3SS2A

Neutron structure of perdeuterated rubredoxin using 48 hours 3rd pass data
Total Genus 10
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
10
sequence length
51
structure length
51
Chain Sequence
AKWVCKICGYIYDEDAGDPDNGISPGTKFEELPDDWVCPICGAPKSEFEKL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Electron transport
source organism Pyrococcus furiosus dsm 3638
publication title Rapid visualization of hydrogen positions in protein neutron crystallographic structures.
pubmed doi rcsb
molecule keywords Rubredoxin
total genus 10
structure length 51
sequence length 51
ec nomenclature
pdb deposition date 2011-07-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00301 Rubredoxin Rubredoxin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.20.28.10 Mainly Beta Single Sheet Rubrerythrin, domain 2 Rubrerythrin, domain 2 3ss2A00
2V3BB 1DX8A 1RWDA 4RXNA 1IU5A 1T9OA 1LKOA 3KYXA 3MPSA 2KN9A 3PZAA 1R0FA 4YWMA 1B71A 2PYAA 1YK4A 1CADA 1RDVA 1BQ9A 1BQ8A 1C09A 2RDVA 1RYTA 5AI2A 5IY0A 1SMUA 1SMWA 7RXNA 1ZRPA 2DSXA 2KKDA 1CAAA 2K2DA 2GMGA 4AR6A 4ME3A 1BE7A 3KYWA 1T9QA 1BFYA 1JYBA 2PVEA 4K9FA 1YUXA 4AR3A 4YWLA 1R0GA 4AR5A 8RXNA 2PVXA 1B2OA 4AR4A 3QVDA 3KYYA 1R0JA 4TPUA 1YK5A 1LKMA 1S2ZA 1IROA 2QL0A 1S24A 1YUZA 1QCVA 2HR5A 3KYUA 5RXNA 1RB9A 1H7VA 3SS2A 1T9PA 1VCXA 2LCQA 1E8JA 1R0HA 2VL6A 3KYVA 1QYBA 4POFA 4POGA 1RDGA 1IU6A 3RZ6A 1YV1A 1B2JA 1IRNA 6RXNA 1LTLA 3PWFA 3RZTA 1LKPA 1BRFA 1FHMA 5AI3A 3RYGA 1S30A 2M4YA 2MS3A 1R0IA 1B13A 1DVBA 1FHHA 1SMMA 1NNQA 3A44A
chains in the Genus database with same CATH superfamily
1DX8A 1WJVA 2NYDA 2XJVA 4LHNA 1T9OA 3S1QL 3KYXA 4XGHA 3GTGL 3HOWL 1NXEA 1TWCL 2JA7L 4ZN3B 1VZIA 4AI3A 2A68D 1VZHA 1YK4A 5GADc 5M5YL 2HVYC 3MSUA 5IYDL 2RDVA 1TWGL 3K7AL 2JI1A 2JI2A 3H9CA 3GTJL 3I4NL 2BE5D 3S15L 1ZRPA 2KKDA 2K2DA 4AHYA 3S16L 4C2M1 4A3CL 3KYWA 2M4VA 5M5XL 5M5WL 3GTOL 4BY7L 2V0FA 2O5JD 2H12A 4A3LL 1R0GA 3IU3I 1K83L 5GAEc 1PZXA 3RZDL 1WCML 3PIO1 3RZOL 3S2DL 4TPUA 2NVXL 5MFZA 1Y1VL 1LKMA 2QL0A 1YUZA 5FJ8L 2HR5A 4XXBB 4TVMA 3VPBE 3FKIL 2LCQA 1OWBA 3KYVA 1QYBA 3S14L 4POFA 4POGA 3B08B 3S1NL 5IP9L 5C3EL 1LTLA 3PWFA 3RYGA 1Z92B 4E6YA 2WB1P 5JVG1 2A6HD 1SFOL 2JI3A 4C3JL 1Y1WL 1IW7D 4RXNA 2NVQL 4A3BL 3PIP1 2XJQA 3HOUL 2APOB 2E2JL 2KN9A 2JA8L 3H9BA 4YWMA 1ODHA 1I3QL 2WAQP 4X6AL 5JVH1 5MGNA 2CR8A 2AQCA 3J7Z1 2CKCA 2RFKB 4V196 3HOZL 4A93L 4A3IL 3MQKB 5IYCL 2Y0SP 4LHLA 2PVEA 5MLC3 4A3FL 3M3YL 2M6OA 1YUXA 2E2HL 4AR3A 3GTML 4AR5A 4GS7D 8RXNA 1B2OA 4U671 2NVTL 3KYYA 3S17L 2V0EA 2R93L 3K35A 2Z3QB 1YK5A 4B8CD 3M4OL 2C6BA 3KYUA 2ERSA 1TWAL 3LWRB 1E8JA 2VL6A 1I6HL 5C4JL 1P7PA 3ZG6A 1IU6A 2ZIXA 4AHZA 3RZ6A 2A6ED 4Y7NL 6RXNA 1LKPA 1BRFA 1TWFL 3HOYL 5EINC 1S30A 2XJTA 2MS3A 1R0IA 3HJWB 1SMMA 4JAFA 2J9UB 1NNQA 2V3BB 3GTQL 2VUML 5K2ME 3LWVB 1VZGA 3PKJA 2YU9L 1I50L 1LKOA 4BBSL 4BY1L 3P2AA 3I4ML 4JAEA 2PYAA 5C44L 2JA6L 1RYQA 3GTLL 4AYBP 4A3GL 2DSXA 1CAAA 4AR6A 1BE7A 3WWNB 1BFYA 3JR7A 3H3VM 3S1ML 1NXGA 3HJYB 4K9FA 4AHWA 4YWLA 1TWHL 2PVXA 2A69D 2PSMC 1PFWA 4AR4A 3LWQB 1PFYA 3QVDA 5FLML 1R0JA 5DM61 4C3IL 3S2HL 1OWCA 1S2ZA 2E2IL 5IYBL 2R7ZL 3J7Y1 4AI2A 5RXNA 4A3ML 1H7VA 3SS2A 1T9PA 4A3JL 3FDJA 5AN9H 3H0GL 2ERJA 5DM71 1RDGA 4JAGA 4ZN1B 5GAGc 1YV1A 3RZTA 4BXXL 5AI3A 1PFVA 2AUSB 3H99A 3PKIA 5GAHc 2M4YA 4JADA 3PO3L 2L0ZA 1DVBA 1FHHA 2AYJA 2EY4E 3LWPB 3GTPL 5H1Sc 3A44A 1RWDA 3HAXC 1IU5A 3MPSA 5EIOC 5M3FL 3PZAA 1R0FA 4AI0A 1B71A 1CADA 2Z3RB 1RDVA 1BQ9A 3GTKL 1BQ8A 1C09A 5MFPA 3B0AB 2B63L 3CQZL 3PO2L 1RYTA 5AI2A 5IY0A 1SMUA 1SMWA 7RXNA 5M3ML 2NVYL 3H97A 2GMGA 5IP7L 4AI1A 4ME3A 3LPEB 1T9QA 2R92L 4AHXA 3LNLA 1JYBA 3HOXL 1R9TL 2CKAA 4G6BA 4A3DL 2B5ID 3HOVL 3LWOB 2C6AA 4A3KL 4WFN1 2XJUA 2XJRA 1IROA 1S24A 1QCVA 4BBRL 4UY81 3HKZP 3PL5A 3S1RL 1RB9A 2M6PA 1VCXA 1F4LA 1QQTA 5C4XL 1R0HA 4QIWP 2PMZP 1PFUA 3WWLA 3NFPI 2PPTA 4A3EL 1B2JA 1IRNA 2JA5L 3QQCE 2XJPA 1FHMA 4C3HL 4Y52L 2XJSA 3P8BA 5MF6A 1B13A
chains in the Genus database with same CATH topology
2V3BB 1DX8A 1IW7D 1RWDA 1WJVA 1IU5A 2NYDA 4RXNA 2XJVA 5K2ME 4LHNA 1VZGA 2XJQA 1T9OA 3PIP1 3PKJA 1LKOA 3KYXA 3MPSA 4XGHA 2KN9A 5EIOC 1NXEA 3P2AA 4ZN3B 3PZAA 1VZIA 4JAEA 4AI3A 2A68D 1R0FA 4AI0A 4YWMA 1B71A 1VZHA 2PYAA 1ODHA 1YK4A 1CADA 5GADc 2Z3RB 1RDVA 1BQ9A 1NNQA 5JVH1 1BQ8A 5MGNA 1C09A 3MSUA 2CR8A 5MFPA 3B0AB 2RDVA 1RYQA 1RYTA 5AI2A 2JI1A 5IY0A 1SMUA 2JI2A 3J7Z1 2CKCA 1SMWA 4V196 7RXNA 2BE5D 1ZRPA 2DSXA 2KKDA 1CAAA 2K2DA 2GMGA 4AHYA 4AR6A 4AI1A 4ME3A 1BE7A 3KYWA 3LPEB 3WWNB 1T9QA 1BFYA 4AHXA 3LNLA 2M4VA 1JYBA 4LHLA 1NXGA 2PVEA 5MLC3 2CKAA 2M6OA 2V0FA 4K9FA 2O5JD 2H12A 1YUXA 4G6BA 4AHWA 4AR3A 4YWLA 1R0GA 4AR5A 4GS7D 8RXNA 2PVXA 2A69D 1B2OA 2PSMC 2B5ID 3IU3I 4U671 5GAEc 4AR4A 3QVDA 3KYYA 1R0JA 2V0EA 5DM61 3PIO1 3K35A 2C6AA 4TPUA 2Z3QB 5MFZA 4WFN1 1YK5A 2XJUA 1LKMA 1OWCA 1S2ZA 2XJRA 4B8CD 1IROA 2QL0A 1S24A 2C6BA 1YUZA 1QCVA 2HR5A 3KYUA 4XXBB 4AI2A 3J7Y1 4UY81 5RXNA 4TVMA 3VPBE 1RB9A 1H7VA 2M6PA 3SS2A 1T9PA 5H1Sc 2ERSA 1VCXA 2LCQA 5AN9H 1E8JA 1R0HA 1OWBA 2VL6A 3KYVA 1QYBA 3WWLA 2ERJA 5DM71 4POFA 3NFPI 4POGA 3B08B 1RDGA 4JAGA 3ZG6A 4ZN1B 1IU6A 2ZIXA 4AHZA 5GAGc 3RZ6A 2PPTA 1YV1A 1B2JA 1IRNA 2A6ED 6RXNA 3QQCE 1LTLA 3PWFA 2XJPA 3RZTA 1LKPA 1BRFA 1FHMA 5AI3A 3RYGA 1Z92B 4E6YA 5EINC 3PKIA 5GAHc 1S30A 2M4YA 2XJTA 2MS3A 2XJSA 4JADA 3P8BA 5MF6A 1R0IA 5JVG1 2A6HD 1B13A 2L0ZA 2JI3A 1DVBA 1FHHA 1SMMA 2AYJA 4JAFA 2J9UB 3A44A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2V3B B;  1DX8 A;  1RWD A;  4RXN A;  1IU5 A;  1T9O A;  1LKO A;  3KYX A;  3MPS A;  2KN9 A;  3PZA A;  1R0F A;  4YWM A;  1B71 A;  2PYA A;  1YK4 A;  1CAD A;  1RDV A;  1BQ9 A;  1BQ8 A;  1C09 A;  2RDV A;  1RYT A;  5AI2 A;  5IY0 A;  1SMU A;  1SMW A;  7RXN A;  1ZRP A;  2DSX A;  2KKD A;  1CAA A;  2K2D A;  2GMG A;  4AR6 A;  4ME3 A;  1BE7 A;  3KYW A;  1T9Q A;  1BFY A;  1JYB A;  2PVE A;  4K9F A;  1YUX A;  4AR3 A;  4YWL A;  1R0G A;  4AR5 A;  8RXN A;  2PVX A;  1B2O A;  4AR4 A;  3QVD A;  3KYY A;  1R0J A;  4TPU A;  1YK5 A;  1LKM A;  1S2Z A;  1IRO A;  2QL0 A;  1S24 A;  1YUZ A;  1QCV A;  2HR5 A;  3KYU A;  5RXN A;  1RB9 A;  1H7V A;  3SS2 A;  1T9P A;  1VCX A;  2LCQ A;  1E8J A;  1R0H A;  2VL6 A;  3KYV A;  1QYB A;  4POF A;  4POG A;  1RDG A;  1IU6 A;  3RZ6 A;  1YV1 A;  1B2J A;  1IRN A;  6RXN A;  1LTL A;  3PWF A;  3RZT A;  1LKP A;  1BRF A;  1FHM A;  5AI3 A;  3RYG A;  1S30 A;  2M4Y A;  2MS3 A;  1R0I A;  1B13 A;  1DVB A;  1FHH A;  1SMM A;  1NNQ A;  3A44 A; 
#chains in the Genus database with same CATH topology
 1DX8 A;  1WJV A;  2NYD A;  2XJV A;  4LHN A;  1T9O A;  3S1Q L;  3KYX A;  4XGH A;  3GTG L;  3HOW L;  1NXE A;  1TWC L;  2JA7 L;  4ZN3 B;  1VZI A;  4AI3 A;  2A68 D;  1VZH A;  1YK4 A;  5GAD c;  5M5Y L;  2HVY C;  3MSU A;  5IYD L;  2RDV A;  1TWG L;  3K7A L;  2JI1 A;  2JI2 A;  3H9C A;  3GTJ L;  3I4N L;  2BE5 D;  3S15 L;  1ZRP A;  2KKD A;  2K2D A;  4AHY A;  3S16 L;  4C2M 1;  4A3C L;  3KYW A;  2M4V A;  5M5X L;  5M5W L;  3GTO L;  4BY7 L;  2V0F A;  2O5J D;  2H12 A;  4A3L L;  1R0G A;  3IU3 I;  1K83 L;  5GAE c;  1PZX A;  3RZD L;  1WCM L;  3PIO 1;  3RZO L;  3S2D L;  4TPU A;  2NVX L;  5MFZ A;  1Y1V L;  1LKM A;  2QL0 A;  1YUZ A;  5FJ8 L;  2HR5 A;  4XXB B;  4TVM A;  3VPB E;  3FKI L;  2LCQ A;  1OWB A;  3KYV A;  1QYB A;  3S14 L;  4POF A;  4POG A;  3B08 B;  3S1N L;  5IP9 L;  5C3E L;  1LTL A;  3PWF A;  3RYG A;  1Z92 B;  4E6Y A;  2WB1 P;  5JVG 1;  2A6H D;  1SFO L;  2JI3 A;  4C3J L;  1Y1W L;  1IW7 D;  4RXN A;  2NVQ L;  4A3B L;  3PIP 1;  2XJQ A;  3HOU L;  2APO B;  2E2J L;  2KN9 A;  2JA8 L;  3H9B A;  4YWM A;  1ODH A;  1I3Q L;  2WAQ P;  4X6A L;  5JVH 1;  5MGN A;  2CR8 A;  2AQC A;  3J7Z 1;  2CKC A;  2RFK B;  4V19 6;  3HOZ L;  4A93 L;  4A3I L;  3MQK B;  5IYC L;  2Y0S P;  4LHL A;  2PVE A;  5MLC 3;  4A3F L;  3M3Y L;  2M6O A;  1YUX A;  2E2H L;  4AR3 A;  3GTM L;  4AR5 A;  4GS7 D;  8RXN A;  1B2O A;  4U67 1;  2NVT L;  3KYY A;  3S17 L;  2V0E A;  2R93 L;  3K35 A;  2Z3Q B;  1YK5 A;  4B8C D;  3M4O L;  2C6B A;  3KYU A;  2ERS A;  1TWA L;  3LWR B;  1E8J A;  2VL6 A;  1I6H L;  5C4J L;  1P7P A;  3ZG6 A;  1IU6 A;  2ZIX A;  4AHZ A;  3RZ6 A;  2A6E D;  4Y7N L;  6RXN A;  1LKP A;  1BRF A;  1TWF L;  3HOY L;  5EIN C;  1S30 A;  2XJT A;  2MS3 A;  1R0I A;  3HJW B;  1SMM A;  4JAF A;  2J9U B;  1NNQ A;  2V3B B;  3GTQ L;  2VUM L;  5K2M E;  3LWV B;  1VZG A;  3PKJ A;  2YU9 L;  1I50 L;  1LKO A;  4BBS L;  4BY1 L;  3P2A A;  3I4M L;  4JAE A;  2PYA A;  5C44 L;  2JA6 L;  1RYQ A;  3GTL L;  4AYB P;  4A3G L;  2DSX A;  1CAA A;  4AR6 A;  1BE7 A;  3WWN B;  1BFY A;  3JR7 A;  3H3V M;  3S1M L;  1NXG A;  3HJY B;  4K9F A;  4AHW A;  4YWL A;  1TWH L;  2PVX A;  2A69 D;  2PSM C;  1PFW A;  4AR4 A;  3LWQ B;  1PFY A;  3QVD A;  5FLM L;  1R0J A;  5DM6 1;  4C3I L;  3S2H L;  1OWC A;  1S2Z A;  2E2I L;  5IYB L;  2R7Z L;  3J7Y 1;  4AI2 A;  5RXN A;  4A3M L;  1H7V A;  3SS2 A;  1T9P A;  4A3J L;  3FDJ A;  5AN9 H;  3H0G L;  2ERJ A;  5DM7 1;  1RDG A;  4JAG A;  4ZN1 B;  5GAG c;  1YV1 A;  3RZT A;  4BXX L;  5AI3 A;  1PFV A;  2AUS B;  3H99 A;  3PKI A;  5GAH c;  2M4Y A;  4JAD A;  3PO3 L;  2L0Z A;  1DVB A;  1FHH A;  2AYJ A;  2EY4 E;  3LWP B;  3GTP L;  5H1S c;  3A44 A;  1RWD A;  3HAX C;  1IU5 A;  3MPS A;  5EIO C;  5M3F L;  3PZA A;  1R0F A;  4AI0 A;  1B71 A;  1CAD A;  2Z3R B;  1RDV A;  1BQ9 A;  3GTK L;  1BQ8 A;  1C09 A;  5MFP A;  3B0A B;  2B63 L;  3CQZ L;  3PO2 L;  1RYT A;  5AI2 A;  5IY0 A;  1SMU A;  1SMW A;  7RXN A;  5M3M L;  2NVY L;  3H97 A;  2GMG A;  5IP7 L;  4AI1 A;  4ME3 A;  3LPE B;  1T9Q A;  2R92 L;  4AHX A;  3LNL A;  1JYB A;  3HOX L;  1R9T L;  2CKA A;  4G6B A;  4A3D L;  2B5I D;  3HOV L;  3LWO B;  2C6A A;  4A3K L;  4WFN 1;  2XJU A;  2XJR A;  1IRO A;  1S24 A;  1QCV A;  4BBR L;  4UY8 1;  3HKZ P;  3PL5 A;  3S1R L;  1RB9 A;  2M6P A;  1VCX A;  1F4L A;  1QQT A;  5C4X L;  1R0H A;  4QIW P;  2PMZ P;  1PFU A;  3WWL A;  3NFP I;  2PPT A;  4A3E L;  1B2J A;  1IRN A;  2JA5 L;  3QQC E;  2XJP A;  1FHM A;  4C3H L;  4Y52 L;  2XJS A;  3P8B A;  5MF6 A;  1B13 A; 
#chains in the Genus database with same CATH homology
 2V3B B;  1DX8 A;  1IW7 D;  1RWD A;  1WJV A;  1IU5 A;  2NYD A;  4RXN A;  2XJV A;  5K2M E;  4LHN A;  1VZG A;  2XJQ A;  1T9O A;  3PIP 1;  3PKJ A;  1LKO A;  3KYX A;  3MPS A;  4XGH A;  2KN9 A;  5EIO C;  1NXE A;  3P2A A;  4ZN3 B;  3PZA A;  1VZI A;  4JAE A;  4AI3 A;  2A68 D;  1R0F A;  4AI0 A;  4YWM A;  1B71 A;  1VZH A;  2PYA A;  1ODH A;  1YK4 A;  1CAD A;  5GAD c;  2Z3R B;  1RDV A;  1BQ9 A;  1NNQ A;  5JVH 1;  1BQ8 A;  5MGN A;  1C09 A;  3MSU A;  2CR8 A;  5MFP A;  3B0A B;  2RDV A;  1RYQ A;  1RYT A;  5AI2 A;  2JI1 A;  5IY0 A;  1SMU A;  2JI2 A;  3J7Z 1;  2CKC A;  1SMW A;  4V19 6;  7RXN A;  2BE5 D;  1ZRP A;  2DSX A;  2KKD A;  1CAA A;  2K2D A;  2GMG A;  4AHY A;  4AR6 A;  4AI1 A;  4ME3 A;  1BE7 A;  3KYW A;  3LPE B;  3WWN B;  1T9Q A;  1BFY A;  4AHX A;  3LNL A;  2M4V A;  1JYB A;  4LHL A;  1NXG A;  2PVE A;  5MLC 3;  2CKA A;  2M6O A;  2V0F A;  4K9F A;  2O5J D;  2H12 A;  1YUX A;  4G6B A;  4AHW A;  4AR3 A;  4YWL A;  1R0G A;  4AR5 A;  4GS7 D;  8RXN A;  2PVX A;  2A69 D;  1B2O A;  2PSM C;  2B5I D;  3IU3 I;  4U67 1;  5GAE c;  4AR4 A;  3QVD A;  3KYY A;  1R0J A;  2V0E A;  5DM6 1;  3PIO 1;  3K35 A;  2C6A A;  4TPU A;  2Z3Q B;  5MFZ A;  4WFN 1;  1YK5 A;  2XJU A;  1LKM A;  1OWC A;  1S2Z A;  2XJR A;  4B8C D;  1IRO A;  2QL0 A;  1S24 A;  2C6B A;  1YUZ A;  1QCV A;  2HR5 A;  3KYU A;  4XXB B;  4AI2 A;  3J7Y 1;  4UY8 1;  5RXN A;  4TVM A;  3VPB E;  1RB9 A;  1H7V A;  2M6P A;  3SS2 A;  1T9P A;  5H1S c;  2ERS A;  1VCX A;  2LCQ A;  5AN9 H;  1E8J A;  1R0H A;  1OWB A;  2VL6 A;  3KYV A;  1QYB A;  3WWL A;  2ERJ A;  5DM7 1;  4POF A;  3NFP I;  4POG A;  3B08 B;  1RDG A;  4JAG A;  3ZG6 A;  4ZN1 B;  1IU6 A;  2ZIX A;  4AHZ A;  5GAG c;  3RZ6 A;  2PPT A;  1YV1 A;  1B2J A;  1IRN A;  2A6E D;  6RXN A;  3QQC E;  1LTL A;  3PWF A;  2XJP A;  3RZT A;  1LKP A;  1BRF A;  1FHM A;  5AI3 A;  3RYG A;  1Z92 B;  4E6Y A;  5EIN C;  3PKI A;  5GAH c;  1S30 A;  2M4Y A;  2XJT A;  2MS3 A;  2XJS A;  4JAD A;  3P8B A;  5MF6 A;  1R0I A;  5JVG 1;  2A6H D;  1B13 A;  2L0Z A;  2JI3 A;  1DVB A;  1FHH A;  1SMM A;  2AYJ A;  4JAF A;  2J9U B;  3A44 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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