2FJI1

Crystal structure of the c-terminal domain of the exocyst subunit sec6p
Total Genus 167
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
167
sequence length
399
structure length
399
Chain Sequence
GSHMGDKEKETLFKDYLNLIVVKMTEWIGNLEKAEFDVFLERSTPPHSDSDGLLFLDGTKTCFQMFTQQVEVAAGTNQAKILVGVVERFSDLLTKRQKNWISKISEEIKKQINYNHKYDIDPESITPEDECPGGLVEYLIAVSNDQMKAADYAVAISSKYGKLVSKVYEKQITNHLEGTLDGFAEVAQCSSLGLITLMFDDLRKPYQEIFSKTWYMGSQAQQIADTLDEYLLDIKPQMNSVLFVNFIDNVIGETIIKFLTALSFEHSFKNKNNKFLEAMKRDFEIFYQLFVKVLDGNESKDTLITQNFTVMEFFMDLSCEPIDSILDIWQKYLEVYWDSRIDLLVGILKCRKDVSSSERKKIVQQATEMLHEYRRNMEANGVDREPTLMRRFVLEFEKQ
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title The structure of the exocyst subunit Sec6p defines a conserved architecture with diverse roles.
pubmed doi rcsb
source organism Saccharomyces cerevisiae
molecule tags Endocytosis/exocytosis
molecule keywords Exocyst complex component SEC6
total genus 167
structure length 399
sequence length 399
chains with identical sequence 2
ec nomenclature
pdb deposition date 2006-01-02
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.357.50 Mainly Alpha Orthogonal Bundle Tetracycline Repressor; domain 2 Tetracycline Repressor; domain 2 2fji101
1.10.357.70 Mainly Alpha Orthogonal Bundle Tetracycline Repressor; domain 2 Tetracycline Repressor; domain 2 2fji102
2FJI1 3SWHA
chains in the Genus database with same CATH superfamily
2GBYA 5F04A 4NELA 2ID6A 3K8PC 1QPIA 5F0HA 2VKEA 3KNWA 5HBUA 2R7TA 3BTLA 3BTIA 1T56A 4MK6A 2FD5A 5EZGA 4U9NA 3BQYA 2XRLA 4D5CA 1ZKGA 3VIBA 4JYKA 5F0CA 3SWHA 4PXIA 4JKZA 1JTXA 3HE0A 2OF7A 5FHPA 2ID3A 3VW1A 3RD3A 3KKCA 2VPRA 3PASA 4M3BA 4D7MA 3BR0A 3SFIA 3LSRA 3F0CA 2JK3A 1BJZA 2UXPA 2DTZA 5F27A 2XGCA 2PBXA 5F1JA 3EUPA 2OPTA 3ZQLA 3GZIA 2QOPA 3LJLA 5J1YA 3DCFA 3LOCA 4IRVA 2ZCMA 3VVYA 3ON4A 4ACIA 4MO7A 4GFLA 5FKLA 3PPBA 3GEUA 4I76A 2XPWA 3VOKA 4L62A 3RH2A 2TRTA 3VUQA 2W53A 5F0FA 1RKWA 5EFYA 3FK6A 3HTIA 3WHBA 5J3LA 3B6CA 2UXUA 3VVXA 3V78A 4HKUA 3KKDA 4OD5A 3BJBA 5FGLA 3FRQA 4AC0A 2B3WA 3VP5A 3CJDA 4GCKA 3CWRA 4C2MA 2R7UA 3BQZA 2ZOZA 3O8GA 3G56A 3CCYA 2G3BA 2X9DA 1JT6A 4U9LA 2X6OA 3V6GA 3T6NA 3C07A 4I6ZA 3VW0A 3IUVA 4UDSA 5D19A 2GUHA 3TP0A 4GCLA 4AUXA 2NX4A 3Q3SA 4D5FA 2B1EA 2NP5A 2RHAA 1T33A 2IBDA 3Q0UA 2I10A 4AF5A 2UXOA 2FBQA 4DVYP 4B3AA 4X1EA 3NXCA 4AC6A 2QKOA 3LHQA 5IPAA 1UI6A 2PFVA 3F1BA 5D18A 2HYJA 5H9TA 1JUSA 4V2FA 2NS8A 2TCTA 5CW8A 1UI5A 3ANPA 3MVPA 3NS4A 5FMPA 5F08A 2A2FX 3HTJA 1JUMA 5FKMA 3QBMA 3EGQA 5AQCA 2DG8A 3NRGA 3QQAA 2ZB9A 5J1UA 2OI8A 1RPWA 3AQSA 2HKUA 3VTIA 2XPVA 2G7SA 5CXGA 2GENA 3IH4A 2ZOYA 2EH3A 3Q0WA 3BT9A 5IOZA 2FQ4A 4OD4A 1A6IA 5CXIA 4NN1A 5HAWA 3SDGA 1U9OA 1Z0XA 2JJ7A 3BNIA 2HXIA 2XGEA 3VPRA 4ICHA 2IEKA 4GCTA 2HYTA 5FKKA 3COLA 5CQGA 2HXOA 3C2BA 5IP6A 3O60A 3MNLA 2IU5A 2R7OA 5K7FA 3FHNA 4DW6A 3BR6A 3QPLA 4GFKA 1SGMA 3BCGA 5FKOA 2QTQA 2G7GA 3E7QA 2YVXA 2YVHA 3ZQFA 4ABZA 5EZHA 5FKNA 2VKVA 4W1UA 3Q0VA 1Z77A 3AQTA 4W97A 5J1RA 3HTAA 3B81A 2DG7A 3DU5A 3NNRA 2XGDA 2G7LA 2FX0A 4YZEA 3DU6A 3VOXA 3S5RA 2FJI1 3ZQHA 3HTHA 2WUIA 5DAJA 2RASA 3P9TA 5K58A 5EYRA 3BTCA 2R7WA 1JUPA 2WGBA 2NP3A 3TP3A 2XDNA 3CDLA 2Q24A 2R7SA 3HGYA 4CGRA 4JL3A 1RKTA 2Y30A 2UXHA 2F07A 3ANGA 2QWTA 5D1RA 5C4YA 2O7TA 2GFNA 3BR1A 3DEWA 3LWJA 3ZQGA 5GPCA 3VW2A 3IH3A 2IAIA 4MXMA 2UXIA 2NS7A 3WHCA 4V2GA 1QVTA 3JSJA 2REKA 1ORKA 2XB5A 2QIBA 3VVZA 1JTYA 3LSJA 3B6AA 5K7HA 2V57A 3G1MA 3ZQIA 2HQ5A 3FIWA 5K7ZA 3QPSA 2R7VA 2G0EA 4M3FA 5GPAA 2R7QA 2R7XA 1VI0A 3HGGA 2R7RA 3PM1A 4D7NA 2XPUA 3O8HA 3G7RA 5HSZA 4M3GA 4M3EA 3G1LA 3NPIA 4XK4A 2ZCNA 3HIMA 3CRJA 4G12A 2PZ9A 2QCOA 3G1OA 1U9NA 2Y31A 2D6YA 4JNNA 2OERA 2ZCXA 5GP9A 4KWAA 4B1RA 2O7OA 3KYLA 2Y2ZA 3IH2A 4M3DA 3BRUA 2RAEA 3BR2A 3BR5A 2ZY9A 3BTJA 5IOYA 3NI7A 1QVUA 2FJ1A 3LSPA 3QKXA 3BHQA 3FK7A 4ME9A 2WV1A 3DPJA 3KZ9A 1ZK8A 1JT0A 3ON2A 4WIBA 2YVEA 3BR3A
chains in the Genus database with same CATH topology
3VTIA 3KYLA 2FJI1 3NS4A 3SWHA 2R7VA 4DVYP 2R7QA 2R7XA 2R7RA 4OD5A 4IRVA 3K8PC 5CQGA 2A2FX 4OD4A 2R7TA 2R7WA 2B3WA 2PFVA 2R7OA 3DU6A 3FHNA 3DU5A 2B1EA 2R7SA 4C2MA 2R7UA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2FJI 1;  3SWH A; 
#chains in the Genus database with same CATH topology
 2GBY A;  5F04 A;  4NEL A;  2ID6 A;  3K8P C;  1QPI A;  5F0H A;  2VKE A;  3KNW A;  5HBU A;  2R7T A;  3BTL A;  3BTI A;  1T56 A;  4MK6 A;  2FD5 A;  5EZG A;  4U9N A;  3BQY A;  2XRL A;  4D5C A;  1ZKG A;  3VIB A;  4JYK A;  5F0C A;  3SWH A;  4PXI A;  4JKZ A;  1JTX A;  3HE0 A;  2OF7 A;  5FHP A;  2ID3 A;  3VW1 A;  3RD3 A;  3KKC A;  2VPR A;  3PAS A;  4M3B A;  4D7M A;  3BR0 A;  3SFI A;  3LSR A;  3F0C A;  2JK3 A;  1BJZ A;  2UXP A;  2DTZ A;  5F27 A;  2XGC A;  2PBX A;  5F1J A;  3EUP A;  2OPT A;  3ZQL A;  3GZI A;  2QOP A;  3LJL A;  5J1Y A;  3DCF A;  3LOC A;  4IRV A;  2ZCM A;  3VVY A;  3ON4 A;  4ACI A;  4MO7 A;  4GFL A;  5FKL A;  3PPB A;  3GEU A;  4I76 A;  2XPW A;  3VOK A;  4L62 A;  3RH2 A;  2TRT A;  3VUQ A;  2W53 A;  5F0F A;  1RKW A;  5EFY A;  3FK6 A;  3HTI A;  3WHB A;  5J3L A;  3B6C A;  2UXU A;  3VVX A;  3V78 A;  4HKU A;  3KKD A;  4OD5 A;  3BJB A;  5FGL A;  3FRQ A;  4AC0 A;  2B3W A;  3VP5 A;  3CJD A;  4GCK A;  3CWR A;  4C2M A;  2R7U A;  3BQZ A;  2ZOZ A;  3O8G A;  3G56 A;  3CCY A;  2G3B A;  2X9D A;  1JT6 A;  4U9L A;  2X6O A;  3V6G A;  3T6N A;  3C07 A;  4I6Z A;  3VW0 A;  3IUV A;  4UDS A;  5D19 A;  2GUH A;  3TP0 A;  4GCL A;  4AUX A;  2NX4 A;  3Q3S A;  4D5F A;  2B1E A;  2NP5 A;  2RHA A;  1T33 A;  2IBD A;  3Q0U A;  2I10 A;  4AF5 A;  2UXO A;  2FBQ A;  4DVY P;  4B3A A;  4X1E A;  3NXC A;  4AC6 A;  2QKO A;  3LHQ A;  5IPA A;  1UI6 A;  2PFV A;  3F1B A;  5D18 A;  2HYJ A;  5H9T A;  1JUS A;  4V2F A;  2NS8 A;  2TCT A;  5CW8 A;  1UI5 A;  3ANP A;  3MVP A;  3NS4 A;  5FMP A;  5F08 A;  2A2F X;  3HTJ A;  1JUM A;  5FKM A;  3QBM A;  3EGQ A;  5AQC A;  2DG8 A;  3NRG A;  3QQA A;  2ZB9 A;  5J1U A;  2OI8 A;  1RPW A;  3AQS A;  2HKU A;  3VTI A;  2XPV A;  2G7S A;  5CXG A;  2GEN A;  3IH4 A;  2ZOY A;  2EH3 A;  3Q0W A;  3BT9 A;  5IOZ A;  2FQ4 A;  4OD4 A;  1A6I A;  5CXI A;  4NN1 A;  5HAW A;  3SDG A;  1U9O A;  1Z0X A;  2JJ7 A;  3BNI A;  2HXI A;  2XGE A;  3VPR A;  4ICH A;  2IEK A;  4GCT A;  2HYT A;  5FKK A;  3COL A;  5CQG A;  2HXO A;  3C2B A;  5IP6 A;  3O60 A;  3MNL A;  2IU5 A;  2R7O A;  5K7F A;  3FHN A;  4DW6 A;  3BR6 A;  3QPL A;  4GFK A;  1SGM A;  3BCG A;  5FKO A;  2QTQ A;  2G7G A;  3E7Q A;  2YVX A;  2YVH A;  3ZQF A;  4ABZ A;  5EZH A;  5FKN A;  2VKV A;  4W1U A;  3Q0V A;  1Z77 A;  3AQT A;  4W97 A;  5J1R A;  3HTA A;  3B81 A;  2DG7 A;  3DU5 A;  3NNR A;  2XGD A;  2G7L A;  2FX0 A;  4YZE A;  3DU6 A;  3VOX A;  3S5R A;  2FJI 1;  3ZQH A;  3HTH A;  2WUI A;  5DAJ A;  2RAS A;  3P9T A;  5K58 A;  5EYR A;  3BTC A;  2R7W A;  1JUP A;  2WGB A;  2NP3 A;  3TP3 A;  2XDN A;  3CDL A;  2Q24 A;  2R7S A;  3HGY A;  4CGR A;  4JL3 A;  1RKT A;  2Y30 A;  2UXH A;  2F07 A;  3ANG A;  2QWT A;  5D1R A;  5C4Y A;  2O7T A;  2GFN A;  3BR1 A;  3DEW A;  3LWJ A;  3ZQG A;  5GPC A;  3VW2 A;  3IH3 A;  2IAI A;  4MXM A;  2UXI A;  2NS7 A;  3WHC A;  4V2G A;  1QVT A;  3JSJ A;  2REK A;  1ORK A;  2XB5 A;  2QIB A;  3VVZ A;  1JTY A;  3LSJ A;  3B6A A;  5K7H A;  2V57 A;  3G1M A;  3ZQI A;  2HQ5 A;  3FIW A;  5K7Z A;  3QPS A;  2R7V A;  2G0E A;  4M3F A;  5GPA A;  2R7Q A;  2R7X A;  1VI0 A;  3HGG A;  2R7R A;  3PM1 A;  4D7N A;  2XPU A;  3O8H A;  3G7R A;  5HSZ A;  4M3G A;  4M3E A;  3G1L A;  3NPI A;  4XK4 A;  2ZCN A;  3HIM A;  3CRJ A;  4G12 A;  2PZ9 A;  2QCO A;  3G1O A;  1U9N A;  2Y31 A;  2D6Y A;  4JNN A;  2OER A;  2ZCX A;  5GP9 A;  4KWA A;  4B1R A;  2O7O A;  3KYL A;  2Y2Z A;  3IH2 A;  4M3D A;  3BRU A;  2RAE A;  3BR2 A;  3BR5 A;  2ZY9 A;  3BTJ A;  5IOY A;  3NI7 A;  1QVU A;  2FJ1 A;  3LSP A;  3QKX A;  3BHQ A;  3FK7 A;  4ME9 A;  2WV1 A;  3DPJ A;  3KZ9 A;  1ZK8 A;  1JT0 A;  3ON2 A;  4WIB A;  2YVE A;  3BR3 A; 
#chains in the Genus database with same CATH homology
 3VTI A;  3KYL A;  2FJI 1;  3NS4 A;  3SWH A;  2R7V A;  4DVY P;  2R7Q A;  2R7X A;  2R7R A;  4OD5 A;  4IRV A;  3K8P C;  5CQG A;  2A2F X;  4OD4 A;  2R7T A;  2R7W A;  2B3W A;  2PFV A;  2R7O A;  3DU6 A;  3FHN A;  3DU5 A;  2B1E A;  2R7S A;  4C2M A;  2R7U A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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