The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
8
|
sequence length |
54
|
structure length |
54
|
Chain Sequence |
MKKYTCTVCAYIYNPEDGDPDNGVNPGTDFKDIPDDWVCPLCGVGKDQFEEVEE
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Rubredoxin from Clostridium pasteurianum. Structures of G10A, G43A and G10VG43A mutant proteins. Mutation of conserved glycine 10 to valine causes the 9-10 peptide link to invert.
pubmed doi rcsb |
| molecule tags |
Electron transport
|
| source organism |
Clostridium pasteurianum
|
| molecule keywords |
PROTEIN (RUBREDOXIN)
|
| total genus |
8
|
| structure length |
54
|
| sequence length |
54
|
| ec nomenclature | |
| pdb deposition date | 1998-11-26 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF00301 | Rubredoxin | Rubredoxin |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | Single Sheet | Rubrerythrin, domain 2 | Rubrerythrin, domain 2 |
#chains in the Genus database with same CATH superfamily 1R0I A; 2GMG A; 1S2Z A; 1RDG A; 3KYY A; 2DSX A; 1YUX A; 1SMU A; 1LKO A; 3SS2 A; 2MS3 A; 3KYV A; 4K9F A; 2QL0 A; 1YK5 A; 1E8J A; 1R0J A; 1BQ8 A; 1YUZ A; 3KYX A; 1LKM A; 3MPS A; 1QCV A; 1JYB A; 1VCX A; 2PYA A; 1RWD A; 1FHH A; 1DX8 A; 4AR4 A; 1ZRP A; 5AI3 A; 6RXN A; 2KKD A; 2KN9 A; 1BQ9 A; 1BE7 A; 3QVD A; 8RXN A; 2M4Y A; 1RB9 A; 1H7V A; 1YK4 A; 3KYU A; 1B13 A; 1B2O A; 4AR5 A; 1T9O A; 2HR5 A; 7RXN A; 1R0F A; 1T9P A; 1SMW A; 2K2D A; 2RDV A; 1FHM A; 1DVB A; 1SMM A; 1BRF A; 1IRO A; 4POG A; 4AR3 A; 1IU6 A; 4YWL A; 1T9Q A; 3PWF A; 1R0G A; 1C09 A; 3RYG A; 4POF A; 3KYW A; 1YV1 A; 3A44 A; 1LKP A; 1RYT A; 1R0H A; 1CAA A; 4AR6 A; 4YWM A; 2LCQ A; 1B71 A; 4ME3 A; 2V3B B; 2VL6 A; 2PVE A; 1LTL A; 1QYB A; 1NNQ A; 1CAD A; 1S24 A; 1IU5 A; 1B2J A; 4RXN A; 5IY0 A; 3RZT A; 4TPU A; 3PZA A; 3RZ6 A; 5RXN A; 5AI2 A; 1RDV A; 2PVX A; 1IRN A; 1BFY A; 1S30 A; #chains in the Genus database with same CATH topology 4C3H L; 3S16 L; 3VPB E; 3PKJ A; 2H12 A; 2AQC A; 2R92 L; 2E2H L; 3P8B A; 3S1M L; 2Z3Q B; 3GTK L; 3CQZ L; 4XXB B; 3KYV A; 3HKZ P; 4K9F A; 4G6B A; 2B5I D; 1VZI A; 1TWG L; 1YUZ A; 3S2D L; 5GAD c; 2WB1 P; 1Y1W L; 3GTM L; 5EIN C; 2PYA A; 3K35 A; 3GTL L; 2RFK B; 4JAE A; 3GTP L; 3WWL A; 1BQ9 A; 5K2M E; 3QVD A; 4AHW A; 4E6Y A; 2B63 L; 2C6A A; 1PZX A; 1PFV A; 3PO2 L; 1RB9 A; 5FJ8 L; 1YK4 A; 2WAQ P; 3S1R L; 3KYU A; 1TWC L; 3I4N L; 1NXE A; 3HOW L; 1I3Q L; 4A3B L; 3S2H L; 5JVH 1; 5MF6 A; 4POG A; 1IU6 A; 4Y52 L; 1R0G A; 4X6A L; 4XGH A; 5MGN A; 5M3F L; 2C6B A; 4POF A; 3WWN B; 3HOU L; 2EY4 E; 1Z92 B; 4YWM A; 3J7Y 1; 3S1Q L; 2PSM C; 2XJP A; 5M3M L; 4AI1 A; 3LNL A; 4A3L L; 2VL6 A; 2JA8 L; 5IP9 L; 3IU3 I; 4A3G L; 1VZG A; 1F4L A; 2VUM L; 1WJV A; 4TPU A; 5JVG 1; 1BFY A; 1S30 A; 3LWV B; 4C2M 1; 1RDG A; 4JAG A; 4A3K L; 2NVY L; 5H1S c; 3GTG L; 3LWO B; 4AHZ A; 1PFW A; 4A3D L; 2QL0 A; 2APO B; 5C4X L; 1E8J A; 5IYC L; 2JI2 A; 3H97 A; 5M5W L; 3K7A L; 1LKM A; 3MPS A; 1PFU A; 4A93 L; 1QCV A; 4ZN3 B; 5AN9 H; 3ZG6 A; 5GAH c; 2YU9 L; 1FHH A; 2M6O A; 6RXN A; 2A68 D; 4AI0 A; 3GTO L; 4TVM A; 2JI3 A; 3H9B A; 1H7V A; 3S1N L; 3LWQ B; 1QQT A; 3JR7 A; 4Y7N L; 1B2O A; 1ODH A; 4AR5 A; 1T9O A; 5C4J L; 2XJR A; 3P2A A; 3B08 B; 3FDJ A; 1IRO A; 4YWL A; 1T9Q A; 3PWF A; 4A3F L; 3GTJ L; 2HVY C; 3M3Y L; 2CR8 A; 1TWA L; 3A44 A; 1LKP A; 2AUS B; 1RYT A; 2A69 D; 2R7Z L; 2LCQ A; 2R93 L; 3LPE B; 4BY1 L; 2XJV A; 5FLM L; 5IP7 L; 4BY7 L; 3HAX C; 1OWB A; 3GTQ L; 5IYB L; 3H9C A; 5IY0 A; 1SFO L; 3LWP B; 3PIO 1; 2XJS A; 1IRN A; 2Z3R B; 1R0I A; 3PKI A; 2DSX A; 4A3E L; 5MFP A; 2MS3 A; 3J7Z 1; 4GS7 D; 3H3V M; 2ZIX A; 4JAF A; 4AHX A; 2JI1 A; 1R0J A; 5MLC 3; 4AI3 A; 2M6P A; 3KYX A; 5C44 L; 3PO3 L; 2XJT A; 4AR4 A; 3HJY B; 1ZRP A; 5AI3 A; 2KKD A; 4A3I L; 3NFP I; 8RXN A; 2A6H D; 2ERJ A; 1VZH A; 2M4V A; 3QQC E; 2BE5 D; 5MFZ A; 1Y1V L; 4LHL A; 4B8C D; 1B13 A; 1R9T L; 2PMZ P; 5IYD L; 7RXN A; 5M5Y L; 1R0F A; 2Y0S P; 5M5X L; 1RYQ A; 2K2D A; 2RDV A; 2JA5 L; 1SMM A; 3RZD L; 4A3M L; 4LHN A; 1P7P A; 3RYG A; 2O5J D; 3HOZ L; 3KYW A; 4AR6 A; 3H0G L; 4ME3 A; 4C3J L; 1NXG A; 2CKA A; 5DM7 1; 2V3B B; 4A3C L; 1TWH L; 2NYD A; 1CAD A; 1S24 A; 1IU5 A; 1B2J A; 5EIO C; 3RZ6 A; 2ERS A; 5AI2 A; 2AYJ A; 2PVX A; 2XJU A; 2L0Z A; 2GMG A; 1S2Z A; 3KYY A; 1YUX A; 1SMU A; 1LKO A; 3SS2 A; 1IW7 D; 1K83 L; 1TWF L; 4BBR L; 3MSU A; 1I50 L; 1YK5 A; 1BQ8 A; 5C3E L; 4AYB P; 2J9U B; 3I4M L; 1JYB A; 3PL5 A; 1VCX A; 2CKC A; 1RWD A; 1DX8 A; 2E2J L; 3S15 L; 3MQK B; 2KN9 A; 3M4O L; 1BE7 A; 2A6E D; 2M4Y A; 4QIW P; 2JA7 L; 4BBS L; 5DM6 1; 3S17 L; 2NVT L; 5GAG c; 1OWC A; 3B0A B; 4UY8 1; 3H99 A; 2HR5 A; 3RZO L; 1T9P A; 1SMW A; 4U67 1; 1FHM A; 1DVB A; 1BRF A; 4AR3 A; 4JAD A; 3HOX L; 4AHY A; 2E2I L; 3HJW B; 1C09 A; 2PPT A; 3FKI L; 4C3I L; 1YV1 A; 3S14 L; 4AI2 A; 4BXX L; 1I6H L; 3LWR B; 1R0H A; 1PFY A; 1CAA A; 2XJQ A; 4V19 6; 1B71 A; 5GAE c; 3HOV L; 2PVE A; 1LTL A; 2V0F A; 2JA6 L; 3HOY L; 1QYB A; 1WCM L; 1NNQ A; 4WFN 1; 2NVQ L; 2V0E A; 4RXN A; 3PIP 1; 3RZT A; 4A3J L; 3PZA A; 5RXN A; 1RDV A; 4ZN1 B; 2NVX L; #chains in the Genus database with same CATH homology 1R0I A; 3PKI A; 2GMG A; 1S2Z A; 1RDG A; 4JAG A; 3KYY A; 2DSX A; 3VPB E; 5H1S c; 1YUX A; 3PKJ A; 2H12 A; 1SMU A; 5MFP A; 1LKO A; 3SS2 A; 3P8B A; 1IW7 D; 2MS3 A; 2Z3Q B; 3J7Z 1; 4XXB B; 4GS7 D; 4AHZ A; 3KYV A; 4K9F A; 2ZIX A; 4G6B A; 4JAF A; 3MSU A; 2QL0 A; 1YK5 A; 4AHX A; 2B5I D; 1E8J A; 1VZI A; 2JI1 A; 1R0J A; 5MLC 3; 1BQ8 A; 2JI2 A; 1YUZ A; 4AI3 A; 2J9U B; 2M6P A; 3KYX A; 5GAD c; 1LKM A; 3MPS A; 5EIN C; 1QCV A; 1JYB A; 2XJT A; 4ZN3 B; 5AN9 H; 1VCX A; 3ZG6 A; 2PYA A; 2CKC A; 1RWD A; 3K35 A; 5GAH c; 1FHH A; 2M6O A; 4AR4 A; 4JAE A; 1DX8 A; 1ZRP A; 5AI3 A; 6RXN A; 2KKD A; 3WWL A; 2A68 D; 2KN9 A; 1BQ9 A; 4AI0 A; 1BE7 A; 5K2M E; 3QVD A; 4AHW A; 4TVM A; 2JI3 A; 3NFP I; 8RXN A; 2A6E D; 2M4Y A; 2A6H D; 2ERJ A; 4E6Y A; 5DM6 1; 2C6A A; 1VZH A; 2M4V A; 3QQC E; 2BE5 D; 5MFZ A; 1RB9 A; 5GAG c; 1OWC A; 1H7V A; 1YK4 A; 4LHL A; 3B0A B; 4B8C D; 3KYU A; 1B13 A; 1B2O A; 1ODH A; 4UY8 1; 4AR5 A; 1T9O A; 2HR5 A; 1NXE A; 7RXN A; 1R0F A; 1T9P A; 1RYQ A; 1SMW A; 2K2D A; 2RDV A; 4U67 1; 2XJR A; 5JVH 1; 1FHM A; 3P2A A; 1DVB A; 1SMM A; 3B08 B; 1BRF A; 1IRO A; 5MF6 A; 4POG A; 4AR3 A; 4JAD A; 1IU6 A; 4YWL A; 4AHY A; 4LHN A; 1T9Q A; 3PWF A; 1R0G A; 1C09 A; 3RYG A; 4XGH A; 2PPT A; 2CR8 A; 5MGN A; 2O5J D; 2C6B A; 4POF A; 3KYW A; 1YV1 A; 3A44 A; 3WWN B; 4AI2 A; 1LKP A; 1Z92 B; 1RYT A; 1R0H A; 1CAA A; 2A69 D; 2XJQ A; 4AR6 A; 4YWM A; 2LCQ A; 3J7Y 1; 4V19 6; 1B71 A; 4ME3 A; 2PSM C; 1NXG A; 2XJP A; 2CKA A; 3LPE B; 2XJV A; 4AI1 A; 2V3B B; 5DM7 1; 3LNL A; 5GAE c; 2VL6 A; 2PVE A; 1LTL A; 2V0F A; 3IU3 I; 1QYB A; 1OWB A; 1NNQ A; 1VZG A; 2NYD A; 1CAD A; 1S24 A; 1IU5 A; 1B2J A; 4WFN 1; 2V0E A; 4RXN A; 3PIP 1; 1WJV A; 5IY0 A; 3RZT A; 4TPU A; 5EIO C; 3PZA A; 3RZ6 A; 5RXN A; 2ERS A; 5AI2 A; 5JVG 1; 2AYJ A; 3PIO 1; 2XJS A; 1RDV A; 2PVX A; 1IRN A; 4ZN1 B; 1BFY A; 2Z3R B; 1S30 A; 2XJU A; 2L0Z A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
