 4X1EA 4XK4A 5FKLA 3NRGA 3BNIA 1ZKGA 2ZCMA 2PZ9A 4MO7A 1UI5A 3BCGA 2QWTA 3IH4A 4IRVA 5HBUA 4ME9A 3K8PC 3DU6A 5D19A 5EYRA 5CQGA 2R7QA 4GFKA 2NP3A 3E7QA 2DG8A 2YVHA 2UXPA 2XGCA 1U9NA 2ID6A 5AQCA 2O7OA 5FKMA 4L62A 5FHPA 1ORKA 3BR5A 3FIWA 4NELA 3NXCA 2ZOZA 5F1JA 5D18A 3TP3A 2FQ4A 2GFNA 3PPBA 3QPSA 2HXIA 3BQZA 3CJDA 3ZQFA 5GPAA 2DG7A 3JSJA 1QVTA 3DPJA 4U9LA 2B3WA 3MNLA 2X6OA 2WGBA 4I76A 3FK7A 4JYKA 3BR1A 5CXIA 3HIMA 2G7GA 2F07A 3LSPA 1BJZA 4PXIA 3AQTA 3KKDA 2QIBA 2XPUA 5HSZA 3ANPA 2NS8A 2G7LA 3VVYA 3BHQA 3LSRA 4AC6A 5EZGA 2XPVA 2R7OA 3NNRA 2UXUA 4D5FA 3HTHA 3WHBA 4AUXA 3GZIA 2IEKA 2FJI1 3QPLA 3SFIA 2G7SA 3AQSA 4MK6A 1JUPA 2UXIA 2G0EA 3TP0A 3QBMA 2X9DA 3BR6A 3O60A 2QKOA 3G7RA 3WHCA 4KWAA 3VW0A 2IU5A 5IOYA 1JT6A 2Q24A 3FRQA 2ID3A 1VI0A 2FX0A 2VKEA 4JL3A 5H9TA 2OF7A 2NS7A 2WUIA 3ZQLA 2NP5A 5C4YA 2ZCXA 3V78A 5IOZA 4U9NA 4NN1A 4OD5A 1SGMA 3GEUA 2NX4A 4W97A 1JT0A 2OPTA 3IUVA 3FHNA 3BTCA 3G56A 3LHQA 4OD4A 3C07A 4WIBA 2TRTA 3KNWA 2RHAA 3C2BA 2R7WA 2UXOA 3G1MA 5F27A 3NI7A 2VKVA 4I6ZA 4DW6A 5K7FA 3B6CA 4M3GA 2R7TA 2JK3A 2FJ1A 5F0FA 3DEWA 2R7VA 1JUSA 3IH3A 3Q0UA 3HTIA 3LOCA 4V2FA 2HYJA 2QTQA 3B6AA 1RKTA 5FKKA 3G1LA 1RKWA 2B1EA 2V57A 2HXOA 1ZK8A 3VUQA 3COLA 4DVYP 2DTZA 2Y2ZA 3VOXA 3PM1A 2IBDA 3BTIA 3ON2A 5DAJA 2ZB9A 3Q3SA 2Y30A 2W53A 3F0CA 3BR0A 3QKXA 2EH3A 2XGEA 3CWRA 3P9TA 5CW8A 3BTLA 3T6NA 3HE0A 2R7SA 2XPWA 2WV1A 4ACIA 2PBXA 5J1RA 2YVXA
chains in the Genus database with same CATH topology
3SWHA 4IRVA 2R7WA 2R7XA 4C2MA 4OD5A 2PFVA 3NS4A 2B1EA 3K8PC 3DU6A 3DU5A 3KYLA 5CQGA 2R7RA 2R7QA 2R7OA 4DVYP 2R7TA 3FHNA 2R7SA 2R7UA 2A2FX 4OD4A 2B3WA 2R7VA 3VTIA 2FJI1
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3SWH A;  2FJI 1; 
#chains in the Genus database with same CATH topology
 1A6I A;  5GP9 A;  2YVE A;  1JTX A;  1JTY A;  2HKU A;  3VW2 A;  3BJB A;  2RAE A;  2D6Y A;  2OER A;  4UDS A;  5EFY A;  3VVX A;  3NPI A;  4HKU A;  3VW1 A;  5IPA A;  5GPC A;  2GBY A;  5D1R A;  3CCY A;  2TCT A;  4CGR A;  3S5R A;  3ANG A;  2O7T A;  3ON4 A;  3DU5 A;  3ZQG A;  2XB5 A;  3HTJ A;  2RAS A;  2G3B A;  3V6G A;  2UXH A;  3VIB A;  2ZY9 A;  2ZCN A;  3DCF A;  5F08 A;  3BT9 A;  5IP6 A;  5J1Y A;  2VPR A;  5CXG A;  1U9O A;  2Y31 A;  3SDG A;  4M3F A;  5K7H A;  3HGG A;  4D5C A;  5HAW A;  3KKC A;  3Q0V A;  3BR2 A;  4G12 A;  1T56 A;  4JKZ A;  2R7U A;  3BR3 A;  5F0C A;  2JJ7 A;  2FBQ A;  3O8H A;  3LJL A;  4GCK A;  3ZQI A;  1Z0X A;  2QCO A;  4JNN A;  3BTJ A;  3FK6 A;  2GEN A;  2XRL A;  1Z77 A;  3Q0W A;  1QVU A;  2QOP A;  3VVZ A;  5K58 A;  5FKN A;  3PAS A;  2HYT A;  3QQA A;  5F0H A;  4V2G A;  4ICH A;  3BRU A;  4GFL A;  2GUH A;  5F04 A;  3G1O A;  4M3E A;  2XGD A;  2PFV A;  3NS4 A;  5EZH A;  3RD3 A;  3HGY A;  4D7M A;  5FGL A;  4W1U A;  2ZOY A;  1QPI A;  2IAI A;  4YZE A;  3KZ9 A;  1JUM A;  1UI6 A;  4GCT A;  5K7Z A;  1RPW A;  4D7N A;  3VOK A;  3VTI A;  4M3B A;  4AC0 A;  2I10 A;  2OI8 A;  3CRJ A;  3RH2 A;  4C2M A;  5FMP A;  5J1U A;  4ABZ A;  3HTA A;  4B1R A;  3CDL A;  3F1B A;  4M3D A;  3LSJ A;  2XDN A;  3O8G A;  3KYL A;  2R7R A;  3ZQH A;  3MVP A;  4AF5 A;  3VPR A;  4MXM A;  4GCL A;  3BQY A;  5J3L A;  2HQ5 A;  2A2F X;  5FKO A;  3IH2 A;  4B3A A;  2REK A;  3SWH A;  3B81 A;  3EGQ A;  3VP5 A;  2R7X A;  3LWJ A;  1T33 A;  2FD5 A;  3EUP A;  4X1E A;  4XK4 A;  5FKL A;  3NRG A;  3BNI A;  1ZKG A;  2ZCM A;  2PZ9 A;  4MO7 A;  1UI5 A;  3BCG A;  2QWT A;  3IH4 A;  4IRV A;  5HBU A;  4ME9 A;  3K8P C;  3DU6 A;  5D19 A;  5EYR A;  5CQG A;  2R7Q A;  4GFK A;  2NP3 A;  3E7Q A;  2DG8 A;  2YVH A;  2UXP A;  2XGC A;  1U9N A;  2ID6 A;  5AQC A;  2O7O A;  5FKM A;  4L62 A;  5FHP A;  1ORK A;  3BR5 A;  3FIW A;  4NEL A;  3NXC A;  2ZOZ A;  5F1J A;  5D18 A;  3TP3 A;  2FQ4 A;  2GFN A;  3PPB A;  3QPS A;  2HXI A;  3BQZ A;  3CJD A;  3ZQF A;  5GPA A;  2DG7 A;  3JSJ A;  1QVT A;  3DPJ A;  4U9L A;  2B3W A;  3MNL A;  2X6O A;  2WGB A;  4I76 A;  3FK7 A;  4JYK A;  3BR1 A;  5CXI A;  3HIM A;  2G7G A;  2F07 A;  3LSP A;  1BJZ A;  4PXI A;  3AQT A;  3KKD A;  2QIB A;  2XPU A;  5HSZ A;  3ANP A;  2NS8 A;  2G7L A;  3VVY A;  3BHQ A;  3LSR A;  4AC6 A;  5EZG A;  2XPV A;  2R7O A;  3NNR A;  2UXU A;  4D5F A;  3HTH A;  3WHB A;  4AUX A;  3GZI A;  2IEK A;  2FJI 1;  3QPL A;  3SFI A;  2G7S A;  3AQS A;  4MK6 A;  1JUP A;  2UXI A;  2G0E A;  3TP0 A;  3QBM A;  2X9D A;  3BR6 A;  3O60 A;  2QKO A;  3G7R A;  3WHC A;  4KWA A;  3VW0 A;  2IU5 A;  5IOY A;  1JT6 A;  2Q24 A;  3FRQ A;  2ID3 A;  1VI0 A;  2FX0 A;  2VKE A;  4JL3 A;  5H9T A;  2OF7 A;  2NS7 A;  2WUI A;  3ZQL A;  2NP5 A;  5C4Y A;  2ZCX A;  3V78 A;  5IOZ A;  4U9N A;  4NN1 A;  4OD5 A;  1SGM A;  3GEU A;  2NX4 A;  4W97 A;  1JT0 A;  2OPT A;  3IUV A;  3FHN A;  3BTC A;  3G56 A;  3LHQ A;  4OD4 A;  3C07 A;  4WIB A;  2TRT A;  3KNW A;  2RHA A;  3C2B A;  2R7W A;  2UXO A;  3G1M A;  5F27 A;  3NI7 A;  2VKV A;  4I6Z A;  4DW6 A;  5K7F A;  3B6C A;  4M3G A;  2R7T A;  2JK3 A;  2FJ1 A;  5F0F A;  3DEW A;  2R7V A;  1JUS A;  3IH3 A;  3Q0U A;  3HTI A;  3LOC A;  4V2F A;  2HYJ A;  2QTQ A;  3B6A A;  1RKT A;  5FKK A;  3G1L A;  1RKW A;  2B1E A;  2V57 A;  2HXO A;  1ZK8 A;  3VUQ A;  3COL A;  4DVY P;  2DTZ A;  2Y2Z A;  3VOX A;  3PM1 A;  2IBD A;  3BTI A;  3ON2 A;  5DAJ A;  2ZB9 A;  3Q3S A;  2Y30 A;  2W53 A;  3F0C A;  3BR0 A;  3QKX A;  2EH3 A;  2XGE A;  3CWR A;  3P9T A;  5CW8 A;  3BTL A;  3T6N A;  3HE0 A;  2R7S A;  2XPW A;  2WV1 A;  4ACI A;  2PBX A;  5J1R A;  2YVX A; 
#chains in the Genus database with same CATH homology
 3SWH A;  4IRV A;  2R7W A;  2R7X A;  4C2M A;  4OD5 A;  2PFV A;  3NS4 A;  2B1E A;  3K8P C;  3DU6 A;  3DU5 A;  3KYL A;  5CQG A;  2R7R A;  2R7Q A;  2R7O A;  4DVY P;  2R7T A;  3FHN A;  2R7S A;  2R7U A;  2A2F X;  4OD4 A;  2B3W A;  2R7V A;  3VTI A;  2FJI 1; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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