2FJI1

Crystal structure of the c-terminal domain of the exocyst subunit sec6p
Total Genus 167
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
167
sequence length
399
structure length
399
Chain Sequence
GSHMGDKEKETLFKDYLNLIVVKMTEWIGNLEKAEFDVFLERSTPPHSDSDGLLFLDGTKTCFQMFTQQVEVAAGTNQAKILVGVVERFSDLLTKRQKNWISKISEEIKKQINYNHKYDIDPESITPEDECPGGLVEYLIAVSNDQMKAADYAVAISSKYGKLVSKVYEKQITNHLEGTLDGFAEVAQCSSLGLITLMFDDLRKPYQEIFSKTWYMGSQAQQIADTLDEYLLDIKPQMNSVLFVNFIDNVIGETIIKFLTALSFEHSFKNKNNKFLEAMKRDFEIFYQLFVKVLDGNESKDTLITQNFTVMEFFMDLSCEPIDSILDIWQKYLEVYWDSRIDLLVGILKCRKDVSSSERKKIVQQATEMLHEYRRNMEANGVDREPTLMRRFVLEFEKQ
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title The structure of the exocyst subunit Sec6p defines a conserved architecture with diverse roles.
pubmed doi rcsb
source organism Saccharomyces cerevisiae
molecule tags Endocytosis/exocytosis
molecule keywords Exocyst complex component SEC6
total genus 167
structure length 399
sequence length 399
chains with identical sequence 2
ec nomenclature
pdb deposition date 2006-01-02
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.357.50 Mainly Alpha Orthogonal Bundle Tetracycline Repressor; domain 2 Tetracycline Repressor; domain 2 2fji101
1.10.357.70 Mainly Alpha Orthogonal Bundle Tetracycline Repressor; domain 2 Tetracycline Repressor; domain 2 2fji102
3SWHA 2FJI1
chains in the Genus database with same CATH superfamily
5EZHA 2JJ7A 2GFNA 2Q24A 2GUHA 3HTAA 1QPIA 3FK7A 2A2FX 3RD3A 4ICHA 5EZGA 4U9NA 3VP5A 5FKKA 4GCTA 3O8GA 3VW2A 5FKNA 2VKEA 3ANPA 5FKLA 4M3BA 2ID6A 2XGDA 1U9OA 4C2MA 3LWJA 5EYRA 4NN1A 4KWAA 1BJZA 2ZOZA 3G1LA 2X9DA 3ZQGA 2NX4A 3EUPA 4WIBA 5J1RA 3LOCA 5FKMA 3B6AA 3O60A 3VVYA 1UI5A 3DPJA 3T6NA 3VTIA 3VUQA 3BQYA 2G3BA 5IP6A 2HQ5A 3ANGA 3VW1A 4M3FA 2WUIA 3EGQA 3SFIA 3HGYA 3DU5A 3DU6A 4JYKA 4HKUA 4I6ZA 1A6IA 2HKUA 3CDLA 2UXUA 3BR1A 5EFYA 4UDSA 3BTIA 3BTLA 5FHPA 3RH2A 5CXIA 5DAJA 3BJBA 4GCKA 2NP3A 4V2GA 2QTQA 3GZIA 3IH2A 2REKA 3O8HA 2TCTA 3BHQA 4PXIA 4OD4A 3QQAA 5J1UA 5F0FA 2QCOA 5K7HA 3VIBA 1UI6A 4MK6A 2PBXA 5FGLA 2OERA 1ZKGA 4GFKA 3FK6A 3VVXA 3NXCA 3LJLA 2RHAA 2IEKA 1RPWA 2X6OA 2NS7A 1Z0XA 3CRJA 2R7TA 4DW6A 4XK4A 5CXGA 3TP0A 3AQSA 3E7QA 3Q0WA 4D5FA 1JTXA 2G7SA 2O7TA 5C4YA 1JUMA 3Q0UA 2FJI1 3IH4A 3SDGA 3ZQIA 3KKCA 2UXHA 2DG7A 3NPIA 4JNNA 3NS4A 2R7UA 2XRLA 3LSPA 4M3EA 2R7RA 2NP5A 4AF5A 3FRQA 2PZ9A 2D6YA 3NRGA 2EH3A 2FD5A 3ZQLA 2R7XA 3ZQHA 3BT9A 2XDNA 3ON4A 2NS8A 3QKXA 3CJDA 2R7VA 3C07A 1QVUA 3VW0A 4M3DA 5F04A 2R7QA 3VOKA 2RASA 3LHQA 5K7ZA 3ZQFA 2ZY9A 2OI8A 2WV1A 1JT0A 3C2BA 5J1YA 3B81A 2ZCMA 3S5RA 3BQZA 3BR2A 2QOPA 1RKWA 4IRVA 3BR3A 3TP3A 3COLA 4MXMA 4X1EA 3NNRA 4MO7A 2ZCXA 2FX0A 1RKTA 2F07A 1JT6A 2HYJA 3QPLA 3LSJA 3BR0A 2OPTA 2B1EA 4NELA 1JUSA 2XB5A 2GBYA 5IPAA 3G1MA 3WHBA 3G56A 5F1JA 4DVYP 2ID3A 2V57A 3AQTA 3IH3A 5CW8A 2G7LA 5D18A 3DEWA 3HTIA 2JK3A 2Y30A 3KKDA 2G0EA 2O7OA 5J3LA 2DG8A 2R7WA 4ME9A 5AQCA 2HXIA 5F27A 4G12A 3Q3SA 2IU5A 3KYLA 3VPRA 3CCYA 2XPVA 4L62A 5F0HA 3HTHA 2VPRA 2QIBA 2UXPA 3IUVA 3V6GA 2G7GA 3HE0A 2UXOA 3BTCA 2WGBA 2FJ1A 2XGEA 3SWHA 4JL3A 3BTJA 1SGMA 2YVHA 3FHNA 2DTZA 4ACIA 2Y2ZA 5HSZA 2ZOYA 3V78A 2R7OA 3QBMA 4OD5A 2IAIA 2W53A 3ON2A 4YZEA 2QWTA 4B1RA 4GFLA 2ZB9A 2YVXA 3HGGA 3F1BA 3NI7A 2B3WA 2TRTA 3HIMA 5GPAA 2XPUA 3BCGA 4JKZA 1VI0A 4D7MA 3P9TA 5D19A 5D1RA 2VKVA 4GCLA 2ZCNA 3DCFA 1JUPA 2XGCA 4W97A 3BR5A 5K58A 1ORKA 3G1OA 3QPSA 3Q0VA 2GENA 3WHCA 2FQ4A 5K7FA 3PM1A 1U9NA 2IBDA 2QKOA 4I76A 2RAEA 2UXIA 5H9TA 3GEUA 5HAWA 3KNWA 3K8PC 3BRUA 4CGRA 2PFVA 5F0CA 5FKOA 3CWRA 5IOZA 1Z77A 2HXOA 5FMPA 2I10A 2XPWA 3JSJA 2YVEA 5CQGA 3KZ9A 4U9LA 3PASA 3G7RA 4M3GA 5HBUA 3VVZA 4AC6A 3MNLA 5GP9A 5IOYA 5F08A 4D7NA 4W1UA 1T56A 3B6CA 1JTYA 3BNIA 4D5CA 3PPBA 4ABZA 4AC0A 5GPCA 4B3AA 2Y31A 4V2FA 1T33A 3MVPA 2HYTA 3BR6A 1QVTA 4AUXA 3LSRA 3FIWA 2FBQA 3VOXA 1ZK8A 3HTJA 3F0CA 2OF7A 2R7SA
chains in the Genus database with same CATH topology
2R7OA 2R7QA 4OD5A 3K8PC 3DU5A 3DU6A 2A2FX 2R7XA 2PFVA 2FJI1 4OD4A 2B1EA 3SWHA 2R7WA 2R7TA 4DVYP 3NS4A 2B3WA 3FHNA 2R7UA 4IRVA 3VTIA 3KYLA 2R7VA 2R7RA 4C2MA 2R7SA 5CQGA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3SWH A;  2FJI 1; 
#chains in the Genus database with same CATH topology
 5EZH A;  2JJ7 A;  2GFN A;  2Q24 A;  2GUH A;  3HTA A;  1QPI A;  3FK7 A;  2A2F X;  3RD3 A;  4ICH A;  5EZG A;  4U9N A;  3VP5 A;  5FKK A;  4GCT A;  3O8G A;  3VW2 A;  5FKN A;  2VKE A;  3ANP A;  5FKL A;  4M3B A;  2ID6 A;  2XGD A;  1U9O A;  4C2M A;  3LWJ A;  5EYR A;  4NN1 A;  4KWA A;  1BJZ A;  2ZOZ A;  3G1L A;  2X9D A;  3ZQG A;  2NX4 A;  3EUP A;  4WIB A;  5J1R A;  3LOC A;  5FKM A;  3B6A A;  3O60 A;  3VVY A;  1UI5 A;  3DPJ A;  3T6N A;  3VTI A;  3VUQ A;  3BQY A;  2G3B A;  5IP6 A;  2HQ5 A;  3ANG A;  3VW1 A;  4M3F A;  2WUI A;  3EGQ A;  3SFI A;  3HGY A;  3DU5 A;  3DU6 A;  4JYK A;  4HKU A;  4I6Z A;  1A6I A;  2HKU A;  3CDL A;  2UXU A;  3BR1 A;  5EFY A;  4UDS A;  3BTI A;  3BTL A;  5FHP A;  3RH2 A;  5CXI A;  5DAJ A;  3BJB A;  4GCK A;  2NP3 A;  4V2G A;  2QTQ A;  3GZI A;  3IH2 A;  2REK A;  3O8H A;  2TCT A;  3BHQ A;  4PXI A;  4OD4 A;  3QQA A;  5J1U A;  5F0F A;  2QCO A;  5K7H A;  3VIB A;  1UI6 A;  4MK6 A;  2PBX A;  5FGL A;  2OER A;  1ZKG A;  4GFK A;  3FK6 A;  3VVX A;  3NXC A;  3LJL A;  2RHA A;  2IEK A;  1RPW A;  2X6O A;  2NS7 A;  1Z0X A;  3CRJ A;  2R7T A;  4DW6 A;  4XK4 A;  5CXG A;  3TP0 A;  3AQS A;  3E7Q A;  3Q0W A;  4D5F A;  1JTX A;  2G7S A;  2O7T A;  5C4Y A;  1JUM A;  3Q0U A;  2FJI 1;  3IH4 A;  3SDG A;  3ZQI A;  3KKC A;  2UXH A;  2DG7 A;  3NPI A;  4JNN A;  3NS4 A;  2R7U A;  2XRL A;  3LSP A;  4M3E A;  2R7R A;  2NP5 A;  4AF5 A;  3FRQ A;  2PZ9 A;  2D6Y A;  3NRG A;  2EH3 A;  2FD5 A;  3ZQL A;  2R7X A;  3ZQH A;  3BT9 A;  2XDN A;  3ON4 A;  2NS8 A;  3QKX A;  3CJD A;  2R7V A;  3C07 A;  1QVU A;  3VW0 A;  4M3D A;  5F04 A;  2R7Q A;  3VOK A;  2RAS A;  3LHQ A;  5K7Z A;  3ZQF A;  2ZY9 A;  2OI8 A;  2WV1 A;  1JT0 A;  3C2B A;  5J1Y A;  3B81 A;  2ZCM A;  3S5R A;  3BQZ A;  3BR2 A;  2QOP A;  1RKW A;  4IRV A;  3BR3 A;  3TP3 A;  3COL A;  4MXM A;  4X1E A;  3NNR A;  4MO7 A;  2ZCX A;  2FX0 A;  1RKT A;  2F07 A;  1JT6 A;  2HYJ A;  3QPL A;  3LSJ A;  3BR0 A;  2OPT A;  2B1E A;  4NEL A;  1JUS A;  2XB5 A;  2GBY A;  5IPA A;  3G1M A;  3WHB A;  3G56 A;  5F1J A;  4DVY P;  2ID3 A;  2V57 A;  3AQT A;  3IH3 A;  5CW8 A;  2G7L A;  5D18 A;  3DEW A;  3HTI A;  2JK3 A;  2Y30 A;  3KKD A;  2G0E A;  2O7O A;  5J3L A;  2DG8 A;  2R7W A;  4ME9 A;  5AQC A;  2HXI A;  5F27 A;  4G12 A;  3Q3S A;  2IU5 A;  3KYL A;  3VPR A;  3CCY A;  2XPV A;  4L62 A;  5F0H A;  3HTH A;  2VPR A;  2QIB A;  2UXP A;  3IUV A;  3V6G A;  2G7G A;  3HE0 A;  2UXO A;  3BTC A;  2WGB A;  2FJ1 A;  2XGE A;  3SWH A;  4JL3 A;  3BTJ A;  1SGM A;  2YVH A;  3FHN A;  2DTZ A;  4ACI A;  2Y2Z A;  5HSZ A;  2ZOY A;  3V78 A;  2R7O A;  3QBM A;  4OD5 A;  2IAI A;  2W53 A;  3ON2 A;  4YZE A;  2QWT A;  4B1R A;  4GFL A;  2ZB9 A;  2YVX A;  3HGG A;  3F1B A;  3NI7 A;  2B3W A;  2TRT A;  3HIM A;  5GPA A;  2XPU A;  3BCG A;  4JKZ A;  1VI0 A;  4D7M A;  3P9T A;  5D19 A;  5D1R A;  2VKV A;  4GCL A;  2ZCN A;  3DCF A;  1JUP A;  2XGC A;  4W97 A;  3BR5 A;  5K58 A;  1ORK A;  3G1O A;  3QPS A;  3Q0V A;  2GEN A;  3WHC A;  2FQ4 A;  5K7F A;  3PM1 A;  1U9N A;  2IBD A;  2QKO A;  4I76 A;  2RAE A;  2UXI A;  5H9T A;  3GEU A;  5HAW A;  3KNW A;  3K8P C;  3BRU A;  4CGR A;  2PFV A;  5F0C A;  5FKO A;  3CWR A;  5IOZ A;  1Z77 A;  2HXO A;  5FMP A;  2I10 A;  2XPW A;  3JSJ A;  2YVE A;  5CQG A;  3KZ9 A;  4U9L A;  3PAS A;  3G7R A;  4M3G A;  5HBU A;  3VVZ A;  4AC6 A;  3MNL A;  5GP9 A;  5IOY A;  5F08 A;  4D7N A;  4W1U A;  1T56 A;  3B6C A;  1JTY A;  3BNI A;  4D5C A;  3PPB A;  4ABZ A;  4AC0 A;  5GPC A;  4B3A A;  2Y31 A;  4V2F A;  1T33 A;  3MVP A;  2HYT A;  3BR6 A;  1QVT A;  4AUX A;  3LSR A;  3FIW A;  2FBQ A;  3VOX A;  1ZK8 A;  3HTJ A;  3F0C A;  2OF7 A;  2R7S A; 
#chains in the Genus database with same CATH homology
 2R7O A;  2R7Q A;  4OD5 A;  3K8P C;  3DU5 A;  3DU6 A;  2A2F X;  2R7X A;  2PFV A;  2FJI 1;  4OD4 A;  2B1E A;  3SWH A;  2R7W A;  2R7T A;  4DVY P;  3NS4 A;  2B3W A;  3FHN A;  2R7U A;  4IRV A;  3VTI A;  3KYL A;  2R7V A;  2R7R A;  4C2M A;  2R7S A;  5CQG A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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