2FJI1

Crystal structure of the c-terminal domain of the exocyst subunit sec6p
Total Genus 167
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
167
sequence length
399
structure length
399
Chain Sequence
GSHMGDKEKETLFKDYLNLIVVKMTEWIGNLEKAEFDVFLERSTPPHSDSDGLLFLDGTKTCFQMFTQQVEVAAGTNQAKILVGVVERFSDLLTKRQKNWISKISEEIKKQINYNHKYDIDPESITPEDECPGGLVEYLIAVSNDQMKAADYAVAISSKYGKLVSKVYEKQITNHLEGTLDGFAEVAQCSSLGLITLMFDDLRKPYQEIFSKTWYMGSQAQQIADTLDEYLLDIKPQMNSVLFVNFIDNVIGETIIKFLTALSFEHSFKNKNNKFLEAMKRDFEIFYQLFVKVLDGNESKDTLITQNFTVMEFFMDLSCEPIDSILDIWQKYLEVYWDSRIDLLVGILKCRKDVSSSERKKIVQQATEMLHEYRRNMEANGVDREPTLMRRFVLEFEKQ
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Endocytosis/exocytosis
molecule keywords Exocyst complex component SEC6
publication title The structure of the exocyst subunit Sec6p defines a conserved architecture with diverse roles.
pubmed doi rcsb
source organism Saccharomyces cerevisiae
total genus 167
structure length 399
sequence length 399
chains with identical sequence 2
ec nomenclature
pdb deposition date 2006-01-02
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.357.50 Mainly Alpha Orthogonal Bundle Tetracycline Repressor; domain 2 Tetracycline Repressor; domain 2 2fji101
1.10.357.70 Mainly Alpha Orthogonal Bundle Tetracycline Repressor; domain 2 Tetracycline Repressor; domain 2 2fji102
2FJI1 3SWHA
chains in the Genus database with same CATH superfamily
1JT0A 4V2FA 2R7VA 1JTYA 3PM1A 3VW0A 2XRLA 2XB5A 3NPIA 3B81A 2YVEA 3Q0WA 2PFVA 3HE0A 3PPBA 5FKLA 3V78A 5D19A 2O7OA 3P9TA 3O60A 3HGYA 1Z77A 4GCTA 4B3AA 2G7LA 2UXPA 4XK4A 2NP3A 3BR2A 3ZQIA 4B1RA 2B3WA 3G1LA 5FKOA 1RKWA 2R7SA 2FD5A 5IP6A 3JSJA 2Q24A 5IOYA 3NS4A 3ZQHA 5D18A 3HTAA 2QKOA 4DW6A 5CW8A 3G1MA 3BR5A 4D7MA 3VUQA 3RD3A 4ICHA 5GPAA 3GEUA 5CQGA 2ZCMA 2XDNA 3T6NA 2FBQA 2IEKA 3SDGA 3IUVA 3LOCA 3O8GA 4W1UA 2R7QA 2F07A 4MK6A 3VPRA 1SGMA 3FRQA 5C4YA 3LHQA 1UI5A 3B6AA 4M3BA 3G1OA 2IBDA 5F04A 2B1EA 2ID6A 2GENA 2ZOZA 2JK3A 2G7SA 3BQZA 2G3BA 3CWRA 4YZEA 3LSPA 2RAEA 4ME9A 2R7OA 2NS7A 3BCGA 3CJDA 3VOKA 5FKNA 2HXOA 5FKKA 3C2BA 3BR3A 2R7WA 4DVYP 4HKUA 2Y2ZA 3NXCA 5K7HA 3BQYA 3DEWA 1RPWA 4WIBA 2IU5A 3KKCA 3Q0UA 4ACIA 4W97A 5HAWA 4OD5A 3BR0A 3G7RA 5AQCA 3QBMA 2DG7A 2EH3A 2HQ5A 2PZ9A 2IAIA 1VI0A 2XPVA 3LSRA 3FIWA 3BTCA 3LSJA 3MNLA 5EFYA 3RH2A 3EUPA 5J1RA 3C07A 3VIBA 3NRGA 4GFKA 3QKXA 3QPSA 5F0FA 3BTLA 5FMPA 2VPRA 3BRUA 3VVYA 2Y30A 5J1UA 1T56A 2WUIA 2XPWA 5GPCA 2QIBA 1ZK8A 3IH2A 3KKDA 3VW1A 4KWAA 2FQ4A 2I10A 2GUHA 3CCYA 1QVUA 2NP5A 2JJ7A 2QCOA 5K7FA 4M3DA 2R7UA 3ANGA 3G56A 5J1YA 2UXIA 3CRJA 1ORKA 1A6IA 2UXHA 1JTXA 4NELA 2OI8A 3Q3SA 2YVHA 3PASA 3DU5A 4JKZA 5H9TA 4GCLA 2DG8A 4M3GA 2V57A 2Y31A 2VKVA 3QPLA 5GP9A 3VTIA 4I6ZA 2HXIA 4OD4A 3SFIA 3BTJA 5F0HA 5FGLA 3KNWA 3B6CA 4D7NA 4IRVA 5F0CA 1JUMA 3AQSA 1QVTA 3TP3A 2XGDA 3DU6A 2GFNA 2W53A 5D1RA 2R7TA 3F0CA 3LJLA 2HYJA 5EZHA 1U9OA 2ID3A 5J3LA 3Q0VA 3HGGA 3BR6A 2REKA 3EGQA 4V2GA 1JUSA 2XPUA 5EZGA 3KZ9A 3VW2A 3VVXA 2WV1A 2OF7A 2ZB9A 1QPIA 4JL3A 3DPJA 3SWHA 4MO7A 3HIMA 2O7TA 3WHBA 2PBXA 1JT6A 2TCTA 3HTHA 3FK7A 3KYLA 2R7XA 2G0EA 5F27A 1ZKGA 2X6OA 3VP5A 3VOXA 4D5CA 4PXIA 4JNNA 2GBYA 2RASA 1Z0XA 3FK6A 2A2FX 4GCKA 3DCFA 3O8HA 3BNIA 3BTIA 3HTJA 2DTZA 3BHQA 3QQAA 4X1EA 5FHPA 2QOPA 3ON4A 2NX4A 2FJ1A 3FHNA 1JUPA 4AUXA 3NNRA 3TP0A 1UI6A 3LWJA 2XGEA 1T33A 4ABZA 4U9NA 4L62A 3K8PC 4AC0A 3BT9A 2ZOYA 2X9DA 4CGRA 3S5RA 4AF5A 3ZQGA 3IH4A 2OPTA 2WGBA 4M3FA 2G7GA 5HBUA 3WHCA 2ZY9A 3V6GA 5EYRA 3ZQFA 4AC6A 2RHAA 1BJZA 5K58A 2FX0A 2YVXA 4U9LA 4G12A 2UXUA 4JYKA 1U9NA 2TRTA 4M3EA 4D5FA 3BJBA 5F1JA 2QTQA 3ANPA 5DAJA 3HTIA 2QWTA 2D6YA 1RKTA 3GZIA 2VKEA 3AQTA 3ON2A 4I76A 3F1BA 3ZQLA 3VVZA 5F08A 3BR1A 2HKUA 5HSZA 2NS8A 5CXGA 3NI7A 3COLA 2UXOA 3CDLA 3MVPA 4GFLA 5K7ZA 4MXMA 5IPAA 2FJI1 2R7RA 3E7QA 5FKMA 5CXIA 2XGCA 4UDSA 4NN1A 2ZCXA 2ZCNA 5IOZA 2OERA 4C2MA 2HYTA 3IH3A
chains in the Genus database with same CATH topology
4OD5A 3KYLA 2R7VA 4IRVA 2R7XA 2B1EA 3VTIA 2R7UA 2B3WA 5CQGA 2R7SA 2R7WA 3DU6A 3FHNA 2FJI1 2R7RA 2PFVA 2R7TA 3SWHA 4DVYP 3NS4A 4OD4A 2A2FX 3DU5A 3K8PC 2R7OA 2R7QA 4C2MA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2FJI 1;  3SWH A; 
#chains in the Genus database with same CATH topology
 1JT0 A;  4V2F A;  2R7V A;  1JTY A;  3PM1 A;  3VW0 A;  2XRL A;  2XB5 A;  3NPI A;  3B81 A;  2YVE A;  3Q0W A;  2PFV A;  3HE0 A;  3PPB A;  5FKL A;  3V78 A;  5D19 A;  2O7O A;  3P9T A;  3O60 A;  3HGY A;  1Z77 A;  4GCT A;  4B3A A;  2G7L A;  2UXP A;  4XK4 A;  2NP3 A;  3BR2 A;  3ZQI A;  4B1R A;  2B3W A;  3G1L A;  5FKO A;  1RKW A;  2R7S A;  2FD5 A;  5IP6 A;  3JSJ A;  2Q24 A;  5IOY A;  3NS4 A;  3ZQH A;  5D18 A;  3HTA A;  2QKO A;  4DW6 A;  5CW8 A;  3G1M A;  3BR5 A;  4D7M A;  3VUQ A;  3RD3 A;  4ICH A;  5GPA A;  3GEU A;  5CQG A;  2ZCM A;  2XDN A;  3T6N A;  2FBQ A;  2IEK A;  3SDG A;  3IUV A;  3LOC A;  3O8G A;  4W1U A;  2R7Q A;  2F07 A;  4MK6 A;  3VPR A;  1SGM A;  3FRQ A;  5C4Y A;  3LHQ A;  1UI5 A;  3B6A A;  4M3B A;  3G1O A;  2IBD A;  5F04 A;  2B1E A;  2ID6 A;  2GEN A;  2ZOZ A;  2JK3 A;  2G7S A;  3BQZ A;  2G3B A;  3CWR A;  4YZE A;  3LSP A;  2RAE A;  4ME9 A;  2R7O A;  2NS7 A;  3BCG A;  3CJD A;  3VOK A;  5FKN A;  2HXO A;  5FKK A;  3C2B A;  3BR3 A;  2R7W A;  4DVY P;  4HKU A;  2Y2Z A;  3NXC A;  5K7H A;  3BQY A;  3DEW A;  1RPW A;  4WIB A;  2IU5 A;  3KKC A;  3Q0U A;  4ACI A;  4W97 A;  5HAW A;  4OD5 A;  3BR0 A;  3G7R A;  5AQC A;  3QBM A;  2DG7 A;  2EH3 A;  2HQ5 A;  2PZ9 A;  2IAI A;  1VI0 A;  2XPV A;  3LSR A;  3FIW A;  3BTC A;  3LSJ A;  3MNL A;  5EFY A;  3RH2 A;  3EUP A;  5J1R A;  3C07 A;  3VIB A;  3NRG A;  4GFK A;  3QKX A;  3QPS A;  5F0F A;  3BTL A;  5FMP A;  2VPR A;  3BRU A;  3VVY A;  2Y30 A;  5J1U A;  1T56 A;  2WUI A;  2XPW A;  5GPC A;  2QIB A;  1ZK8 A;  3IH2 A;  3KKD A;  3VW1 A;  4KWA A;  2FQ4 A;  2I10 A;  2GUH A;  3CCY A;  1QVU A;  2NP5 A;  2JJ7 A;  2QCO A;  5K7F A;  4M3D A;  2R7U A;  3ANG A;  3G56 A;  5J1Y A;  2UXI A;  3CRJ A;  1ORK A;  1A6I A;  2UXH A;  1JTX A;  4NEL A;  2OI8 A;  3Q3S A;  2YVH A;  3PAS A;  3DU5 A;  4JKZ A;  5H9T A;  4GCL A;  2DG8 A;  4M3G A;  2V57 A;  2Y31 A;  2VKV A;  3QPL A;  5GP9 A;  3VTI A;  4I6Z A;  2HXI A;  4OD4 A;  3SFI A;  3BTJ A;  5F0H A;  5FGL A;  3KNW A;  3B6C A;  4D7N A;  4IRV A;  5F0C A;  1JUM A;  3AQS A;  1QVT A;  3TP3 A;  2XGD A;  3DU6 A;  2GFN A;  2W53 A;  5D1R A;  2R7T A;  3F0C A;  3LJL A;  2HYJ A;  5EZH A;  1U9O A;  2ID3 A;  5J3L A;  3Q0V A;  3HGG A;  3BR6 A;  2REK A;  3EGQ A;  4V2G A;  1JUS A;  2XPU A;  5EZG A;  3KZ9 A;  3VW2 A;  3VVX A;  2WV1 A;  2OF7 A;  2ZB9 A;  1QPI A;  4JL3 A;  3DPJ A;  3SWH A;  4MO7 A;  3HIM A;  2O7T A;  3WHB A;  2PBX A;  1JT6 A;  2TCT A;  3HTH A;  3FK7 A;  3KYL A;  2R7X A;  2G0E A;  5F27 A;  1ZKG A;  2X6O A;  3VP5 A;  3VOX A;  4D5C A;  4PXI A;  4JNN A;  2GBY A;  2RAS A;  1Z0X A;  3FK6 A;  2A2F X;  4GCK A;  3DCF A;  3O8H A;  3BNI A;  3BTI A;  3HTJ A;  2DTZ A;  3BHQ A;  3QQA A;  4X1E A;  5FHP A;  2QOP A;  3ON4 A;  2NX4 A;  2FJ1 A;  3FHN A;  1JUP A;  4AUX A;  3NNR A;  3TP0 A;  1UI6 A;  3LWJ A;  2XGE A;  1T33 A;  4ABZ A;  4U9N A;  4L62 A;  3K8P C;  4AC0 A;  3BT9 A;  2ZOY A;  2X9D A;  4CGR A;  3S5R A;  4AF5 A;  3ZQG A;  3IH4 A;  2OPT A;  2WGB A;  4M3F A;  2G7G A;  5HBU A;  3WHC A;  2ZY9 A;  3V6G A;  5EYR A;  3ZQF A;  4AC6 A;  2RHA A;  1BJZ A;  5K58 A;  2FX0 A;  2YVX A;  4U9L A;  4G12 A;  2UXU A;  4JYK A;  1U9N A;  2TRT A;  4M3E A;  4D5F A;  3BJB A;  5F1J A;  2QTQ A;  3ANP A;  5DAJ A;  3HTI A;  2QWT A;  2D6Y A;  1RKT A;  3GZI A;  2VKE A;  3AQT A;  3ON2 A;  4I76 A;  3F1B A;  3ZQL A;  3VVZ A;  5F08 A;  3BR1 A;  2HKU A;  5HSZ A;  2NS8 A;  5CXG A;  3NI7 A;  3COL A;  2UXO A;  3CDL A;  3MVP A;  4GFL A;  5K7Z A;  4MXM A;  5IPA A;  2FJI 1;  2R7R A;  3E7Q A;  5FKM A;  5CXI A;  2XGC A;  4UDS A;  4NN1 A;  2ZCX A;  2ZCN A;  5IOZ A;  2OER A;  4C2M A;  2HYT A;  3IH3 A; 
#chains in the Genus database with same CATH homology
 4OD5 A;  3KYL A;  2R7V A;  4IRV A;  2R7X A;  2B1E A;  3VTI A;  2R7U A;  2B3W A;  5CQG A;  2R7S A;  2R7W A;  3DU6 A;  3FHN A;  2FJI 1;  2R7R A;  2PFV A;  2R7T A;  3SWH A;  4DVY P;  3NS4 A;  4OD4 A;  2A2F X;  3DU5 A;  3K8P C;  2R7O A;  2R7Q A;  4C2M A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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