1IRNA

Rubredoxin (zn-substituted) at 1.2 angstroms resolution
Total Genus 9
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
9
sequence length
53
structure length
53
Chain Sequence
MKKYTCTVCGYIYNPEDGDPDNGVNPGTDFKDIPDDWVCPLCGVGKDQFEEVE
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Electron transport
publication title Zinc- and iron-rubredoxins from Clostridium pasteurianum at atomic resolution: a high-precision model of a ZnS4 coordination unit in a protein.
pubmed doi rcsb
molecule keywords RUBREDOXIN
total genus 9
structure length 53
sequence length 53
ec nomenclature
pdb deposition date 1995-12-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00301 Rubredoxin Rubredoxin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.20.28.10 Mainly Beta Single Sheet Rubrerythrin, domain 2 Rubrerythrin, domain 2 1irnA00
1IU6A 1CADA 1YK5A 2V3BB 4YWMA 1YUXA 4AR4A 2KKDA 1LKOA 4AR5A 1YUZA 1T9OA 1YV1A 2GMGA 2PYAA 1S24A 4ME3A 1BQ9A 4AR6A 1IU5A 3MPSA 3PWFA 3RYGA 1FHMA 1T9QA 1DVBA 3SS2A 1E8JA 1RYTA 3A44A 1BFYA 4TPUA 6RXNA 1QYBA 3KYUA 1R0FA 1R0JA 1R0HA 1S2ZA 1RDGA 1R0IA 2KN9A 1B2JA 1B71A 1B13A 3KYVA 5RXNA 1BRFA 1RDVA 3KYYA 2M4YA 2VL6A 4YWLA 7RXNA 1NNQA 3KYXA 1IROA 1VCXA 1IRNA 4POGA 2RDVA 5IY0A 4RXNA 3RZ6A 3RZTA 1LKPA 1S30A 1SMUA 3PZAA 1H7VA 1SMMA 8RXNA 2DSXA 2HR5A 1C09A 4K9FA 1BE7A 1RWDA 1YK4A 1ZRPA 2K2DA 1JYBA 1B2OA 5AI3A 1LKMA 5AI2A 2PVXA 1QCVA 3QVDA 2LCQA 2QL0A 2MS3A 4POFA 1LTLA 4AR3A 1DX8A 1SMWA 1R0GA 1CAAA 1FHHA 1T9PA 1BQ8A 2PVEA 3KYWA 1RB9A
chains in the Genus database with same CATH superfamily
3MQKB 1IU6A 1YK5A 2V3BB 5M3FL 1I50L 2C6BA 1VZHA 4AR4A 4AHWA 3NFPI 4XXBB 4AR5A 1YUZA 3LPEB 3HOVL 1YV1A 3GTGL 1TWCL 4AR6A 3IU3I 2NVYL 4BBRL 1R9TL 3SS2A 3H99A 3GTQL 4A3CL 1NXGA 5DM71 5JVG1 3KYUA 3GTPL 4LHNA 2A69D 3LWVB 3KYVA 3GTML 3K35A 3PIO1 3FDJA 5AN9H 3VPBE 4C2M1 5FJ8L 3S15L 4AI3A 3KYYA 3GTJL 4A3IL 2Z3QB 1NNQA 1OWCA 3FKIL 2RDVA 1QQTA 4A93L 4GS7D 3HOZL 2O5JD 2E2HL 1LKPA 1S30A 5C4XL 2XJQA 3HOYL 2J9UB 8RXNA 5M5WL 1RYQA 1BE7A 2K2DA 4BXXL 4C3JL 4A3LL 5EINC 2A6HD 4XGHA 1QCVA 3QVDA 5C4JL 2QL0A 2AQCA 3B0AB 2A68D 1SMWA 1TWHL 2M4VA 2NVQL 1CAAA 2A6ED 5EIOC 3KYWA 4YWMA 2JA5L 4C3IL 1YUXA 2E2JL 4AI1A 1LKOA 2XJPA 3H3VM 1SFOL 1S24A 3H0GL 1PFWA 2B5ID 1TWAL 3GTKL 3LWRB 2PSMC 1DVBA 3LNLA 5MLC3 2V0FA 5M5YL 3PO3L 1E8JA 1RYTA 4BY1L 3A44A 4LHLA 4A3GL 1QYBA 1R0JA 1RDGA 4V196 5C3EL 2KN9A 2Y0SP 3S1QL 2APOB 5IP7L 1PFYA 3S1NL 1RDVA 1Z92B 3H9CA 3K7AL 1IRNA 4POGA 3B08B 4A3FL 3GTLL 5IP9L 3J7Y1 2DSXA 4JAEA 3HOWL 3MSUA 5GAGc 1ZRPA 5AI3A 1LKMA 5AI2A 2CKCA 2XJUA 2LCQA 2NVXL 5MF6A 2R7ZL 2M6OA 4AR3A 4QIWP 5IYDL 5DM61 1NXEA 1VZGA 1R0GA 4BBSL 4Y7NL 5FLML 1T9PA 1BQ8A 2PVEA 4A3KL 4AHXA 2JI3A 1CADA 5IYBL 3HJWB 1WJVA 5MFZA 1OWBA 1T9OA 2PYAA 1BQ9A 3MPSA 1FHMA 2RFKB 3GTOL 5GADc 2EY4E 3LWPB 1BFYA 1R0HA 1S2ZA 4AHYA 1Y1VL 1R0IA 2B63L 2XJSA 3JR7A 4AI2A 1B2JA 1B71A 5JVH1 4B8CD 5RXNA 1BRFA 1I3QL 3S2DL 2CKAA 3PL5A 4JAGA 5MGNA 4ZN1B 2M4YA 2VL6A 3P8BA 4YWLA 1F4LA 7RXNA 3KYXA 1IROA 3LWOB 2JA6L 1VCXA 2WAQP 2XJVA 4C3HL 4JADA 5IY0A 3RZ6A 3RZTA 2ERSA 5C44L 5M3ML 1SMMA 4TVMA 3M3YL 1PFVA 4E6YA 1K83L 4X6AL 5IYCL 2R92L 1C09A 1RWDA 1PZXA 1VZIA 3RZDL 2PVXA 2NYDA 4JAFA 3J7Z1 2MS3A 3HOXL 4POFA 4A3ML 3ZG6A 1LTLA 3I4ML 4BY7L 2XJTA 3PKIA 3S1ML 1DX8A 4AHZA 4U671 2JI1A 4A3EL 2VUML 3LWQB 4G6BA 3CQZL 2YU9L 2ZIXA 1IW7D 3H97A 1I6HL 3I4NL 2KKDA 2V0EA 3M4OL 4WFN1 2JA8L 2PMZP 2GMGA 3HJYB 4ME3A 2R93L 5GAHc 1IU5A 3PWFA 3RYGA 1TWFL 1T9QA 4Y52L 1PFUA 2AYJA 2AUSB 5MFPA 2H12A 4TPUA 4A3JL 6RXNA 1R0FA 2M6PA 3P2AA 3HAXC 4AI0A 2WB1P 5GAEc 1B13A 2XJRA 3WWNB 3RZOL 2L0ZA 4UY81 2CR8A 2C6AA 1P7PA 5K2ME 4AYBP 4RXNA 2PPTA 1SMUA 3H9BA 3PZAA 1H7VA 3S17L 2NVTL 2ERJA 3HKZP 2Z3RB 3S2HL 2HR5A 3PKJA 3HOUL 4K9FA 3QQCE 1YK4A 1ODHA 4A3BL 1JYBA 1B2OA 1TWGL 3S1RL 3PO2L 5M5XL 2HVYC 1WCML 3WWLA 2E2IL 2JA7L 1Y1WL 3PIP1 3S16L 4A3DL 2JI2A 4ZN3B 1FHHA 5H1Sc 2BE5D 3S14L 1RB9A
chains in the Genus database with same CATH topology
1IU6A 4AHXA 2JI3A 1CADA 1YK5A 2V3BB 4YWMA 1YUXA 2C6BA 4AI1A 1VZHA 4AR4A 1WJVA 5MFZA 4AHWA 2KKDA 2V0EA 3NFPI 1LKOA 4XXBB 4AR5A 4WFN1 2XJPA 1OWBA 1YUZA 1T9OA 3LPEB 1YV1A 2GMGA 2PYAA 1S24A 4ME3A 1BQ9A 2B5ID 4AR6A 5GAHc 1IU5A 3MPSA 3PWFA 3RYGA 1FHMA 2PSMC 1T9QA 3IU3I 1DVBA 3LNLA 5MLC3 3SS2A 2V0FA 5GADc 2AYJA 5MFPA 1NXGA 2H12A 1E8JA 1RYTA 5DM71 3A44A 4LHLA 5JVG1 1BFYA 4TPUA 6RXNA 1QYBA 3KYUA 1R0FA 1R0JA 2M6PA 1R0HA 1S2ZA 3P2AA 1RDGA 4AHYA 1R0IA 4AI0A 4V196 2XJSA 4AI2A 4LHNA 2A69D 2KN9A 1B2JA 5GAEc 1B71A 1B13A 3KYVA 5JVH1 2XJRA 4B8CD 5RXNA 1BRFA 3K35A 3PIO1 2CKAA 5AN9H 3VPBE 3WWNB 4JAGA 1RDVA 4AI3A 5MGNA 4ZN1B 3KYYA 2M4YA 2VL6A 3P8BA 4YWLA 1Z92B 2Z3QB 7RXNA 1NNQA 3KYXA 1IROA 1OWCA 2L0ZA 1VCXA 1IRNA 4POGA 2XJVA 4UY81 2CR8A 2RDVA 3B08B 2C6AA 4JADA 5IY0A 4GS7D 5K2ME 2O5JD 4RXNA 3RZ6A 3RZTA 1LKPA 2ERSA 2PPTA 1S30A 2XJQA 1SMUA 3PZAA 1H7VA 1SMMA 4TVMA 2J9UB 4E6YA 2ERJA 2Z3RB 3J7Y1 8RXNA 2DSXA 2HR5A 3PKJA 4JAEA 3MSUA 1C09A 4K9FA 5GAGc 1RYQA 3QQCE 1BE7A 1RWDA 1YK4A 1ZRPA 1ODHA 2K2DA 1JYBA 1B2OA 1VZIA 5AI3A 5EINC 1LKMA 5AI2A 2CKCA 2PVXA 2A6HD 2XJUA 1QCVA 2NYDA 4XGHA 3QVDA 2LCQA 2QL0A 4JAFA 5MF6A 3J7Z1 2MS3A 4POFA 3WWLA 3ZG6A 1LTLA 3B0AB 2M6OA 2XJTA 2A68D 3PKIA 4AR3A 1DX8A 3PIP1 4AHZA 4U671 2JI1A 1SMWA 5DM61 1NXEA 1VZGA 2M4VA 1R0GA 1CAAA 2JI2A 4ZN3B 4G6BA 1FHHA 2A6ED 5H1Sc 1T9PA 1BQ8A 2BE5D 2PVEA 2ZIXA 1IW7D 5EIOC 3KYWA 1RB9A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1IU6 A;  1CAD A;  1YK5 A;  2V3B B;  4YWM A;  1YUX A;  4AR4 A;  2KKD A;  1LKO A;  4AR5 A;  1YUZ A;  1T9O A;  1YV1 A;  2GMG A;  2PYA A;  1S24 A;  4ME3 A;  1BQ9 A;  4AR6 A;  1IU5 A;  3MPS A;  3PWF A;  3RYG A;  1FHM A;  1T9Q A;  1DVB A;  3SS2 A;  1E8J A;  1RYT A;  3A44 A;  1BFY A;  4TPU A;  6RXN A;  1QYB A;  3KYU A;  1R0F A;  1R0J A;  1R0H A;  1S2Z A;  1RDG A;  1R0I A;  2KN9 A;  1B2J A;  1B71 A;  1B13 A;  3KYV A;  5RXN A;  1BRF A;  1RDV A;  3KYY A;  2M4Y A;  2VL6 A;  4YWL A;  7RXN A;  1NNQ A;  3KYX A;  1IRO A;  1VCX A;  1IRN A;  4POG A;  2RDV A;  5IY0 A;  4RXN A;  3RZ6 A;  3RZT A;  1LKP A;  1S30 A;  1SMU A;  3PZA A;  1H7V A;  1SMM A;  8RXN A;  2DSX A;  2HR5 A;  1C09 A;  4K9F A;  1BE7 A;  1RWD A;  1YK4 A;  1ZRP A;  2K2D A;  1JYB A;  1B2O A;  5AI3 A;  1LKM A;  5AI2 A;  2PVX A;  1QCV A;  3QVD A;  2LCQ A;  2QL0 A;  2MS3 A;  4POF A;  1LTL A;  4AR3 A;  1DX8 A;  1SMW A;  1R0G A;  1CAA A;  1FHH A;  1T9P A;  1BQ8 A;  2PVE A;  3KYW A;  1RB9 A; 
#chains in the Genus database with same CATH topology
 3MQK B;  1IU6 A;  1YK5 A;  2V3B B;  5M3F L;  1I50 L;  2C6B A;  1VZH A;  4AR4 A;  4AHW A;  3NFP I;  4XXB B;  4AR5 A;  1YUZ A;  3LPE B;  3HOV L;  1YV1 A;  3GTG L;  1TWC L;  4AR6 A;  3IU3 I;  2NVY L;  4BBR L;  1R9T L;  3SS2 A;  3H99 A;  3GTQ L;  4A3C L;  1NXG A;  5DM7 1;  5JVG 1;  3KYU A;  3GTP L;  4LHN A;  2A69 D;  3LWV B;  3KYV A;  3GTM L;  3K35 A;  3PIO 1;  3FDJ A;  5AN9 H;  3VPB E;  4C2M 1;  5FJ8 L;  3S15 L;  4AI3 A;  3KYY A;  3GTJ L;  4A3I L;  2Z3Q B;  1NNQ A;  1OWC A;  3FKI L;  2RDV A;  1QQT A;  4A93 L;  4GS7 D;  3HOZ L;  2O5J D;  2E2H L;  1LKP A;  1S30 A;  5C4X L;  2XJQ A;  3HOY L;  2J9U B;  8RXN A;  5M5W L;  1RYQ A;  1BE7 A;  2K2D A;  4BXX L;  4C3J L;  4A3L L;  5EIN C;  2A6H D;  4XGH A;  1QCV A;  3QVD A;  5C4J L;  2QL0 A;  2AQC A;  3B0A B;  2A68 D;  1SMW A;  1TWH L;  2M4V A;  2NVQ L;  1CAA A;  2A6E D;  5EIO C;  3KYW A;  4YWM A;  2JA5 L;  4C3I L;  1YUX A;  2E2J L;  4AI1 A;  1LKO A;  2XJP A;  3H3V M;  1SFO L;  1S24 A;  3H0G L;  1PFW A;  2B5I D;  1TWA L;  3GTK L;  3LWR B;  2PSM C;  1DVB A;  3LNL A;  5MLC 3;  2V0F A;  5M5Y L;  3PO3 L;  1E8J A;  1RYT A;  4BY1 L;  3A44 A;  4LHL A;  4A3G L;  1QYB A;  1R0J A;  1RDG A;  4V19 6;  5C3E L;  2KN9 A;  2Y0S P;  3S1Q L;  2APO B;  5IP7 L;  1PFY A;  3S1N L;  1RDV A;  1Z92 B;  3H9C A;  3K7A L;  1IRN A;  4POG A;  3B08 B;  4A3F L;  3GTL L;  5IP9 L;  3J7Y 1;  2DSX A;  4JAE A;  3HOW L;  3MSU A;  5GAG c;  1ZRP A;  5AI3 A;  1LKM A;  5AI2 A;  2CKC A;  2XJU A;  2LCQ A;  2NVX L;  5MF6 A;  2R7Z L;  2M6O A;  4AR3 A;  4QIW P;  5IYD L;  5DM6 1;  1NXE A;  1VZG A;  1R0G A;  4BBS L;  4Y7N L;  5FLM L;  1T9P A;  1BQ8 A;  2PVE A;  4A3K L;  4AHX A;  2JI3 A;  1CAD A;  5IYB L;  3HJW B;  1WJV A;  5MFZ A;  1OWB A;  1T9O A;  2PYA A;  1BQ9 A;  3MPS A;  1FHM A;  2RFK B;  3GTO L;  5GAD c;  2EY4 E;  3LWP B;  1BFY A;  1R0H A;  1S2Z A;  4AHY A;  1Y1V L;  1R0I A;  2B63 L;  2XJS A;  3JR7 A;  4AI2 A;  1B2J A;  1B71 A;  5JVH 1;  4B8C D;  5RXN A;  1BRF A;  1I3Q L;  3S2D L;  2CKA A;  3PL5 A;  4JAG A;  5MGN A;  4ZN1 B;  2M4Y A;  2VL6 A;  3P8B A;  4YWL A;  1F4L A;  7RXN A;  3KYX A;  1IRO A;  3LWO B;  2JA6 L;  1VCX A;  2WAQ P;  2XJV A;  4C3H L;  4JAD A;  5IY0 A;  3RZ6 A;  3RZT A;  2ERS A;  5C44 L;  5M3M L;  1SMM A;  4TVM A;  3M3Y L;  1PFV A;  4E6Y A;  1K83 L;  4X6A L;  5IYC L;  2R92 L;  1C09 A;  1RWD A;  1PZX A;  1VZI A;  3RZD L;  2PVX A;  2NYD A;  4JAF A;  3J7Z 1;  2MS3 A;  3HOX L;  4POF A;  4A3M L;  3ZG6 A;  1LTL A;  3I4M L;  4BY7 L;  2XJT A;  3PKI A;  3S1M L;  1DX8 A;  4AHZ A;  4U67 1;  2JI1 A;  4A3E L;  2VUM L;  3LWQ B;  4G6B A;  3CQZ L;  2YU9 L;  2ZIX A;  1IW7 D;  3H97 A;  1I6H L;  3I4N L;  2KKD A;  2V0E A;  3M4O L;  4WFN 1;  2JA8 L;  2PMZ P;  2GMG A;  3HJY B;  4ME3 A;  2R93 L;  5GAH c;  1IU5 A;  3PWF A;  3RYG A;  1TWF L;  1T9Q A;  4Y52 L;  1PFU A;  2AYJ A;  2AUS B;  5MFP A;  2H12 A;  4TPU A;  4A3J L;  6RXN A;  1R0F A;  2M6P A;  3P2A A;  3HAX C;  4AI0 A;  2WB1 P;  5GAE c;  1B13 A;  2XJR A;  3WWN B;  3RZO L;  2L0Z A;  4UY8 1;  2CR8 A;  2C6A A;  1P7P A;  5K2M E;  4AYB P;  4RXN A;  2PPT A;  1SMU A;  3H9B A;  3PZA A;  1H7V A;  3S17 L;  2NVT L;  2ERJ A;  3HKZ P;  2Z3R B;  3S2H L;  2HR5 A;  3PKJ A;  3HOU L;  4K9F A;  3QQC E;  1YK4 A;  1ODH A;  4A3B L;  1JYB A;  1B2O A;  1TWG L;  3S1R L;  3PO2 L;  5M5X L;  2HVY C;  1WCM L;  3WWL A;  2E2I L;  2JA7 L;  1Y1W L;  3PIP 1;  3S16 L;  4A3D L;  2JI2 A;  4ZN3 B;  1FHH A;  5H1S c;  2BE5 D;  3S14 L;  1RB9 A; 
#chains in the Genus database with same CATH homology
 1IU6 A;  4AHX A;  2JI3 A;  1CAD A;  1YK5 A;  2V3B B;  4YWM A;  1YUX A;  2C6B A;  4AI1 A;  1VZH A;  4AR4 A;  1WJV A;  5MFZ A;  4AHW A;  2KKD A;  2V0E A;  3NFP I;  1LKO A;  4XXB B;  4AR5 A;  4WFN 1;  2XJP A;  1OWB A;  1YUZ A;  1T9O A;  3LPE B;  1YV1 A;  2GMG A;  2PYA A;  1S24 A;  4ME3 A;  1BQ9 A;  2B5I D;  4AR6 A;  5GAH c;  1IU5 A;  3MPS A;  3PWF A;  3RYG A;  1FHM A;  2PSM C;  1T9Q A;  3IU3 I;  1DVB A;  3LNL A;  5MLC 3;  3SS2 A;  2V0F A;  5GAD c;  2AYJ A;  5MFP A;  1NXG A;  2H12 A;  1E8J A;  1RYT A;  5DM7 1;  3A44 A;  4LHL A;  5JVG 1;  1BFY A;  4TPU A;  6RXN A;  1QYB A;  3KYU A;  1R0F A;  1R0J A;  2M6P A;  1R0H A;  1S2Z A;  3P2A A;  1RDG A;  4AHY A;  1R0I A;  4AI0 A;  4V19 6;  2XJS A;  4AI2 A;  4LHN A;  2A69 D;  2KN9 A;  1B2J A;  5GAE c;  1B71 A;  1B13 A;  3KYV A;  5JVH 1;  2XJR A;  4B8C D;  5RXN A;  1BRF A;  3K35 A;  3PIO 1;  2CKA A;  5AN9 H;  3VPB E;  3WWN B;  4JAG A;  1RDV A;  4AI3 A;  5MGN A;  4ZN1 B;  3KYY A;  2M4Y A;  2VL6 A;  3P8B A;  4YWL A;  1Z92 B;  2Z3Q B;  7RXN A;  1NNQ A;  3KYX A;  1IRO A;  1OWC A;  2L0Z A;  1VCX A;  1IRN A;  4POG A;  2XJV A;  4UY8 1;  2CR8 A;  2RDV A;  3B08 B;  2C6A A;  4JAD A;  5IY0 A;  4GS7 D;  5K2M E;  2O5J D;  4RXN A;  3RZ6 A;  3RZT A;  1LKP A;  2ERS A;  2PPT A;  1S30 A;  2XJQ A;  1SMU A;  3PZA A;  1H7V A;  1SMM A;  4TVM A;  2J9U B;  4E6Y A;  2ERJ A;  2Z3R B;  3J7Y 1;  8RXN A;  2DSX A;  2HR5 A;  3PKJ A;  4JAE A;  3MSU A;  1C09 A;  4K9F A;  5GAG c;  1RYQ A;  3QQC E;  1BE7 A;  1RWD A;  1YK4 A;  1ZRP A;  1ODH A;  2K2D A;  1JYB A;  1B2O A;  1VZI A;  5AI3 A;  5EIN C;  1LKM A;  5AI2 A;  2CKC A;  2PVX A;  2A6H D;  2XJU A;  1QCV A;  2NYD A;  4XGH A;  3QVD A;  2LCQ A;  2QL0 A;  4JAF A;  5MF6 A;  3J7Z 1;  2MS3 A;  4POF A;  3WWL A;  3ZG6 A;  1LTL A;  3B0A B;  2M6O A;  2XJT A;  2A68 D;  3PKI A;  4AR3 A;  1DX8 A;  3PIP 1;  4AHZ A;  4U67 1;  2JI1 A;  1SMW A;  5DM6 1;  1NXE A;  1VZG A;  2M4V A;  1R0G A;  1CAA A;  2JI2 A;  4ZN3 B;  4G6B A;  1FHH A;  2A6E D;  5H1S c;  1T9P A;  1BQ8 A;  2BE5 D;  2PVE A;  2ZIX A;  1IW7 D;  5EIO C;  3KYW A;  1RB9 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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