2FJI1

Crystal structure of the c-terminal domain of the exocyst subunit sec6p
Total Genus 167
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
167
sequence length
399
structure length
399
Chain Sequence
GSHMGDKEKETLFKDYLNLIVVKMTEWIGNLEKAEFDVFLERSTPPHSDSDGLLFLDGTKTCFQMFTQQVEVAAGTNQAKILVGVVERFSDLLTKRQKNWISKISEEIKKQINYNHKYDIDPESITPEDECPGGLVEYLIAVSNDQMKAADYAVAISSKYGKLVSKVYEKQITNHLEGTLDGFAEVAQCSSLGLITLMFDDLRKPYQEIFSKTWYMGSQAQQIADTLDEYLLDIKPQMNSVLFVNFIDNVIGETIIKFLTALSFEHSFKNKNNKFLEAMKRDFEIFYQLFVKVLDGNESKDTLITQNFTVMEFFMDLSCEPIDSILDIWQKYLEVYWDSRIDLLVGILKCRKDVSSSERKKIVQQATEMLHEYRRNMEANGVDREPTLMRRFVLEFEKQ
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Endocytosis/exocytosis
source organism Saccharomyces cerevisiae
publication title The structure of the exocyst subunit Sec6p defines a conserved architecture with diverse roles.
pubmed doi rcsb
molecule keywords Exocyst complex component SEC6
total genus 167
structure length 399
sequence length 399
chains with identical sequence 2
ec nomenclature
pdb deposition date 2006-01-02
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.357.50 Mainly Alpha Orthogonal Bundle Tetracycline Repressor; domain 2 Tetracycline Repressor; domain 2 2fji101
1.10.357.70 Mainly Alpha Orthogonal Bundle Tetracycline Repressor; domain 2 Tetracycline Repressor; domain 2 2fji102
2FJI1 3SWHA
chains in the Genus database with same CATH superfamily
3ZQGA 3QPLA 2YVXA 1QVUA 2V57A 5IPAA 2Y30A 4AC0A 2HYTA 2FJ1A 3B6CA 3HTHA 5HBUA 2R7WA 3ON2A 1SGMA 4V2GA 3LHQA 3BCGA 4YZEA 2XGEA 3ON4A 5EFYA 3VVYA 1UI5A 4UDSA 3HGYA 3GZIA 2WV1A 5F27A 5K58A 3VVXA 1BJZA 2UXUA 3HTIA 3DU5A 3VOXA 2R7QA 2ID6A 2WUIA 5GP9A 3FHNA 3VW1A 4B3AA 2TCTA 2XB5A 3PPBA 2XGDA 2PFVA 2PBXA 2WGBA 5FKNA 4AF5A 4NN1A 4PXIA 2ID3A 2D6YA 2R7RA 3G1OA 3GEUA 4M3GA 3C07A 3CWRA 3BTCA 3HTAA 4GCTA 3F0CA 4I6ZA 4DVYP 3BRUA 1U9NA 4GCKA 3NPIA 5F08A 1ZK8A 3LSJA 4X1EA 3SDGA 3Q0UA 3IH4A 2HXIA 2IEKA 4D5CA 1Z0XA 2ZOYA 3C2BA 3VUQA 5D1RA 2ZY9A 5K7HA 5EYRA 3NXCA 1RKWA 4U9NA 2FJI1 4M3BA 2QKOA 3CCYA 2FQ4A 3MNLA 3CRJA 2EH3A 3HGGA 3HIMA 3BR2A 2QIBA 3PM1A 5FKKA 4DW6A 5HSZA 3BTIA 3BR3A 1U9OA 3ANGA 2O7TA 3LJLA 3RH2A 3AQTA 2JK3A 2G7SA 2Q24A 5C4YA 4C2MA 2NP3A 5FGLA 5FKLA 2RASA 4D7NA 1VI0A 3E7QA 5F1JA 5F04A 3PASA 3BQZA 3NNRA 5IP6A 4ME9A 1QPIA 4HKUA 1T33A 2IAIA 2XDNA 3FIWA 2HQ5A 2TRTA 1JUPA 3VP5A 5EZGA 3G56A 2DTZA 5CXIA 2FBQA 2JJ7A 2OF7A 2QOPA 2G7LA 2OI8A 3NS4A 3HTJA 2UXIA 2RAEA 3BJBA 3DU6A 2A2FX 2R7UA 2DG8A 3BNIA 3VVZA 3V6GA 3IH3A 1QVTA 2GUHA 4D7MA 3LOCA 2I10A 4MXMA 2NX4A 2GBYA 3Q0WA 5DAJA 3TP3A 5F0HA 4U9LA 3O8GA 3V78A 3IUVA 2UXHA 3BR0A 4GCLA 2IBDA 3K8PC 3SWHA 1ORKA 3KNWA 3T6NA 3B6AA 3KKCA 2G0EA 4CGRA 5F0CA 2XPWA 2NP5A 2XRLA 2B1EA 2F07A 2ZCNA 3Q3SA 2G3BA 4M3FA 2FD5A 5FMPA 3G1MA 2QWTA 4JKZA 4JNNA 4M3DA 5FKOA 3P9TA 3KZ9A 1RKTA 3S5RA 3EUPA 2R7OA 3VIBA 3VPRA 4GFLA 4KWAA 5FKMA 5K7ZA 3BR6A 1RPWA 5J1RA 2ZB9A 2VKEA 4IRVA 1JTXA 5GPAA 1UI6A 4V2FA 5GPCA 3G1LA 3FK7A 2NS7A 2ZCMA 3FK6A 3BTLA 2OPTA 2VPRA 3COLA 5IOYA 5IOZA 2VKVA 3SFIA 3O60A 4WIBA 2GENA 5FHPA 4B1RA 4ABZA 3G7RA 2Y2ZA 1A6IA 3BTJA 3CJDA 5HAWA 3VTIA 5J3LA 2DG7A 2XPUA 3QBMA 4NELA 2NS8A 2QTQA 3WHCA 5AQCA 3BT9A 2R7TA 3DCFA 3VW2A 3QQAA 3BR5A 2YVHA 2ZOZA 2B3WA 1JUSA 5J1UA 2R7XA 3VOKA 5EZHA 2QCOA 4GFKA 5CW8A 2FX0A 1JT6A 3KKDA 3QPSA 2X6OA 5CXGA 3MVPA 2HYJA 4G12A 3ZQFA 4W97A 4MK6A 3FRQA 2YVEA 3LSPA 3AQSA 4MO7A 2R7VA 3O8HA 4I76A 1JT0A 2W53A 2RHAA 5F0FA 3NRGA 2OERA 3RD3A 2GFNA 2Y31A 3F1BA 5D18A 3DPJA 3DEWA 2IU5A 3EGQA 4OD5A 5D19A 3VW0A 4ICHA 4JYKA 4AC6A 5H9TA 3WHBA 2O7OA 2UXPA 3B81A 1T56A 2ZCXA 3CDLA 1JTYA 3NI7A 2REKA 3QKXA 2PZ9A 4W1UA 2XGCA 4D5FA 4L62A 4M3EA 3BHQA 3LSRA 2G7GA 2X9DA 3TP0A 3JSJA 4ACIA 5CQGA 2R7SA 2HKUA 3ANPA 3ZQHA 2UXOA 3LWJA 4XK4A 3BQYA 5J1YA 1ZKGA 3Q0VA 4AUXA 1JUMA 3IH2A 4OD4A 5K7FA 3ZQLA 2XPVA 4JL3A 3ZQIA 3HE0A 1Z77A 2HXOA 3KYLA 3BR1A
chains in the Genus database with same CATH topology
3K8PC 3SWHA 2R7OA 2FJI1 3FHNA 5CQGA 2R7SA 4C2MA 2R7VA 2R7XA 2PFVA 3NS4A 4OD5A 2B1EA 4IRVA 2R7RA 3VTIA 3DU6A 2A2FX 4OD4A 2R7UA 2R7TA 3DU5A 2R7WA 2R7QA 3KYLA 4DVYP 2B3WA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2FJI 1;  3SWH A; 
#chains in the Genus database with same CATH topology
 3ZQG A;  3QPL A;  2YVX A;  1QVU A;  2V57 A;  5IPA A;  2Y30 A;  4AC0 A;  2HYT A;  2FJ1 A;  3B6C A;  3HTH A;  5HBU A;  2R7W A;  3ON2 A;  1SGM A;  4V2G A;  3LHQ A;  3BCG A;  4YZE A;  2XGE A;  3ON4 A;  5EFY A;  3VVY A;  1UI5 A;  4UDS A;  3HGY A;  3GZI A;  2WV1 A;  5F27 A;  5K58 A;  3VVX A;  1BJZ A;  2UXU A;  3HTI A;  3DU5 A;  3VOX A;  2R7Q A;  2ID6 A;  2WUI A;  5GP9 A;  3FHN A;  3VW1 A;  4B3A A;  2TCT A;  2XB5 A;  3PPB A;  2XGD A;  2PFV A;  2PBX A;  2WGB A;  5FKN A;  4AF5 A;  4NN1 A;  4PXI A;  2ID3 A;  2D6Y A;  2R7R A;  3G1O A;  3GEU A;  4M3G A;  3C07 A;  3CWR A;  3BTC A;  3HTA A;  4GCT A;  3F0C A;  4I6Z A;  4DVY P;  3BRU A;  1U9N A;  4GCK A;  3NPI A;  5F08 A;  1ZK8 A;  3LSJ A;  4X1E A;  3SDG A;  3Q0U A;  3IH4 A;  2HXI A;  2IEK A;  4D5C A;  1Z0X A;  2ZOY A;  3C2B A;  3VUQ A;  5D1R A;  2ZY9 A;  5K7H A;  5EYR A;  3NXC A;  1RKW A;  4U9N A;  2FJI 1;  4M3B A;  2QKO A;  3CCY A;  2FQ4 A;  3MNL A;  3CRJ A;  2EH3 A;  3HGG A;  3HIM A;  3BR2 A;  2QIB A;  3PM1 A;  5FKK A;  4DW6 A;  5HSZ A;  3BTI A;  3BR3 A;  1U9O A;  3ANG A;  2O7T A;  3LJL A;  3RH2 A;  3AQT A;  2JK3 A;  2G7S A;  2Q24 A;  5C4Y A;  4C2M A;  2NP3 A;  5FGL A;  5FKL A;  2RAS A;  4D7N A;  1VI0 A;  3E7Q A;  5F1J A;  5F04 A;  3PAS A;  3BQZ A;  3NNR A;  5IP6 A;  4ME9 A;  1QPI A;  4HKU A;  1T33 A;  2IAI A;  2XDN A;  3FIW A;  2HQ5 A;  2TRT A;  1JUP A;  3VP5 A;  5EZG A;  3G56 A;  2DTZ A;  5CXI A;  2FBQ A;  2JJ7 A;  2OF7 A;  2QOP A;  2G7L A;  2OI8 A;  3NS4 A;  3HTJ A;  2UXI A;  2RAE A;  3BJB A;  3DU6 A;  2A2F X;  2R7U A;  2DG8 A;  3BNI A;  3VVZ A;  3V6G A;  3IH3 A;  1QVT A;  2GUH A;  4D7M A;  3LOC A;  2I10 A;  4MXM A;  2NX4 A;  2GBY A;  3Q0W A;  5DAJ A;  3TP3 A;  5F0H A;  4U9L A;  3O8G A;  3V78 A;  3IUV A;  2UXH A;  3BR0 A;  4GCL A;  2IBD A;  3K8P C;  3SWH A;  1ORK A;  3KNW A;  3T6N A;  3B6A A;  3KKC A;  2G0E A;  4CGR A;  5F0C A;  2XPW A;  2NP5 A;  2XRL A;  2B1E A;  2F07 A;  2ZCN A;  3Q3S A;  2G3B A;  4M3F A;  2FD5 A;  5FMP A;  3G1M A;  2QWT A;  4JKZ A;  4JNN A;  4M3D A;  5FKO A;  3P9T A;  3KZ9 A;  1RKT A;  3S5R A;  3EUP A;  2R7O A;  3VIB A;  3VPR A;  4GFL A;  4KWA A;  5FKM A;  5K7Z A;  3BR6 A;  1RPW A;  5J1R A;  2ZB9 A;  2VKE A;  4IRV A;  1JTX A;  5GPA A;  1UI6 A;  4V2F A;  5GPC A;  3G1L A;  3FK7 A;  2NS7 A;  2ZCM A;  3FK6 A;  3BTL A;  2OPT A;  2VPR A;  3COL A;  5IOY A;  5IOZ A;  2VKV A;  3SFI A;  3O60 A;  4WIB A;  2GEN A;  5FHP A;  4B1R A;  4ABZ A;  3G7R A;  2Y2Z A;  1A6I A;  3BTJ A;  3CJD A;  5HAW A;  3VTI A;  5J3L A;  2DG7 A;  2XPU A;  3QBM A;  4NEL A;  2NS8 A;  2QTQ A;  3WHC A;  5AQC A;  3BT9 A;  2R7T A;  3DCF A;  3VW2 A;  3QQA A;  3BR5 A;  2YVH A;  2ZOZ A;  2B3W A;  1JUS A;  5J1U A;  2R7X A;  3VOK A;  5EZH A;  2QCO A;  4GFK A;  5CW8 A;  2FX0 A;  1JT6 A;  3KKD A;  3QPS A;  2X6O A;  5CXG A;  3MVP A;  2HYJ A;  4G12 A;  3ZQF A;  4W97 A;  4MK6 A;  3FRQ A;  2YVE A;  3LSP A;  3AQS A;  4MO7 A;  2R7V A;  3O8H A;  4I76 A;  1JT0 A;  2W53 A;  2RHA A;  5F0F A;  3NRG A;  2OER A;  3RD3 A;  2GFN A;  2Y31 A;  3F1B A;  5D18 A;  3DPJ A;  3DEW A;  2IU5 A;  3EGQ A;  4OD5 A;  5D19 A;  3VW0 A;  4ICH A;  4JYK A;  4AC6 A;  5H9T A;  3WHB A;  2O7O A;  2UXP A;  3B81 A;  1T56 A;  2ZCX A;  3CDL A;  1JTY A;  3NI7 A;  2REK A;  3QKX A;  2PZ9 A;  4W1U A;  2XGC A;  4D5F A;  4L62 A;  4M3E A;  3BHQ A;  3LSR A;  2G7G A;  2X9D A;  3TP0 A;  3JSJ A;  4ACI A;  5CQG A;  2R7S A;  2HKU A;  3ANP A;  3ZQH A;  2UXO A;  3LWJ A;  4XK4 A;  3BQY A;  5J1Y A;  1ZKG A;  3Q0V A;  4AUX A;  1JUM A;  3IH2 A;  4OD4 A;  5K7F A;  3ZQL A;  2XPV A;  4JL3 A;  3ZQI A;  3HE0 A;  1Z77 A;  2HXO A;  3KYL A;  3BR1 A; 
#chains in the Genus database with same CATH homology
 3K8P C;  3SWH A;  2R7O A;  2FJI 1;  3FHN A;  5CQG A;  2R7S A;  4C2M A;  2R7V A;  2R7X A;  2PFV A;  3NS4 A;  4OD5 A;  2B1E A;  4IRV A;  2R7R A;  3VTI A;  3DU6 A;  2A2F X;  4OD4 A;  2R7U A;  2R7T A;  3DU5 A;  2R7W A;  2R7Q A;  3KYL A;  4DVY P;  2B3W A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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