2FJI1

Crystal structure of the c-terminal domain of the exocyst subunit sec6p
Total Genus 167
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
167
sequence length
399
structure length
399
Chain Sequence
GSHMGDKEKETLFKDYLNLIVVKMTEWIGNLEKAEFDVFLERSTPPHSDSDGLLFLDGTKTCFQMFTQQVEVAAGTNQAKILVGVVERFSDLLTKRQKNWISKISEEIKKQINYNHKYDIDPESITPEDECPGGLVEYLIAVSNDQMKAADYAVAISSKYGKLVSKVYEKQITNHLEGTLDGFAEVAQCSSLGLITLMFDDLRKPYQEIFSKTWYMGSQAQQIADTLDEYLLDIKPQMNSVLFVNFIDNVIGETIIKFLTALSFEHSFKNKNNKFLEAMKRDFEIFYQLFVKVLDGNESKDTLITQNFTVMEFFMDLSCEPIDSILDIWQKYLEVYWDSRIDLLVGILKCRKDVSSSERKKIVQQATEMLHEYRRNMEANGVDREPTLMRRFVLEFEKQ
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Endocytosis/exocytosis
molecule keywords Exocyst complex component SEC6
publication title The structure of the exocyst subunit Sec6p defines a conserved architecture with diverse roles.
pubmed doi rcsb
source organism Saccharomyces cerevisiae
total genus 167
structure length 399
sequence length 399
chains with identical sequence 2
ec nomenclature
pdb deposition date 2006-01-02
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.357.50 Mainly Alpha Orthogonal Bundle Tetracycline Repressor; domain 2 Tetracycline Repressor; domain 2 2fji101
1.10.357.70 Mainly Alpha Orthogonal Bundle Tetracycline Repressor; domain 2 Tetracycline Repressor; domain 2 2fji102
2FJI1 3SWHA
chains in the Genus database with same CATH superfamily
3HGGA 3KKDA 3V6GA 2HYJA 2XPVA 4ME9A 4OD4A 5FKOA 3GZIA 1RKTA 2OF7A 2ZOZA 1Z77A 2I10A 3Q0WA 2XDNA 3LOCA 3BJBA 2R7UA 3JSJA 3QQAA 1ORKA 2R7XA 4NN1A 4I76A 2B3WA 4OD5A 5FKNA 4GFLA 2FQ4A 3BQYA 2VKEA 3DCFA 2TCTA 2VKVA 3SWHA 3QPLA 4I6ZA 2HQ5A 3NI7A 2NX4A 3RH2A 2DG8A 3PASA 4ACIA 4MXMA 5IOZA 2ZCXA 2OPTA 2HXIA 2QOPA 4W97A 3IUVA 3AQSA 5D19A 2XRLA 2V57A 3IH2A 5IP6A 3BR3A 3KZ9A 4B1RA 1UI6A 2IU5A 3LWJA 4GCKA 3QBMA 3LSPA 3BT9A 5K58A 3HIMA 4AC0A 3Q0VA 1A6IA 3LJLA 3VTIA 4DW6A 5CW8A 2R7QA 3BHQA 2IEKA 4XK4A 3BR6A 3F0CA 5J3LA 3VVZA 2QTQA 5FKMA 5EFYA 3HE0A 1U9OA 3QPSA 3F1BA 3CCYA 4L62A 4W1UA 2G0EA 3VPRA 5CQGA 3VVYA 5FGLA 3KKCA 3NPIA 5EZHA 2REKA 2O7OA 2Y31A 2R7TA 2QKOA 5IPAA 3LSJA 3EUPA 3ZQIA 1JT6A 1UI5A 3CWRA 2WGBA 3VVXA 2UXUA 1RKWA 5GP9A 2R7VA 3B6CA 2GFNA 4ICHA 1RPWA 5EZGA 2HYTA 2R7OA 3KNWA 1U9NA 2G3BA 2FJ1A 3COLA 4UDSA 2DG7A 3ANGA 1T56A 5FKKA 3BTJA 3HTHA 3SDGA 4DVYP 1SGMA 3DEWA 3P9TA 2JJ7A 5FMPA 3NRGA 5F08A 2ZB9A 4JKZA 2D6YA 4V2FA 4B3AA 3ZQFA 2R7RA 3VOKA 2FBQA 3NNRA 4G12A 3G1MA 3BTCA 2OI8A 2GUHA 3ON4A 3VIBA 4PXIA 4AUXA 3B81A 3HTIA 2XGCA 4U9LA 5GPAA 3ANPA 3BR1A 2XGEA 5F27A 2IBDA 5HSZA 5J1UA 4KWAA 2FD5A 5D18A 3E7QA 3BTIA 2QIBA 1ZK8A 3C07A 5CXGA 4X1EA 2TRTA 3EGQA 5J1RA 2XPWA 2RASA 3WHCA 4M3DA 2X9DA 2ZY9A 5DAJA 5H9TA 4M3FA 2Y2ZA 3CRJA 3FIWA 4M3EA 2IAIA 2PFVA 3VW0A 4JYKA 3VW2A 3BR2A 3DU6A 2NP5A 4D5FA 3ZQHA 2JK3A 4AC6A 4YZEA 3TP0A 4M3BA 3FK7A 5F0FA 2XPUA 3MVPA 4ABZA 1VI0A 2G7GA 5HBUA 4GCTA 2VPRA 2NS7A 3ON2A 3ZQGA 2EH3A 5HAWA 2ZCNA 3G1OA 2ID6A 3G56A 3IH3A 3DU5A 2UXOA 3BRUA 4AF5A 3VW1A 4M3GA 2F07A 2RAEA 3BTLA 3HGYA 4MO7A 3FHNA 2B1EA 3G1LA 3BR5A 2UXIA 2X6OA 3NS4A 5D1RA 5IOYA 3S5RA 2GBYA 1QPIA 2YVXA 4WIBA 3GEUA 5F1JA 4GFKA 3VP5A 2QCOA 3O8HA 4JNNA 2XGDA 3BCGA 3RD3A 4U9NA 2UXPA 3KYLA 3NXCA 4D7MA 1QVUA 2WV1A 4D7NA 5F04A 3MNLA 3AQTA 2DTZA 1JTXA 4GCLA 4V2GA 3HTJA 2G7LA 4D5CA 4IRVA 4HKUA 4MK6A 3FK6A 5GPCA 4JL3A 5F0HA 3QKXA 2RHAA 3SFIA 2Q24A 3O8GA 5K7HA 2R7WA 2Y30A 3DPJA 2OERA 2YVHA 3Q3SA 2XB5A 2GENA 3HTAA 5C4YA 2HKUA 3FRQA 2ID3A 3B6AA 3CJDA 2ZCMA 3V78A 2PZ9A 3CDLA 3IH4A 3WHBA 1QVTA 3BR0A 1BJZA 1JTYA 3VOXA 1JUMA 2W53A 2G7SA 5FKLA 5CXIA 4CGRA 2UXHA 5FHPA 1T33A 2WUIA 3K8PC 4C2MA 1JT0A 3BQZA 1Z0XA 5F0CA 3PPBA 3O60A 5EYRA 2FX0A 2FJI1 2QWTA 5AQCA 3Q0UA 2O7TA 2HXOA 4NELA 3TP3A 3G7RA 2R7SA 3LHQA 2NS8A 3LSRA 5J1YA 1JUSA 2NP3A 3C2BA 2YVEA 3PM1A 5K7FA 2PBXA 3ZQLA 2ZOYA 3T6NA 3VUQA 5K7ZA 2A2FX 1JUPA 1ZKGA 3BNIA
chains in the Genus database with same CATH topology
2R7WA 4OD4A 3VTIA 2R7SA 4DVYP 2R7QA 3DU5A 2R7TA 3SWHA 3K8PC 4C2MA 4IRVA 4OD5A 2R7UA 2R7RA 3KYLA 2R7VA 2FJI1 3FHNA 2B1EA 2R7XA 2A2FX 2PFVA 3NS4A 3DU6A 2R7OA 2B3WA 5CQGA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2FJI 1;  3SWH A; 
#chains in the Genus database with same CATH topology
 3HGG A;  3KKD A;  3V6G A;  2HYJ A;  2XPV A;  4ME9 A;  4OD4 A;  5FKO A;  3GZI A;  1RKT A;  2OF7 A;  2ZOZ A;  1Z77 A;  2I10 A;  3Q0W A;  2XDN A;  3LOC A;  3BJB A;  2R7U A;  3JSJ A;  3QQA A;  1ORK A;  2R7X A;  4NN1 A;  4I76 A;  2B3W A;  4OD5 A;  5FKN A;  4GFL A;  2FQ4 A;  3BQY A;  2VKE A;  3DCF A;  2TCT A;  2VKV A;  3SWH A;  3QPL A;  4I6Z A;  2HQ5 A;  3NI7 A;  2NX4 A;  3RH2 A;  2DG8 A;  3PAS A;  4ACI A;  4MXM A;  5IOZ A;  2ZCX A;  2OPT A;  2HXI A;  2QOP A;  4W97 A;  3IUV A;  3AQS A;  5D19 A;  2XRL A;  2V57 A;  3IH2 A;  5IP6 A;  3BR3 A;  3KZ9 A;  4B1R A;  1UI6 A;  2IU5 A;  3LWJ A;  4GCK A;  3QBM A;  3LSP A;  3BT9 A;  5K58 A;  3HIM A;  4AC0 A;  3Q0V A;  1A6I A;  3LJL A;  3VTI A;  4DW6 A;  5CW8 A;  2R7Q A;  3BHQ A;  2IEK A;  4XK4 A;  3BR6 A;  3F0C A;  5J3L A;  3VVZ A;  2QTQ A;  5FKM A;  5EFY A;  3HE0 A;  1U9O A;  3QPS A;  3F1B A;  3CCY A;  4L62 A;  4W1U A;  2G0E A;  3VPR A;  5CQG A;  3VVY A;  5FGL A;  3KKC A;  3NPI A;  5EZH A;  2REK A;  2O7O A;  2Y31 A;  2R7T A;  2QKO A;  5IPA A;  3LSJ A;  3EUP A;  3ZQI A;  1JT6 A;  1UI5 A;  3CWR A;  2WGB A;  3VVX A;  2UXU A;  1RKW A;  5GP9 A;  2R7V A;  3B6C A;  2GFN A;  4ICH A;  1RPW A;  5EZG A;  2HYT A;  2R7O A;  3KNW A;  1U9N A;  2G3B A;  2FJ1 A;  3COL A;  4UDS A;  2DG7 A;  3ANG A;  1T56 A;  5FKK A;  3BTJ A;  3HTH A;  3SDG A;  4DVY P;  1SGM A;  3DEW A;  3P9T A;  2JJ7 A;  5FMP A;  3NRG A;  5F08 A;  2ZB9 A;  4JKZ A;  2D6Y A;  4V2F A;  4B3A A;  3ZQF A;  2R7R A;  3VOK A;  2FBQ A;  3NNR A;  4G12 A;  3G1M A;  3BTC A;  2OI8 A;  2GUH A;  3ON4 A;  3VIB A;  4PXI A;  4AUX A;  3B81 A;  3HTI A;  2XGC A;  4U9L A;  5GPA A;  3ANP A;  3BR1 A;  2XGE A;  5F27 A;  2IBD A;  5HSZ A;  5J1U A;  4KWA A;  2FD5 A;  5D18 A;  3E7Q A;  3BTI A;  2QIB A;  1ZK8 A;  3C07 A;  5CXG A;  4X1E A;  2TRT A;  3EGQ A;  5J1R A;  2XPW A;  2RAS A;  3WHC A;  4M3D A;  2X9D A;  2ZY9 A;  5DAJ A;  5H9T A;  4M3F A;  2Y2Z A;  3CRJ A;  3FIW A;  4M3E A;  2IAI A;  2PFV A;  3VW0 A;  4JYK A;  3VW2 A;  3BR2 A;  3DU6 A;  2NP5 A;  4D5F A;  3ZQH A;  2JK3 A;  4AC6 A;  4YZE A;  3TP0 A;  4M3B A;  3FK7 A;  5F0F A;  2XPU A;  3MVP A;  4ABZ A;  1VI0 A;  2G7G A;  5HBU A;  4GCT A;  2VPR A;  2NS7 A;  3ON2 A;  3ZQG A;  2EH3 A;  5HAW A;  2ZCN A;  3G1O A;  2ID6 A;  3G56 A;  3IH3 A;  3DU5 A;  2UXO A;  3BRU A;  4AF5 A;  3VW1 A;  4M3G A;  2F07 A;  2RAE A;  3BTL A;  3HGY A;  4MO7 A;  3FHN A;  2B1E A;  3G1L A;  3BR5 A;  2UXI A;  2X6O A;  3NS4 A;  5D1R A;  5IOY A;  3S5R A;  2GBY A;  1QPI A;  2YVX A;  4WIB A;  3GEU A;  5F1J A;  4GFK A;  3VP5 A;  2QCO A;  3O8H A;  4JNN A;  2XGD A;  3BCG A;  3RD3 A;  4U9N A;  2UXP A;  3KYL A;  3NXC A;  4D7M A;  1QVU A;  2WV1 A;  4D7N A;  5F04 A;  3MNL A;  3AQT A;  2DTZ A;  1JTX A;  4GCL A;  4V2G A;  3HTJ A;  2G7L A;  4D5C A;  4IRV A;  4HKU A;  4MK6 A;  3FK6 A;  5GPC A;  4JL3 A;  5F0H A;  3QKX A;  2RHA A;  3SFI A;  2Q24 A;  3O8G A;  5K7H A;  2R7W A;  2Y30 A;  3DPJ A;  2OER A;  2YVH A;  3Q3S A;  2XB5 A;  2GEN A;  3HTA A;  5C4Y A;  2HKU A;  3FRQ A;  2ID3 A;  3B6A A;  3CJD A;  2ZCM A;  3V78 A;  2PZ9 A;  3CDL A;  3IH4 A;  3WHB A;  1QVT A;  3BR0 A;  1BJZ A;  1JTY A;  3VOX A;  1JUM A;  2W53 A;  2G7S A;  5FKL A;  5CXI A;  4CGR A;  2UXH A;  5FHP A;  1T33 A;  2WUI A;  3K8P C;  4C2M A;  1JT0 A;  3BQZ A;  1Z0X A;  5F0C A;  3PPB A;  3O60 A;  5EYR A;  2FX0 A;  2FJI 1;  2QWT A;  5AQC A;  3Q0U A;  2O7T A;  2HXO A;  4NEL A;  3TP3 A;  3G7R A;  2R7S A;  3LHQ A;  2NS8 A;  3LSR A;  5J1Y A;  1JUS A;  2NP3 A;  3C2B A;  2YVE A;  3PM1 A;  5K7F A;  2PBX A;  3ZQL A;  2ZOY A;  3T6N A;  3VUQ A;  5K7Z A;  2A2F X;  1JUP A;  1ZKG A;  3BNI A; 
#chains in the Genus database with same CATH homology
 2R7W A;  4OD4 A;  3VTI A;  2R7S A;  4DVY P;  2R7Q A;  3DU5 A;  2R7T A;  3SWH A;  3K8P C;  4C2M A;  4IRV A;  4OD5 A;  2R7U A;  2R7R A;  3KYL A;  2R7V A;  2FJI 1;  3FHN A;  2B1E A;  2R7X A;  2A2F X;  2PFV A;  3NS4 A;  3DU6 A;  2R7O A;  2B3W A;  5CQG A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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