4BY7L

Elongating rna polymerase ii-bye1 tld complex
Total Genus 2
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
2
sequence length
46
structure length
46
Chain Sequence
ATLKYICAECSSKLSLSRTDAVRCKDCGHRILLKARTKRLVQFEAR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transcription
source organism Saccharomyces cerevisiae
publication title Structures of RNA polymerase II complexes with Bye1, a chromatin-binding PHF3/DIDO homologue.
pubmed doi rcsb
molecule keywords DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1
total genus 2
structure length 46
sequence length 46
ec nomenclature
pdb deposition date 2013-07-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
L PF03604 DNA_RNApol_7kD DNA directed RNA polymerase, 7 kDa subunit
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.20.28.30 Mainly Beta Single Sheet Rubrerythrin, domain 2 RNA polymerase ii, chain L 4by7L00
3HKZP 3S1ML 3HOYL 2R92L 1SFOL 4BY1L 2VUML 1TWGL 3GTML 1I50L 3GTGL 2JA6L 2R93L 3HOVL 2B63L 4A3EL 2JA8L 3RZDL 5IYCL 3S1RL 1Y1WL 4A3CL 2YU9L 3S16L 3GTJL 3S15L 2E2HL 3I4ML 5C3EL 3H0GL 5C44L 1K83L 4A3FL 3S2DL 3M4OL 4BBRL 1TWAL 3HOWL 4A3DL 3RZOL 3GTLL 3S1QL 2WAQP 3HOZL 1TWFL 4C3IL 3K7AL 4A3KL 1I3QL 4A3BL 3GTKL 5FJ8L 1TWCL 3HOXL 4A3ML 2JA5L 3HOUL 5M5WL 1TWHL 5IP7L 5IP9L 4C3HL 4A3IL 2NVXL 3H3VM 4BBSL 2E2IL 4A3JL 1R9TL 4BXXL 2PMZP 5IYBL 4Y52L 3M3YL 5M5XL 5C4XL 1I6HL 5M3ML 3S17L 5FLML 2NVQL 3GTPL 3S14L 3GTQL 3I4NL 2WB1P 4A3GL 4Y7NL 4QIWP 3GTOL 5M3FL 5IYDL 3FKIL 3PO2L 4C3JL 5C4JL 4A93L 2NVYL 4A3LL 4BY7L 3PO3L 1Y1VL 2E2JL 4AYBP 4X6AL 2Y0SP 1WCML 3S2HL 3S1NL 2NVTL 2JA7L 4C2M1 3CQZL 5M5YL 2R7ZL
chains in the Genus database with same CATH superfamily
1SFOL 2M4VA 1C09A 1RB9A 1TWGL 4TPUA 1S30A 1R0JA 3HOVL 3VPBE 2B63L 4A3EL 5DM71 5MLC3 3SS2A 2YU9L 3GTJL 1T9QA 3S15L 2AYJA 2V3BB 1BRFA 5C44L 2PVEA 3M4OL 2XJQA 5EIOC 4POFA 2WAQP 4B8CD 5RXNA 1PFWA 1B71A 2JA5L 3K35A 5M5WL 1TWHL 5IP9L 2NVXL 1T9OA 1P7PA 3B08B 4AR5A 5MFZA 2Z3RB 5IYBL 3JR7A 3PWFA 5EINC 4XXBB 2H12A 2Z3QB 3S17L 5FLML 4POGA 2RDVA 3LWPB 2NVQL 1R0IA 2VL6A 1B13A 3J7Y1 1VZIA 8RXNA 4Y7NL 3PL5A 4GS7D 1LKOA 3FKIL 1FHMA 2NVYL 3J7Z1 4JAEA 4AR6A 4AR3A 1NXEA 1E8JA 1RWDA 5IY0A 2Y0SP 2MS3A 4JADA 2NVTL 1R0GA 4U671 3H9CA 4E6YA 1LKMA 5M5YL 2JI3A 1SMUA 2PMZP 1NXGA 3S1ML 3HOYL 3HJWB 3RZTA 5AI3A 2A68D 2A6ED 3MQKB 4BY1L 1B2OA 2VUML 2XJRA 4YWLA 3RZDL 4AHZA 3S1RL 1VZHA 3S16L 1BFYA 1R0HA 4XGHA 3QVDA 1YK4A 2APOB 2EY4E 3S2DL 3WWNB 3NFPI 2J9UB 4AR4A 1RDGA 2A6HD 2ZIXA 4A3DL 3QQCE 3GTLL 3HOZL 3LWRB 2PPTA 2ERSA 3P2AA 4A3KL 2BE5D 1I3QL 3GTKL 1RYQA 1TWCL 4AHXA 3LWOB 3LWVB 3PIP1 4A3IL 3PKIA 4A3JL 1YUZA 5GAGc 3LNLA 4YWMA 5C4XL 5M5XL 2A69D 2DSXA 1JYBA 3FDJA 3GTPL 2CR8A 3S14L 1S2ZA 3I4NL 1LTLA 4A3GL 2RFKB 1R0FA 5AN9H 1ODHA 3GTOL 5IYDL 4JAGA 4C3JL 5C4JL 2B5ID 3RZ6A 1PZXA 3P8BA 1Y1VL 3PO3L 2AUSB 4G6BA 1PFVA 1WCML 2JI1A 3KYVA 4RXNA 3HJYB 3HKZP 1BQ8A 2R92L 4ZN1B 4ZN3B 1IROA 2CKCA 6RXNA 3IU3I 1QYBA 1I50L 2JA6L 2R93L 3LWQB 4AI2A 2GMGA 1CAAA 4AHWA 1Y1WL 3WWLA 1CADA 4V196 2XJVA 4WFN1 3I4ML 5C3EL 3H0GL 5MF6A 2XJPA 4A3FL 1T9PA 1TWAL 3HOWL 2HVYC 7RXNA 3RZOL 2C6BA 4AI0A 1TWFL 4C3IL 3RYGA 3ZG6A 4A3BL 4AI1A 2V0EA 1FHHA 2KKDA 2KN9A 5FJ8L 1S24A 2V0FA 2PYAA 3HOXL 4A3ML 2JI2A 5DM61 4K9FA 1IW7D 3A44A 5JVH1 1LKPA 1RYTA 2E2IL 1YUXA 4BBSL 1RDVA 4BXXL 1NNQA 5GAEc 4Y52L 2C6AA 1OWBA 2AQCA 2XJUA 4LHNA 1B2JA 3KYXA 2WB1P 3HAXC 4TVMA 2NYDA 1DVBA 2LCQA 3KYWA 3B0AB 4X6AL 5MGNA 3S1NL 1IRNA 4C2M1 3CQZL 5MFPA 2HR5A 1OWCA 5GADc 1DX8A 2XJTA 4UY81 2CKAA 1Z92B 3GTML 3KYUA 4AI3A 3GTGL 3PZAA 2JA8L 5GAHc 1QCVA 5IYCL 2L0ZA 2M4YA 4A3CL 1ZRPA 2E2HL 4JAFA 5AI2A 1BE7A 4ME3A 3H99A 3H97A 1K83L 1H7VA 1BQ9A 1WJVA 4BBRL 3LPEB 1IU5A 1QQTA 2K2DA 3S1QL 1YK5A 3K7AL 2XJSA 2M6PA 5K2ME 2PSMC 2QL0A 3MSUA 1SMWA 2M6OA 3HOUL 3H9BA 5IP7L 3PIO1 4C3HL 2ERJA 3H3VM 1PFUA 1R9TL 2O5JD 3M3YL 1I6HL 5M3ML 3PKJA 3GTQL 5H1Sc 4QIWP 5JVG1 1VCXA 1IU6A 5M3FL 1F4LA 3PO2L 4A93L 1YV1A 4A3LL 1VZGA 4BY7L 1SMMA 2E2JL 4AYBP 3S2HL 3MPSA 2JA7L 3KYYA 1PFYA 4AHYA 4LHLA 2PVXA 2R7ZL
chains in the Genus database with same CATH topology
3HKZP 3S1ML 3HOYL 2R92L 1SFOL 4BY1L 2VUML 1TWGL 3GTML 1I50L 3GTGL 2JA6L 2R93L 3HOVL 2B63L 4A3EL 2JA8L 3RZDL 5IYCL 3S1RL 1Y1WL 4A3CL 2YU9L 3S16L 3GTJL 3S15L 2E2HL 3I4ML 5C3EL 3H0GL 5C44L 1K83L 4A3FL 3S2DL 3M4OL 4BBRL 1TWAL 3HOWL 4A3DL 3RZOL 3GTLL 3S1QL 2WAQP 3HOZL 1TWFL 4C3IL 3K7AL 4A3KL 1I3QL 4A3BL 3GTKL 5FJ8L 1TWCL 3HOXL 4A3ML 2JA5L 3HOUL 5M5WL 1TWHL 5IP7L 5IP9L 4C3HL 4A3IL 2NVXL 3H3VM 4BBSL 2E2IL 4A3JL 1R9TL 4BXXL 2PMZP 5IYBL 4Y52L 3M3YL 5M5XL 5C4XL 1I6HL 5M3ML 3S17L 5FLML 2NVQL 3GTPL 3S14L 3GTQL 3I4NL 2WB1P 4A3GL 4Y7NL 4QIWP 3GTOL 5M3FL 5IYDL 3FKIL 3PO2L 4C3JL 5C4JL 4A93L 2NVYL 4A3LL 4BY7L 3PO3L 1Y1VL 2E2JL 4AYBP 4X6AL 2Y0SP 1WCML 3S2HL 3S1NL 2NVTL 2JA7L 4C2M1 3CQZL 5M5YL 2R7ZL
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3HKZ P;  3S1M L;  3HOY L;  2R92 L;  1SFO L;  4BY1 L;  2VUM L;  1TWG L;  3GTM L;  1I50 L;  3GTG L;  2JA6 L;  2R93 L;  3HOV L;  2B63 L;  4A3E L;  2JA8 L;  3RZD L;  5IYC L;  3S1R L;  1Y1W L;  4A3C L;  2YU9 L;  3S16 L;  3GTJ L;  3S15 L;  2E2H L;  3I4M L;  5C3E L;  3H0G L;  5C44 L;  1K83 L;  4A3F L;  3S2D L;  3M4O L;  4BBR L;  1TWA L;  3HOW L;  4A3D L;  3RZO L;  3GTL L;  3S1Q L;  2WAQ P;  3HOZ L;  1TWF L;  4C3I L;  3K7A L;  4A3K L;  1I3Q L;  4A3B L;  3GTK L;  5FJ8 L;  1TWC L;  3HOX L;  4A3M L;  2JA5 L;  3HOU L;  5M5W L;  1TWH L;  5IP7 L;  5IP9 L;  4C3H L;  4A3I L;  2NVX L;  3H3V M;  4BBS L;  2E2I L;  4A3J L;  1R9T L;  4BXX L;  2PMZ P;  5IYB L;  4Y52 L;  3M3Y L;  5M5X L;  5C4X L;  1I6H L;  5M3M L;  3S17 L;  5FLM L;  2NVQ L;  3GTP L;  3S14 L;  3GTQ L;  3I4N L;  2WB1 P;  4A3G L;  4Y7N L;  4QIW P;  3GTO L;  5M3F L;  5IYD L;  3FKI L;  3PO2 L;  4C3J L;  5C4J L;  4A93 L;  2NVY L;  4A3L L;  4BY7 L;  3PO3 L;  1Y1V L;  2E2J L;  4AYB P;  4X6A L;  2Y0S P;  1WCM L;  3S2H L;  3S1N L;  2NVT L;  2JA7 L;  4C2M 1;  3CQZ L;  5M5Y L;  2R7Z L; 
#chains in the Genus database with same CATH topology
 1SFO L;  2M4V A;  1C09 A;  1RB9 A;  1TWG L;  4TPU A;  1S30 A;  1R0J A;  3HOV L;  3VPB E;  2B63 L;  4A3E L;  5DM7 1;  5MLC 3;  3SS2 A;  2YU9 L;  3GTJ L;  1T9Q A;  3S15 L;  2AYJ A;  2V3B B;  1BRF A;  5C44 L;  2PVE A;  3M4O L;  2XJQ A;  5EIO C;  4POF A;  2WAQ P;  4B8C D;  5RXN A;  1PFW A;  1B71 A;  2JA5 L;  3K35 A;  5M5W L;  1TWH L;  5IP9 L;  2NVX L;  1T9O A;  1P7P A;  3B08 B;  4AR5 A;  5MFZ A;  2Z3R B;  5IYB L;  3JR7 A;  3PWF A;  5EIN C;  4XXB B;  2H12 A;  2Z3Q B;  3S17 L;  5FLM L;  4POG A;  2RDV A;  3LWP B;  2NVQ L;  1R0I A;  2VL6 A;  1B13 A;  3J7Y 1;  1VZI A;  8RXN A;  4Y7N L;  3PL5 A;  4GS7 D;  1LKO A;  3FKI L;  1FHM A;  2NVY L;  3J7Z 1;  4JAE A;  4AR6 A;  4AR3 A;  1NXE A;  1E8J A;  1RWD A;  5IY0 A;  2Y0S P;  2MS3 A;  4JAD A;  2NVT L;  1R0G A;  4U67 1;  3H9C A;  4E6Y A;  1LKM A;  5M5Y L;  2JI3 A;  1SMU A;  2PMZ P;  1NXG A;  3S1M L;  3HOY L;  3HJW B;  3RZT A;  5AI3 A;  2A68 D;  2A6E D;  3MQK B;  4BY1 L;  1B2O A;  2VUM L;  2XJR A;  4YWL A;  3RZD L;  4AHZ A;  3S1R L;  1VZH A;  3S16 L;  1BFY A;  1R0H A;  4XGH A;  3QVD A;  1YK4 A;  2APO B;  2EY4 E;  3S2D L;  3WWN B;  3NFP I;  2J9U B;  4AR4 A;  1RDG A;  2A6H D;  2ZIX A;  4A3D L;  3QQC E;  3GTL L;  3HOZ L;  3LWR B;  2PPT A;  2ERS A;  3P2A A;  4A3K L;  2BE5 D;  1I3Q L;  3GTK L;  1RYQ A;  1TWC L;  4AHX A;  3LWO B;  3LWV B;  3PIP 1;  4A3I L;  3PKI A;  4A3J L;  1YUZ A;  5GAG c;  3LNL A;  4YWM A;  5C4X L;  5M5X L;  2A69 D;  2DSX A;  1JYB A;  3FDJ A;  3GTP L;  2CR8 A;  3S14 L;  1S2Z A;  3I4N L;  1LTL A;  4A3G L;  2RFK B;  1R0F A;  5AN9 H;  1ODH A;  3GTO L;  5IYD L;  4JAG A;  4C3J L;  5C4J L;  2B5I D;  3RZ6 A;  1PZX A;  3P8B A;  1Y1V L;  3PO3 L;  2AUS B;  4G6B A;  1PFV A;  1WCM L;  2JI1 A;  3KYV A;  4RXN A;  3HJY B;  3HKZ P;  1BQ8 A;  2R92 L;  4ZN1 B;  4ZN3 B;  1IRO A;  2CKC A;  6RXN A;  3IU3 I;  1QYB A;  1I50 L;  2JA6 L;  2R93 L;  3LWQ B;  4AI2 A;  2GMG A;  1CAA A;  4AHW A;  1Y1W L;  3WWL A;  1CAD A;  4V19 6;  2XJV A;  4WFN 1;  3I4M L;  5C3E L;  3H0G L;  5MF6 A;  2XJP A;  4A3F L;  1T9P A;  1TWA L;  3HOW L;  2HVY C;  7RXN A;  3RZO L;  2C6B A;  4AI0 A;  1TWF L;  4C3I L;  3RYG A;  3ZG6 A;  4A3B L;  4AI1 A;  2V0E A;  1FHH A;  2KKD A;  2KN9 A;  5FJ8 L;  1S24 A;  2V0F A;  2PYA A;  3HOX L;  4A3M L;  2JI2 A;  5DM6 1;  4K9F A;  1IW7 D;  3A44 A;  5JVH 1;  1LKP A;  1RYT A;  2E2I L;  1YUX A;  4BBS L;  1RDV A;  4BXX L;  1NNQ A;  5GAE c;  4Y52 L;  2C6A A;  1OWB A;  2AQC A;  2XJU A;  4LHN A;  1B2J A;  3KYX A;  2WB1 P;  3HAX C;  4TVM A;  2NYD A;  1DVB A;  2LCQ A;  3KYW A;  3B0A B;  4X6A L;  5MGN A;  3S1N L;  1IRN A;  4C2M 1;  3CQZ L;  5MFP A;  2HR5 A;  1OWC A;  5GAD c;  1DX8 A;  2XJT A;  4UY8 1;  2CKA A;  1Z92 B;  3GTM L;  3KYU A;  4AI3 A;  3GTG L;  3PZA A;  2JA8 L;  5GAH c;  1QCV A;  5IYC L;  2L0Z A;  2M4Y A;  4A3C L;  1ZRP A;  2E2H L;  4JAF A;  5AI2 A;  1BE7 A;  4ME3 A;  3H99 A;  3H97 A;  1K83 L;  1H7V A;  1BQ9 A;  1WJV A;  4BBR L;  3LPE B;  1IU5 A;  1QQT A;  2K2D A;  3S1Q L;  1YK5 A;  3K7A L;  2XJS A;  2M6P A;  5K2M E;  2PSM C;  2QL0 A;  3MSU A;  1SMW A;  2M6O A;  3HOU L;  3H9B A;  5IP7 L;  3PIO 1;  4C3H L;  2ERJ A;  3H3V M;  1PFU A;  1R9T L;  2O5J D;  3M3Y L;  1I6H L;  5M3M L;  3PKJ A;  3GTQ L;  5H1S c;  4QIW P;  5JVG 1;  1VCX A;  1IU6 A;  5M3F L;  1F4L A;  3PO2 L;  4A93 L;  1YV1 A;  4A3L L;  1VZG A;  4BY7 L;  1SMM A;  2E2J L;  4AYB P;  3S2H L;  3MPS A;  2JA7 L;  3KYY A;  1PFY A;  4AHY A;  4LHL A;  2PVX A;  2R7Z L; 
#chains in the Genus database with same CATH homology
 3HKZ P;  3S1M L;  3HOY L;  2R92 L;  1SFO L;  4BY1 L;  2VUM L;  1TWG L;  3GTM L;  1I50 L;  3GTG L;  2JA6 L;  2R93 L;  3HOV L;  2B63 L;  4A3E L;  2JA8 L;  3RZD L;  5IYC L;  3S1R L;  1Y1W L;  4A3C L;  2YU9 L;  3S16 L;  3GTJ L;  3S15 L;  2E2H L;  3I4M L;  5C3E L;  3H0G L;  5C44 L;  1K83 L;  4A3F L;  3S2D L;  3M4O L;  4BBR L;  1TWA L;  3HOW L;  4A3D L;  3RZO L;  3GTL L;  3S1Q L;  2WAQ P;  3HOZ L;  1TWF L;  4C3I L;  3K7A L;  4A3K L;  1I3Q L;  4A3B L;  3GTK L;  5FJ8 L;  1TWC L;  3HOX L;  4A3M L;  2JA5 L;  3HOU L;  5M5W L;  1TWH L;  5IP7 L;  5IP9 L;  4C3H L;  4A3I L;  2NVX L;  3H3V M;  4BBS L;  2E2I L;  4A3J L;  1R9T L;  4BXX L;  2PMZ P;  5IYB L;  4Y52 L;  3M3Y L;  5M5X L;  5C4X L;  1I6H L;  5M3M L;  3S17 L;  5FLM L;  2NVQ L;  3GTP L;  3S14 L;  3GTQ L;  3I4N L;  2WB1 P;  4A3G L;  4Y7N L;  4QIW P;  3GTO L;  5M3F L;  5IYD L;  3FKI L;  3PO2 L;  4C3J L;  5C4J L;  4A93 L;  2NVY L;  4A3L L;  4BY7 L;  3PO3 L;  1Y1V L;  2E2J L;  4AYB P;  4X6A L;  2Y0S P;  1WCM L;  3S2H L;  3S1N L;  2NVT L;  2JA7 L;  4C2M 1;  3CQZ L;  5M5Y L;  2R7Z L; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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