2FJI1

Crystal structure of the c-terminal domain of the exocyst subunit sec6p
Total Genus 167
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
167
sequence length
399
structure length
399
Chain Sequence
b'GSHMGDKEKETLFKDYLNLIVVKMTEWIGNLEKAEFDVFLERSTPPHSDSDGLLFLDGTKTCFQMFTQQVEVAAGTNQAKILVGVVERFSDLLTKRQKNWISKISEEIKKQINYNHKYDIDPESITPEDECPGGLVEYLIAVSNDQMKAADYAVAISSKYGKLVSKVYEKQITNHLEGTLDGFAEVAQCSSLGLITLMFDDLRKPYQEIFSKTWYMGSQAQQIADTLDEYLLDIKPQMNSVLFVNFIDNVIGETIIKFLTALSFEHSFKNKNNKFLEAMKRDFEIFYQLFVKVLDGNESKDTLITQNFTVMEFFMDLSCEPIDSILDIWQKYLEVYWDSRIDLLVGILKCRKDVSSSERKKIVQQATEMLHEYRRNMEANGVDREPTLMRRFVLEFEKQ'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Exocyst complex component SEC6
publication title The structure of the exocyst subunit Sec6p defines a conserved architecture with diverse roles.
pubmed doi rcsb
source organism Saccharomyces cerevisiae
molecule tags Endocytosis/exocytosis
total genus 167
structure length 399
sequence length 399
chains with identical sequence 2
ec nomenclature
pdb deposition date 2006-01-02
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.357.50 Mainly Alpha Orthogonal Bundle Tetracycline Repressor; domain 2 Tetracycline Repressor; domain 2 2fji101
1.10.357.70 Mainly Alpha Orthogonal Bundle Tetracycline Repressor; domain 2 Tetracycline Repressor; domain 2 2fji102
2FJI1 3SWHA
chains in the Genus database with same CATH superfamily
2Y2ZA 3ZQGA 5D19A 2ZY9A 2XGCA 3AQSA 3ZQIA 2XB5A 5FGLA 2R7OA 2JK3A 3NRGA 3VTIA 2UXIA 4ABZA 2NX4A 2YVHA 4NN1A 5F0FA 3WHCA 3ON4A 3GZIA 4CGRA 3FK7A 2ZB9A 3K8PC 3Q0VA 5F04A 2XPWA 1JTXA 5FHPA 2R7RA 3B6AA 5HAWA 3LSPA 2O7TA 2HQ5A 2G7SA 2YVXA 3IUVA 3S5RA 3NNRA 4D7NA 2FX0A 1UI6A 2YVEA 2F07A 4M3GA 5IP6A 5K7HA 2R7TA 2G3BA 3LJLA 1JUPA 4DW6A 3VIBA 1JTYA 1QVUA 3Q3SA 3ANGA 5DAJA 2ZCMA 5FKMA 3VPRA 2QTQA 3PPBA 2B1EA 2QOPA 3SWHA 5FKKA 2XGDA 3LWJA 4ACIA 4JYKA 4M3BA 1U9NA 5IOZA 3HTAA 1VI0A 4AC6A 3KKCA 3QBMA 3O8GA 4UDSA 2DTZA 3O60A 3VW1A 2QIBA 3HGGA 4MO7A 3ZQHA 3BT9A 2GUHA 1QPIA 5C4YA 3VVZA 2FJ1A 5K7FA 4M3EA 1QVTA 5IOYA 3HTJA 3G1OA 4X1EA 2QWTA 2TCTA 2NP5A 2ZOZA 2HYTA 2R7UA 2W53A 3COLA 2UXHA 3CJDA 3QQAA 4KWAA 3V78A 4AF5A 3KKDA 2G0EA 5D1RA 1Z0XA 1BJZA 2HXOA 5GPCA 4AC0A 3PASA 2OF7A 2WGBA 3O8HA 2DG7A 4ME9A 3QPLA 5GPAA 2RHAA 5FKLA 2G7LA 3B81A 3ZQFA 3VVYA 2NS8A 3SFIA 3LSJA 3QKXA 2IBDA 3KZ9A 2ZOYA 5FMPA 4V2FA 3WHBA 3BHQA 3G1LA 3VW0A 1RKTA 3BR2A 5GP9A 3KNWA 5FKNA 4B3AA 5FKOA 2GFNA 2I10A 4U9NA 5F27A 2ID3A 1JUMA 2A2FX 4G12A 5K7ZA 4C2MA 5F1JA 3DPJA 3FK6A 2DG8A 3RD3A 5EYRA 3DU6A 2HYJA 2Y31A 2NP3A 5CW8A 3DCFA 3PM1A 3NPIA 4GCLA 3CRJA 4GCKA 4XK4A 3CCYA 2Q24A 1SGMA 2EH3A 2UXPA 3C07A 5EZHA 3ZQLA 2QCOA 1UI5A 1A6IA 1JUSA 1JT0A 3TP3A 4M3DA 2IAIA 2ZCNA 3BR5A 4IRVA 2WV1A 4M3FA 3HGYA 3LHQA 4V2GA 2ID6A 3JSJA 2VKEA 2PZ9A 3TP0A 2TRTA 4U9LA 5EZGA 3IH3A 3DU5A 3HE0A 4HKUA 3LOCA 3G1MA 2PBXA 4JNNA 3V6GA 3VOKA 2R7XA 2QKOA 3BNIA 3RH2A 2VKVA 3BQYA 5J1RA 2Y30A 2OPTA 4GCTA 3VVXA 3IH4A 3ANPA 4PXIA 2WUIA 4JL3A 3B6CA 3FHNA 3NI7A 3FIWA 2GBYA 3Q0UA 4MK6A 3BRUA 3SDGA 1JT6A 1T56A 1T33A 3LSRA 1RKWA 2GENA 2JJ7A 2RAEA 4OD4A 4L62A 5HBUA 3CWRA 5AQCA 5F08A 2XGEA 3P9TA 5CXIA 3C2BA 3HTHA 1Z77A 5F0HA 5J1YA 4I76A 4NELA 2V57A 3HIMA 4D7MA 3EGQA 2VPRA 4ICHA 4I6ZA 2R7WA 3DEWA 2FBQA 2X9DA 3NS4A 5F0CA 3BJBA 5D18A 3T6NA 2HXIA 2X6OA 3MNLA 1U9OA 2XRLA 3BTCA 4DVYP 3NXCA 2HKUA 2XPUA 3VUQA 2OI8A 3F1BA 5CXGA 3IH2A 3BR3A 2O7OA 4WIBA 3QPSA 3BCGA 3VW2A 2D6YA 5IPAA 2OERA 3BQZA 2UXOA 2XPVA 3HTIA 4MXMA 3BTLA 2PFVA 2FD5A 3BR0A 5K58A 2RASA 1ZKGA 4D5FA 3BR6A 4YZEA 4GFLA 4W1UA 3VOXA 4AUXA 2FQ4A 2B3WA 3G7RA 3E7QA 3CDLA 3G56A 4W97A 4JKZA 5J3LA 1ORKA 3FRQA 3KYLA 3F0CA 2IEKA 2R7SA 5J1UA 2R7VA 3AQTA 3ON2A 3BR1A 2FJI1 4GFKA 4OD5A 3BTIA 1RPWA 5H9TA 3EUPA 5CQGA 3BTJA 2UXUA 2XDNA 4B1RA 3GEUA 3VP5A 2G7GA 3MVPA 2NS7A 2IU5A 3Q0WA 1ZK8A 5HSZA 2ZCXA 5EFYA 4D5CA 2REKA 2R7QA
chains in the Genus database with same CATH topology
4OD4A 3K8PC 4OD5A 3FHNA 3DU5A 2R7UA 2R7TA 5CQGA 2B3WA 3NS4A 2R7RA 2A2FX 2R7XA 4C2MA 4IRVA 3KYLA 3DU6A 2R7OA 2R7SA 2R7VA 3VTIA 4DVYP 2FJI1 2R7WA 2PFVA 2B1EA 3SWHA 2R7QA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2FJI 1;  3SWH A; 
#chains in the Genus database with same CATH topology
 2Y2Z A;  3ZQG A;  5D19 A;  2ZY9 A;  2XGC A;  3AQS A;  3ZQI A;  2XB5 A;  5FGL A;  2R7O A;  2JK3 A;  3NRG A;  3VTI A;  2UXI A;  4ABZ A;  2NX4 A;  2YVH A;  4NN1 A;  5F0F A;  3WHC A;  3ON4 A;  3GZI A;  4CGR A;  3FK7 A;  2ZB9 A;  3K8P C;  3Q0V A;  5F04 A;  2XPW A;  1JTX A;  5FHP A;  2R7R A;  3B6A A;  5HAW A;  3LSP A;  2O7T A;  2HQ5 A;  2G7S A;  2YVX A;  3IUV A;  3S5R A;  3NNR A;  4D7N A;  2FX0 A;  1UI6 A;  2YVE A;  2F07 A;  4M3G A;  5IP6 A;  5K7H A;  2R7T A;  2G3B A;  3LJL A;  1JUP A;  4DW6 A;  3VIB A;  1JTY A;  1QVU A;  3Q3S A;  3ANG A;  5DAJ A;  2ZCM A;  5FKM A;  3VPR A;  2QTQ A;  3PPB A;  2B1E A;  2QOP A;  3SWH A;  5FKK A;  2XGD A;  3LWJ A;  4ACI A;  4JYK A;  4M3B A;  1U9N A;  5IOZ A;  3HTA A;  1VI0 A;  4AC6 A;  3KKC A;  3QBM A;  3O8G A;  4UDS A;  2DTZ A;  3O60 A;  3VW1 A;  2QIB A;  3HGG A;  4MO7 A;  3ZQH A;  3BT9 A;  2GUH A;  1QPI A;  5C4Y A;  3VVZ A;  2FJ1 A;  5K7F A;  4M3E A;  1QVT A;  5IOY A;  3HTJ A;  3G1O A;  4X1E A;  2QWT A;  2TCT A;  2NP5 A;  2ZOZ A;  2HYT A;  2R7U A;  2W53 A;  3COL A;  2UXH A;  3CJD A;  3QQA A;  4KWA A;  3V78 A;  4AF5 A;  3KKD A;  2G0E A;  5D1R A;  1Z0X A;  1BJZ A;  2HXO A;  5GPC A;  4AC0 A;  3PAS A;  2OF7 A;  2WGB A;  3O8H A;  2DG7 A;  4ME9 A;  3QPL A;  5GPA A;  2RHA A;  5FKL A;  2G7L A;  3B81 A;  3ZQF A;  3VVY A;  2NS8 A;  3SFI A;  3LSJ A;  3QKX A;  2IBD A;  3KZ9 A;  2ZOY A;  5FMP A;  4V2F A;  3WHB A;  3BHQ A;  3G1L A;  3VW0 A;  1RKT A;  3BR2 A;  5GP9 A;  3KNW A;  5FKN A;  4B3A A;  5FKO A;  2GFN A;  2I10 A;  4U9N A;  5F27 A;  2ID3 A;  1JUM A;  2A2F X;  4G12 A;  5K7Z A;  4C2M A;  5F1J A;  3DPJ A;  3FK6 A;  2DG8 A;  3RD3 A;  5EYR A;  3DU6 A;  2HYJ A;  2Y31 A;  2NP3 A;  5CW8 A;  3DCF A;  3PM1 A;  3NPI A;  4GCL A;  3CRJ A;  4GCK A;  4XK4 A;  3CCY A;  2Q24 A;  1SGM A;  2EH3 A;  2UXP A;  3C07 A;  5EZH A;  3ZQL A;  2QCO A;  1UI5 A;  1A6I A;  1JUS A;  1JT0 A;  3TP3 A;  4M3D A;  2IAI A;  2ZCN A;  3BR5 A;  4IRV A;  2WV1 A;  4M3F A;  3HGY A;  3LHQ A;  4V2G A;  2ID6 A;  3JSJ A;  2VKE A;  2PZ9 A;  3TP0 A;  2TRT A;  4U9L A;  5EZG A;  3IH3 A;  3DU5 A;  3HE0 A;  4HKU A;  3LOC A;  3G1M A;  2PBX A;  4JNN A;  3V6G A;  3VOK A;  2R7X A;  2QKO A;  3BNI A;  3RH2 A;  2VKV A;  3BQY A;  5J1R A;  2Y30 A;  2OPT A;  4GCT A;  3VVX A;  3IH4 A;  3ANP A;  4PXI A;  2WUI A;  4JL3 A;  3B6C A;  3FHN A;  3NI7 A;  3FIW A;  2GBY A;  3Q0U A;  4MK6 A;  3BRU A;  3SDG A;  1JT6 A;  1T56 A;  1T33 A;  3LSR A;  1RKW A;  2GEN A;  2JJ7 A;  2RAE A;  4OD4 A;  4L62 A;  5HBU A;  3CWR A;  5AQC A;  5F08 A;  2XGE A;  3P9T A;  5CXI A;  3C2B A;  3HTH A;  1Z77 A;  5F0H A;  5J1Y A;  4I76 A;  4NEL A;  2V57 A;  3HIM A;  4D7M A;  3EGQ A;  2VPR A;  4ICH A;  4I6Z A;  2R7W A;  3DEW A;  2FBQ A;  2X9D A;  3NS4 A;  5F0C A;  3BJB A;  5D18 A;  3T6N A;  2HXI A;  2X6O A;  3MNL A;  1U9O A;  2XRL A;  3BTC A;  4DVY P;  3NXC A;  2HKU A;  2XPU A;  3VUQ A;  2OI8 A;  3F1B A;  5CXG A;  3IH2 A;  3BR3 A;  2O7O A;  4WIB A;  3QPS A;  3BCG A;  3VW2 A;  2D6Y A;  5IPA A;  2OER A;  3BQZ A;  2UXO A;  2XPV A;  3HTI A;  4MXM A;  3BTL A;  2PFV A;  2FD5 A;  3BR0 A;  5K58 A;  2RAS A;  1ZKG A;  4D5F A;  3BR6 A;  4YZE A;  4GFL A;  4W1U A;  3VOX A;  4AUX A;  2FQ4 A;  2B3W A;  3G7R A;  3E7Q A;  3CDL A;  3G56 A;  4W97 A;  4JKZ A;  5J3L A;  1ORK A;  3FRQ A;  3KYL A;  3F0C A;  2IEK A;  2R7S A;  5J1U A;  2R7V A;  3AQT A;  3ON2 A;  3BR1 A;  2FJI 1;  4GFK A;  4OD5 A;  3BTI A;  1RPW A;  5H9T A;  3EUP A;  5CQG A;  3BTJ A;  2UXU A;  2XDN A;  4B1R A;  3GEU A;  3VP5 A;  2G7G A;  3MVP A;  2NS7 A;  2IU5 A;  3Q0W A;  1ZK8 A;  5HSZ A;  2ZCX A;  5EFY A;  4D5C A;  2REK A;  2R7Q A; 
#chains in the Genus database with same CATH homology
 4OD4 A;  3K8P C;  4OD5 A;  3FHN A;  3DU5 A;  2R7U A;  2R7T A;  5CQG A;  2B3W A;  3NS4 A;  2R7R A;  2A2F X;  2R7X A;  4C2M A;  4IRV A;  3KYL A;  3DU6 A;  2R7O A;  2R7S A;  2R7V A;  3VTI A;  4DVY P;  2FJI 1;  2R7W A;  2PFV A;  2B1E A;  3SWH A;  2R7Q A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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