2NVYL

Rna polymerase ii form ii in 150 mm mn+2
Total Genus 1
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
1
sequence length
46
structure length
46
Chain Sequence
b'ATLKYICAECSSKLSLSRTDAVRCKDCGHRILLKARTKRLVQFEAR'
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule keywords DNA-directed RNA polymerase II largest subunit
publication title Structural basis of transcription: role of the trigger loop in substrate specificity and catalysis
pubmed doi rcsb
molecule tags Transcription
total genus 1
structure length 46
sequence length 46
ec nomenclature
pdb deposition date 2006-11-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
L PF03604 DNA_RNApol_7kD DNA directed RNA polymerase, 7 kDa subunit
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.20.28.30 Mainly Beta Single Sheet Rubrerythrin, domain 2 RNA polymerase ii, chain L 2nvyL00
2R93L 1K83L 3K7AL 4A3BL 4A3FL 2JA8L 5C44L 3S14L 2PMZP 4A3IL 2JA6L 3HOXL 4A3ML 2YU9L 3RZDL 3HOWL 4Y52L 3GTPL 4A3EL 3S17L 3S2DL 3S16L 4A3CL 2WB1P 4A3KL 2NVQL 5IYCL 4X6AL 1I6HL 2WAQP 3M4OL 2R7ZL 3S1ML 3CQZL 5M5XL 3HOZL 5IYBL 3FKIL 5IP7L 5C3EL 4A3JL 4A3LL 3I4ML 1I3QL 3RZOL 5IYDL 4A93L 1Y1WL 1I50L 3S15L 1TWGL 3S1QL 3S1RL 3PO2L 3HOYL 4A3DL 2JA7L 4C3JL 4A3GL 4BBSL 4BY7L 5M5WL 3GTJL 1TWHL 3M3YL 2E2JL 5M5YL 3GTML 3I4NL 2VUML 3H3VM 1R9TL 4BXXL 2NVTL 1WCML 2B63L 3HOUL 2NVYL 3GTLL 3GTGL 3PO3L 4QIWP 3HKZP 3GTKL 2E2HL 1TWAL 1TWFL 2JA5L 5IP9L 5M3FL 5M3ML 5C4JL 3S2HL 4Y7NL 2Y0SP 1Y1VL 3HOVL 4C2M1 4C3IL 3S1NL 3GTOL 5FJ8L 3GTQL 1SFOL 4AYBP 4C3HL 2E2IL 3H0GL 4BBRL 1TWCL 2NVXL 2R92L 5C4XL 4BY1L 5FLML
chains in the Genus database with same CATH superfamily
3LWPB 1K83L 3B0AB 4AR5A 4A3IL 1SMMA 2CR8A 3JR7A 3HOXL 2V0EA 3KYVA 4UY81 1FHHA 3MSUA 3S17L 4B8CD 1I6HL 2R7ZL 2JI3A 3WWLA 2BE5D 3MPSA 3ZG6A 1QCVA 4JAFA 2XJSA 1RWDA 2APOB 2C6AA 3RYGA 4AHWA 1R0JA 1PZXA 3KYWA 1BQ9A 1Y1WL 1TWGL 3HJYB 3S1RL 3HOYL 1IW7D 3QQCE 1SMUA 2JI1A 2AUSB 4A3DL 2CKCA 3PL5A 1VZHA 4AHYA 5GAEc 4BY7L 4A3GL 4U671 2M6OA 3M3YL 2M4YA 1PFVA 1H7VA 4AI2A 3LWVB 2AQCA 3FDJA 2NVYL 3PO3L 4QIWP 1E8JA 1TWFL 2PVEA 4AHZA 1FHMA 5C4JL 3S2HL 4Y7NL 2A69D 2Y0SP 3HOVL 5AI2A 3S1NL 2Z3QB 2PVXA 2EY4E 3GTQL 4AYBP 1BE7A 2PPTA 3P2AA 2O5JD 1RYTA 5C4XL 1PFUA 2XJQA 4A3BL 4A3FL 2JA8L 4TPUA 3KYYA 2M4VA 4A3ML 2YU9L 3RZDL 3GTPL 1JYBA 4A3CL 3H9BA 4A3KL 3J7Z1 5H1Sc 5IY0A 2WAQP 1OWBA 3M4OL 3S1ML 1LKOA 5JVG1 5JVH1 5MLC3 2H12A 3KYUA 4A3JL 4A3LL 7RXNA 1RDGA 4LHNA 1LKPA 1NXEA 2LCQA 4K9FA 1I50L 3S15L 2XJVA 5EINC 3S1QL 2RFKB 3PO2L 1R0IA 4XXBB 2HVYC 5M5WL 3H9CA 2E2JL 3GTML 4JAGA 3I4NL 1LKMA 4YWMA 2J9UB 5AI3A 1YK5A 2NVTL 1WCML 3LWRB 4G6BA 4JADA 4LHLA 2KN9A 4AI3A 3GTLL 3HKZP 1C09A 3LPEB 3WWNB 3LNLA 1RB9A 4AR3A 4XGHA 1LTLA 2XJPA 1SMWA 4C2M1 4JAEA 2AYJA 5FJ8L 3PKJA 1SFOL 1OWCA 3H0GL 4ZN3B 3B08B 4WFN1 3KYXA 5FLML 1RYQA 5C44L 1VZGA 1ZRPA 4YWLA 3HOWL 1Z92B 4Y52L 4TVMA 3MQKB 4A3EL 1S24A 2L0ZA 4POGA 5IYCL 5M5XL 3HOZL 5IYBL 1YK4A 1IU6A 3PWFA 3FKIL 3K35A 5MFPA 1R0GA 4AR6A 5C3EL 2ERSA 1B2JA 2PYAA 1DX8A 1R0FA 2A68D 3IU3I 4AR4A 3RZOL 5IYDL 2XJTA 3J7Y1 1QQTA 4AHXA 3P8BA 3HJWB 1YUXA 1S2ZA 2HR5A 2JA7L 4C3JL 3GTJL 1TWHL 1QYBA 5M5YL 2V0FA 2VUML 1BRFA 2ZIXA 3H3VM 1B2OA 4BXXL 3HOUL 2A6ED 2ERJA 2KKDA 1PFYA 4ZN1B 3LWOB 2JI2A 2V3BB 1R0HA 1T9QA 1CAAA 1VZIA 5M3ML 1NNQA 1S30A 1YUZA 5GADc 4POFA 1IU5A 1WJVA 3SS2A 3GTOL 5RXNA 1RDVA 3VPBE 3HAXC 5MFZA 2K2DA 4BBRL 2PSMC 1TWCL 2NVXL 2R92L 2Z3RB 3RZTA 1Y1VL 4RXNA 2R93L 3PKIA 1B71A 3K7AL 3S14L 2PMZP 4ME3A 1BQ8A 2JA6L 1IRNA 1BFYA 1IROA 2A6HD 5DM61 2VL6A 3S2DL 3S16L 1DVBA 2WB1P 1CADA 3H97A 3H99A 2NVQL 3NFPI 5MGNA 4X6AL 3LWQB 3CQZL 5K2ME 3QVDA 1NXGA 1VCXA 5IP7L 3I4ML 1I3QL 2CKAA 5MF6A 4A93L 1F4LA 4E6YA 3A44A 2B5ID 4BBSL 1ODHA 1B13A 1R9TL 2DSXA 3PIO1 1P7PA 2XJUA 3RZ6A 2B63L 2MS3A 1T9PA 2QL0A 8RXNA 3GTGL 3GTKL 2E2HL 1TWAL 2JA5L 4AI1A 4V196 5IP9L 4GS7D 5GAHc 5M3FL 4AI0A 5AN9H 5GAGc 5EIOC 2C6BA 4C3IL 2GMGA 3PIP1 5DM71 2NYDA 1T9OA 6RXNA 4C3HL 2XJRA 1YV1A 2M6PA 1PFWA 2E2IL 3PZAA 4BY1L 2RDVA
chains in the Genus database with same CATH topology
2R93L 1K83L 3K7AL 4A3BL 4A3FL 2JA8L 5C44L 3S14L 2PMZP 4A3IL 2JA6L 3HOXL 4A3ML 2YU9L 3RZDL 3HOWL 4Y52L 3GTPL 4A3EL 3S17L 3S2DL 3S16L 4A3CL 2WB1P 4A3KL 2NVQL 5IYCL 4X6AL 1I6HL 2WAQP 3M4OL 2R7ZL 3S1ML 3CQZL 5M5XL 3HOZL 5IYBL 3FKIL 5IP7L 5C3EL 4A3JL 4A3LL 3I4ML 1I3QL 3RZOL 5IYDL 4A93L 1Y1WL 1I50L 3S15L 1TWGL 3S1QL 3S1RL 3PO2L 3HOYL 4A3DL 2JA7L 4C3JL 4A3GL 4BBSL 4BY7L 5M5WL 3GTJL 1TWHL 3M3YL 2E2JL 5M5YL 3GTML 3I4NL 2VUML 3H3VM 1R9TL 4BXXL 2NVTL 1WCML 2B63L 3HOUL 2NVYL 3GTLL 3GTGL 3PO3L 4QIWP 3HKZP 3GTKL 2E2HL 1TWAL 1TWFL 2JA5L 5IP9L 5M3FL 5M3ML 5C4JL 3S2HL 4Y7NL 2Y0SP 1Y1VL 3HOVL 4C2M1 4C3IL 3S1NL 3GTOL 5FJ8L 3GTQL 1SFOL 4AYBP 4C3HL 2E2IL 3H0GL 4BBRL 1TWCL 2NVXL 2R92L 5C4XL 4BY1L 5FLML
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2R93 L;  1K83 L;  3K7A L;  4A3B L;  4A3F L;  2JA8 L;  5C44 L;  3S14 L;  2PMZ P;  4A3I L;  2JA6 L;  3HOX L;  4A3M L;  2YU9 L;  3RZD L;  3HOW L;  4Y52 L;  3GTP L;  4A3E L;  3S17 L;  3S2D L;  3S16 L;  4A3C L;  2WB1 P;  4A3K L;  2NVQ L;  5IYC L;  4X6A L;  1I6H L;  2WAQ P;  3M4O L;  2R7Z L;  3S1M L;  3CQZ L;  5M5X L;  3HOZ L;  5IYB L;  3FKI L;  5IP7 L;  5C3E L;  4A3J L;  4A3L L;  3I4M L;  1I3Q L;  3RZO L;  5IYD L;  4A93 L;  1Y1W L;  1I50 L;  3S15 L;  1TWG L;  3S1Q L;  3S1R L;  3PO2 L;  3HOY L;  4A3D L;  2JA7 L;  4C3J L;  4A3G L;  4BBS L;  4BY7 L;  5M5W L;  3GTJ L;  1TWH L;  3M3Y L;  2E2J L;  5M5Y L;  3GTM L;  3I4N L;  2VUM L;  3H3V M;  1R9T L;  4BXX L;  2NVT L;  1WCM L;  2B63 L;  3HOU L;  2NVY L;  3GTL L;  3GTG L;  3PO3 L;  4QIW P;  3HKZ P;  3GTK L;  2E2H L;  1TWA L;  1TWF L;  2JA5 L;  5IP9 L;  5M3F L;  5M3M L;  5C4J L;  3S2H L;  4Y7N L;  2Y0S P;  1Y1V L;  3HOV L;  4C2M 1;  4C3I L;  3S1N L;  3GTO L;  5FJ8 L;  3GTQ L;  1SFO L;  4AYB P;  4C3H L;  2E2I L;  3H0G L;  4BBR L;  1TWC L;  2NVX L;  2R92 L;  5C4X L;  4BY1 L;  5FLM L; 
#chains in the Genus database with same CATH topology
 3LWP B;  1K83 L;  3B0A B;  4AR5 A;  4A3I L;  1SMM A;  2CR8 A;  3JR7 A;  3HOX L;  2V0E A;  3KYV A;  4UY8 1;  1FHH A;  3MSU A;  3S17 L;  4B8C D;  1I6H L;  2R7Z L;  2JI3 A;  3WWL A;  2BE5 D;  3MPS A;  3ZG6 A;  1QCV A;  4JAF A;  2XJS A;  1RWD A;  2APO B;  2C6A A;  3RYG A;  4AHW A;  1R0J A;  1PZX A;  3KYW A;  1BQ9 A;  1Y1W L;  1TWG L;  3HJY B;  3S1R L;  3HOY L;  1IW7 D;  3QQC E;  1SMU A;  2JI1 A;  2AUS B;  4A3D L;  2CKC A;  3PL5 A;  1VZH A;  4AHY A;  5GAE c;  4BY7 L;  4A3G L;  4U67 1;  2M6O A;  3M3Y L;  2M4Y A;  1PFV A;  1H7V A;  4AI2 A;  3LWV B;  2AQC A;  3FDJ A;  2NVY L;  3PO3 L;  4QIW P;  1E8J A;  1TWF L;  2PVE A;  4AHZ A;  1FHM A;  5C4J L;  3S2H L;  4Y7N L;  2A69 D;  2Y0S P;  3HOV L;  5AI2 A;  3S1N L;  2Z3Q B;  2PVX A;  2EY4 E;  3GTQ L;  4AYB P;  1BE7 A;  2PPT A;  3P2A A;  2O5J D;  1RYT A;  5C4X L;  1PFU A;  2XJQ A;  4A3B L;  4A3F L;  2JA8 L;  4TPU A;  3KYY A;  2M4V A;  4A3M L;  2YU9 L;  3RZD L;  3GTP L;  1JYB A;  4A3C L;  3H9B A;  4A3K L;  3J7Z 1;  5H1S c;  5IY0 A;  2WAQ P;  1OWB A;  3M4O L;  3S1M L;  1LKO A;  5JVG 1;  5JVH 1;  5MLC 3;  2H12 A;  3KYU A;  4A3J L;  4A3L L;  7RXN A;  1RDG A;  4LHN A;  1LKP A;  1NXE A;  2LCQ A;  4K9F A;  1I50 L;  3S15 L;  2XJV A;  5EIN C;  3S1Q L;  2RFK B;  3PO2 L;  1R0I A;  4XXB B;  2HVY C;  5M5W L;  3H9C A;  2E2J L;  3GTM L;  4JAG A;  3I4N L;  1LKM A;  4YWM A;  2J9U B;  5AI3 A;  1YK5 A;  2NVT L;  1WCM L;  3LWR B;  4G6B A;  4JAD A;  4LHL A;  2KN9 A;  4AI3 A;  3GTL L;  3HKZ P;  1C09 A;  3LPE B;  3WWN B;  3LNL A;  1RB9 A;  4AR3 A;  4XGH A;  1LTL A;  2XJP A;  1SMW A;  4C2M 1;  4JAE A;  2AYJ A;  5FJ8 L;  3PKJ A;  1SFO L;  1OWC A;  3H0G L;  4ZN3 B;  3B08 B;  4WFN 1;  3KYX A;  5FLM L;  1RYQ A;  5C44 L;  1VZG A;  1ZRP A;  4YWL A;  3HOW L;  1Z92 B;  4Y52 L;  4TVM A;  3MQK B;  4A3E L;  1S24 A;  2L0Z A;  4POG A;  5IYC L;  5M5X L;  3HOZ L;  5IYB L;  1YK4 A;  1IU6 A;  3PWF A;  3FKI L;  3K35 A;  5MFP A;  1R0G A;  4AR6 A;  5C3E L;  2ERS A;  1B2J A;  2PYA A;  1DX8 A;  1R0F A;  2A68 D;  3IU3 I;  4AR4 A;  3RZO L;  5IYD L;  2XJT A;  3J7Y 1;  1QQT A;  4AHX A;  3P8B A;  3HJW B;  1YUX A;  1S2Z A;  2HR5 A;  2JA7 L;  4C3J L;  3GTJ L;  1TWH L;  1QYB A;  5M5Y L;  2V0F A;  2VUM L;  1BRF A;  2ZIX A;  3H3V M;  1B2O A;  4BXX L;  3HOU L;  2A6E D;  2ERJ A;  2KKD A;  1PFY A;  4ZN1 B;  3LWO B;  2JI2 A;  2V3B B;  1R0H A;  1T9Q A;  1CAA A;  1VZI A;  5M3M L;  1NNQ A;  1S30 A;  1YUZ A;  5GAD c;  4POF A;  1IU5 A;  1WJV A;  3SS2 A;  3GTO L;  5RXN A;  1RDV A;  3VPB E;  3HAX C;  5MFZ A;  2K2D A;  4BBR L;  2PSM C;  1TWC L;  2NVX L;  2R92 L;  2Z3R B;  3RZT A;  1Y1V L;  4RXN A;  2R93 L;  3PKI A;  1B71 A;  3K7A L;  3S14 L;  2PMZ P;  4ME3 A;  1BQ8 A;  2JA6 L;  1IRN A;  1BFY A;  1IRO A;  2A6H D;  5DM6 1;  2VL6 A;  3S2D L;  3S16 L;  1DVB A;  2WB1 P;  1CAD A;  3H97 A;  3H99 A;  2NVQ L;  3NFP I;  5MGN A;  4X6A L;  3LWQ B;  3CQZ L;  5K2M E;  3QVD A;  1NXG A;  1VCX A;  5IP7 L;  3I4M L;  1I3Q L;  2CKA A;  5MF6 A;  4A93 L;  1F4L A;  4E6Y A;  3A44 A;  2B5I D;  4BBS L;  1ODH A;  1B13 A;  1R9T L;  2DSX A;  3PIO 1;  1P7P A;  2XJU A;  3RZ6 A;  2B63 L;  2MS3 A;  1T9P A;  2QL0 A;  8RXN A;  3GTG L;  3GTK L;  2E2H L;  1TWA L;  2JA5 L;  4AI1 A;  4V19 6;  5IP9 L;  4GS7 D;  5GAH c;  5M3F L;  4AI0 A;  5AN9 H;  5GAG c;  5EIO C;  2C6B A;  4C3I L;  2GMG A;  3PIP 1;  5DM7 1;  2NYD A;  1T9O A;  6RXN A;  4C3H L;  2XJR A;  1YV1 A;  2M6P A;  1PFW A;  2E2I L;  3PZA A;  4BY1 L;  2RDV A; 
#chains in the Genus database with same CATH homology
 2R93 L;  1K83 L;  3K7A L;  4A3B L;  4A3F L;  2JA8 L;  5C44 L;  3S14 L;  2PMZ P;  4A3I L;  2JA6 L;  3HOX L;  4A3M L;  2YU9 L;  3RZD L;  3HOW L;  4Y52 L;  3GTP L;  4A3E L;  3S17 L;  3S2D L;  3S16 L;  4A3C L;  2WB1 P;  4A3K L;  2NVQ L;  5IYC L;  4X6A L;  1I6H L;  2WAQ P;  3M4O L;  2R7Z L;  3S1M L;  3CQZ L;  5M5X L;  3HOZ L;  5IYB L;  3FKI L;  5IP7 L;  5C3E L;  4A3J L;  4A3L L;  3I4M L;  1I3Q L;  3RZO L;  5IYD L;  4A93 L;  1Y1W L;  1I50 L;  3S15 L;  1TWG L;  3S1Q L;  3S1R L;  3PO2 L;  3HOY L;  4A3D L;  2JA7 L;  4C3J L;  4A3G L;  4BBS L;  4BY7 L;  5M5W L;  3GTJ L;  1TWH L;  3M3Y L;  2E2J L;  5M5Y L;  3GTM L;  3I4N L;  2VUM L;  3H3V M;  1R9T L;  4BXX L;  2NVT L;  1WCM L;  2B63 L;  3HOU L;  2NVY L;  3GTL L;  3GTG L;  3PO3 L;  4QIW P;  3HKZ P;  3GTK L;  2E2H L;  1TWA L;  1TWF L;  2JA5 L;  5IP9 L;  5M3F L;  5M3M L;  5C4J L;  3S2H L;  4Y7N L;  2Y0S P;  1Y1V L;  3HOV L;  4C2M 1;  4C3I L;  3S1N L;  3GTO L;  5FJ8 L;  3GTQ L;  1SFO L;  4AYB P;  4C3H L;  2E2I L;  3H0G L;  4BBR L;  1TWC L;  2NVX L;  2R92 L;  5C4X L;  4BY1 L;  5FLM L; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...