3NS4 | Genus

Total Genus 69

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	69
sequence length	216
structure length	205
Chain Sequence	FILSQFNRDVYKWNFLDKVIDIMTTNFVSNTIRLLQPVPPFSLAGSKRKFETRTVVNIGEQLLLDLELLKEIFHTLPESVSNDSDLRENTSYKRVKRHADNNIDQLLKFIKLLMAPLDSADDYYETYSKLTNNNPDSAVWSFVLALKGIPWDLALWKKMWSAYNLETNRDLFIFKWDKVLLGQFENNLARMQDPNWSKFVRQDLK

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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reading 205 atoms

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205 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

molecule tags	Protein binding
source organism	Saccharomyces cerevisiae
publication title	Structure of a C-terminal fragment of its Vps53 subunit suggests similarity of Golgi-associated retrograde protein (GARP) complex to a family of tethering complexes. pubmed doi rcsb
molecule keywords	Vacuolar protein sorting-associated protein 53
total genus	69
structure length	205
sequence length	216
ec nomenclature
pdb deposition date	2010-07-01

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF16854	VPS53_C	Vacuolar protein sorting-associated protein 53 C-terminus

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.10.357.110	Mainly Alpha	Orthogonal Bundle	Tetracycline Repressor; domain 2	Tetracycline Repressor; domain 2	3ns4A00

3NS4A
chains in the Genus database with same CATH superfamily

2I10A 3FK7A 3BNIA 3KZ9A 4D5CA 1A6IA 3B6AA 2XRLA 1T33A 3CCYA 3NI7A 2O7TA 4NELA 3IH4A 3G7RA 2DG8A 3BTCA 3EUPA 2IEKA 2UXIA 3BR6A 5FKOA 5EZHA 2FX0A 3KKDA 2XB5A 2XPWA 5GPAA 2R7SA 5J3LA 1QVUA 4ME9A 2QWTA 4XK4A 2HYTA 5FMPA 1UI6A 3VP5A 3P9TA 3KKCA 3QPLA 2NX4A 4M3FA 2HXOA 3RD3A 4AUXA 5GP9A 3ON2A 5IPAA 5FGLA 2YVHA 3BR2A 2R7RA 4JKZA 5F27A 2Q24A 3ZQFA 4B3AA 1VI0A 1JUMA 3ON4A 2OF7A 3G1OA 2IU5A 2ZB9A 3VOKA 3NRGA 5IOYA 5FKMA 1ORKA 3WHCA 5EZGA 3HE0A 4U9NA 4V2GA 4UDSA 3VW0A 4U9LA 1JTYA 5CQGA 1RKWA 2ZCMA 2G3BA 4MXMA 2XPVA 2ZCXA 5IOZA 1JT0A 3HTHA 5J1UA 2ID3A 3VUQA 2VPRA 4M3GA 5D19A 2UXHA 3VVXA 2O7OA 3O8HA 3PASA 5F1JA 3PM1A 1SGMA 3VOXA 2UXUA 2NP3A 1JT6A 3MNLA 2REKA 1Z0XA 3LOCA 3BHQA 3LSPA 2HXIA 3QBMA 2R7QA 2F07A 5C4YA 2NP5A 5FHPA 3IH3A 2UXOA 3DCFA 5EFYA 3BT9A 5F0FA 2D6YA 3HTAA 2G7LA 3V78A 2XGDA 3DU5A 4M3DA 3S5RA 3ANPA 2V57A 3GEUA 2G7SA 3O60A 3FRQA 3FIWA 2PBXA 5HBUA 3B81A 2WV1A 3TP0A 1U9NA 4PXIA 3BQYA 2XPUA 5F04A 2ZCNA 4M3BA 2WGBA 2IAIA 3HTJA 2FQ4A 4M3EA 3VW1A 1UI5A 3EGQA 4G12A 4WIBA 5J1YA 1T56A 3BCGA 3HIMA 4X1EA 3E7QA 3NS4A 3LHQA 4ICHA 2ZOYA 3VTIA 2JJ7A 2XGCA 3BRUA 4AF5A 2RHAA 2B3WA 3VIBA 3VW2A 3COLA 3DEWA 2OI8A 2PFVA 4JYKA 4W97A 2JK3A 3BR3A 2YVEA 2XGEA 3G1LA 5FKKA 4DW6A 5GPCA 5H9TA 5K7ZA 5CW8A 2FD5A 3HTIA 3BTIA 1ZKGA 3VVZA 5CXGA 2QOPA 2RAEA 3QQAA 1RPWA 3KYLA 2VKEA 3AQSA 4I6ZA 5HAWA 3O8GA 2GUHA 2FJI1 4DVYP 3LSJA 4GCKA 3G1MA 5EYRA 4D7MA 2G0EA 3QPSA 4GFLA 2R7WA 3VPRA 3Q3SA 4C2MA 3CRJA 4V2FA 5AQCA 3ANGA 3LWJA 4W1UA 3PPBA 3RH2A 1QPIA 3V6GA 3ZQLA 3LJLA 5F08A 4NN1A 2EH3A 2FBQA 4B1RA 1JTXA 5F0HA 2R7TA 3CDLA 3BTJA 3QKXA 2NS8A 2HQ5A 1ZK8A 3NXCA 3FHNA 1RKTA 5D1RA 3BTLA 2XDNA 3F0CA 1Z77A 3TP3A 2YVXA 2QCOA 3BR1A 3CWRA 2PZ9A 2ID6A 2B1EA 5K7HA 4JL3A 3ZQGA 4CGRA 3F1BA 2Y2ZA 2GENA 4D5FA 2X6OA 3BR5A 1JUSA 2ZOZA 3WHBA 3G56A 2GBYA 4D7NA 4ABZA 5IP6A 3DPJA 2FJ1A 1BJZA 4OD4A 3KNWA 4MK6A 5CXIA 3JSJA 3BQZA 4YZEA 3IUVA 2QKOA 5D18A 3MVPA 3SWHA 4AC0A 5K7FA 3SFIA 3C2BA 3DU6A 2RASA 5FKNA 2IBDA 4GCLA 3NPIA 3T6NA 2R7UA 5F0CA 3B6CA 1JUPA 4AC6A 2R7VA 5FKLA 3VVYA 3BR0A 4KWAA 4OD5A 2TRTA 2DG7A 3Q0VA 4MO7A 5K58A 3AQTA 2A2FX 2TCTA 2WUIA 3FK6A 4JNNA 2Y30A 3BJBA 3SDGA 4HKUA 2G7GA 2X9DA 4I76A 4L62A 2VKVA 3C07A 2HKUA 2QIBA 3ZQIA 3Q0WA 2UXPA 1U9OA 5J1RA 1QVTA 2OERA 2ZY9A 4GFKA 3ZQHA 5HSZA 2W53A 3K8PC 2GFNA 3GZIA 2HYJA 3NNRA 2NS7A 2Y31A 3Q0UA 3LSRA 3HGGA 3CJDA 3IH2A 4GCTA 2OPTA 2R7OA 2R7XA 4IRVA 2QTQA 5DAJA 3HGYA 2DTZA 4ACIA
chains in the Genus database with same CATH topology

3FHNA 2PFVA 3DU6A 3DU5A 3NS4A 2R7UA 2R7SA 5CQGA 3K8PC 2FJI1 2R7RA 4OD4A 2A2FX 3VTIA 4DVYP 2B1EA 2B3WA 2R7VA 2R7QA 2R7OA 2R7XA 4IRVA 2R7WA 2R7TA 3KYLA 4C2MA 3SWHA 4OD5A
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 3NS4 A; 
#chains in the Genus database with same CATH topology
 2I10 A;  3FK7 A;  3BNI A;  3KZ9 A;  4D5C A;  1A6I A;  3B6A A;  2XRL A;  1T33 A;  3CCY A;  3NI7 A;  2O7T A;  4NEL A;  3IH4 A;  3G7R A;  2DG8 A;  3BTC A;  3EUP A;  2IEK A;  2UXI A;  3BR6 A;  5FKO A;  5EZH A;  2FX0 A;  3KKD A;  2XB5 A;  2XPW A;  5GPA A;  2R7S A;  5J3L A;  1QVU A;  4ME9 A;  2QWT A;  4XK4 A;  2HYT A;  5FMP A;  1UI6 A;  3VP5 A;  3P9T A;  3KKC A;  3QPL A;  2NX4 A;  4M3F A;  2HXO A;  3RD3 A;  4AUX A;  5GP9 A;  3ON2 A;  5IPA A;  5FGL A;  2YVH A;  3BR2 A;  2R7R A;  4JKZ A;  5F27 A;  2Q24 A;  3ZQF A;  4B3A A;  1VI0 A;  1JUM A;  3ON4 A;  2OF7 A;  3G1O A;  2IU5 A;  2ZB9 A;  3VOK A;  3NRG A;  5IOY A;  5FKM A;  1ORK A;  3WHC A;  5EZG A;  3HE0 A;  4U9N A;  4V2G A;  4UDS A;  3VW0 A;  4U9L A;  1JTY A;  5CQG A;  1RKW A;  2ZCM A;  2G3B A;  4MXM A;  2XPV A;  2ZCX A;  5IOZ A;  1JT0 A;  3HTH A;  5J1U A;  2ID3 A;  3VUQ A;  2VPR A;  4M3G A;  5D19 A;  2UXH A;  3VVX A;  2O7O A;  3O8H A;  3PAS A;  5F1J A;  3PM1 A;  1SGM A;  3VOX A;  2UXU A;  2NP3 A;  1JT6 A;  3MNL A;  2REK A;  1Z0X A;  3LOC A;  3BHQ A;  3LSP A;  2HXI A;  3QBM A;  2R7Q A;  2F07 A;  5C4Y A;  2NP5 A;  5FHP A;  3IH3 A;  2UXO A;  3DCF A;  5EFY A;  3BT9 A;  5F0F A;  2D6Y A;  3HTA A;  2G7L A;  3V78 A;  2XGD A;  3DU5 A;  4M3D A;  3S5R A;  3ANP A;  2V57 A;  3GEU A;  2G7S A;  3O60 A;  3FRQ A;  3FIW A;  2PBX A;  5HBU A;  3B81 A;  2WV1 A;  3TP0 A;  1U9N A;  4PXI A;  3BQY A;  2XPU A;  5F04 A;  2ZCN A;  4M3B A;  2WGB A;  2IAI A;  3HTJ A;  2FQ4 A;  4M3E A;  3VW1 A;  1UI5 A;  3EGQ A;  4G12 A;  4WIB A;  5J1Y A;  1T56 A;  3BCG A;  3HIM A;  4X1E A;  3E7Q A;  3NS4 A;  3LHQ A;  4ICH A;  2ZOY A;  3VTI A;  2JJ7 A;  2XGC A;  3BRU A;  4AF5 A;  2RHA A;  2B3W A;  3VIB A;  3VW2 A;  3COL A;  3DEW A;  2OI8 A;  2PFV A;  4JYK A;  4W97 A;  2JK3 A;  3BR3 A;  2YVE A;  2XGE A;  3G1L A;  5FKK A;  4DW6 A;  5GPC A;  5H9T A;  5K7Z A;  5CW8 A;  2FD5 A;  3HTI A;  3BTI A;  1ZKG A;  3VVZ A;  5CXG A;  2QOP A;  2RAE A;  3QQA A;  1RPW A;  3KYL A;  2VKE A;  3AQS A;  4I6Z A;  5HAW A;  3O8G A;  2GUH A;  2FJI 1;  4DVY P;  3LSJ A;  4GCK A;  3G1M A;  5EYR A;  4D7M A;  2G0E A;  3QPS A;  4GFL A;  2R7W A;  3VPR A;  3Q3S A;  4C2M A;  3CRJ A;  4V2F A;  5AQC A;  3ANG A;  3LWJ A;  4W1U A;  3PPB A;  3RH2 A;  1QPI A;  3V6G A;  3ZQL A;  3LJL A;  5F08 A;  4NN1 A;  2EH3 A;  2FBQ A;  4B1R A;  1JTX A;  5F0H A;  2R7T A;  3CDL A;  3BTJ A;  3QKX A;  2NS8 A;  2HQ5 A;  1ZK8 A;  3NXC A;  3FHN A;  1RKT A;  5D1R A;  3BTL A;  2XDN A;  3F0C A;  1Z77 A;  3TP3 A;  2YVX A;  2QCO A;  3BR1 A;  3CWR A;  2PZ9 A;  2ID6 A;  2B1E A;  5K7H A;  4JL3 A;  3ZQG A;  4CGR A;  3F1B A;  2Y2Z A;  2GEN A;  4D5F A;  2X6O A;  3BR5 A;  1JUS A;  2ZOZ A;  3WHB A;  3G56 A;  2GBY A;  4D7N A;  4ABZ A;  5IP6 A;  3DPJ A;  2FJ1 A;  1BJZ A;  4OD4 A;  3KNW A;  4MK6 A;  5CXI A;  3JSJ A;  3BQZ A;  4YZE A;  3IUV A;  2QKO A;  5D18 A;  3MVP A;  3SWH A;  4AC0 A;  5K7F A;  3SFI A;  3C2B A;  3DU6 A;  2RAS A;  5FKN A;  2IBD A;  4GCL A;  3NPI A;  3T6N A;  2R7U A;  5F0C A;  3B6C A;  1JUP A;  4AC6 A;  2R7V A;  5FKL A;  3VVY A;  3BR0 A;  4KWA A;  4OD5 A;  2TRT A;  2DG7 A;  3Q0V A;  4MO7 A;  5K58 A;  3AQT A;  2A2F X;  2TCT A;  2WUI A;  3FK6 A;  4JNN A;  2Y30 A;  3BJB A;  3SDG A;  4HKU A;  2G7G A;  2X9D A;  4I76 A;  4L62 A;  2VKV A;  3C07 A;  2HKU A;  2QIB A;  3ZQI A;  3Q0W A;  2UXP A;  1U9O A;  5J1R A;  1QVT A;  2OER A;  2ZY9 A;  4GFK A;  3ZQH A;  5HSZ A;  2W53 A;  3K8P C;  2GFN A;  3GZI A;  2HYJ A;  3NNR A;  2NS7 A;  2Y31 A;  3Q0U A;  3LSR A;  3HGG A;  3CJD A;  3IH2 A;  4GCT A;  2OPT A;  2R7O A;  2R7X A;  4IRV A;  2QTQ A;  5DAJ A;  3HGY A;  2DTZ A;  4ACI A; 
#chains in the Genus database with same CATH homology
 3FHN A;  2PFV A;  3DU6 A;  3DU5 A;  3NS4 A;  2R7U A;  2R7S A;  5CQG A;  3K8P C;  2FJI 1;  2R7R A;  4OD4 A;  2A2F X;  3VTI A;  4DVY P;  2B1E A;  2B3W A;  2R7V A;  2R7Q A;  2R7O A;  2R7X A;  4IRV A;  2R7W A;  2R7T A;  3KYL A;  4C2M A;  3SWH A;  4OD5 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3NS4A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

pfam database annotations