2NVTL

Rna polymerase ii elongation complex in 150 mm mg+2 with gmpcpp
Total Genus 1
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
1
sequence length
46
structure length
46
Chain Sequence
ATLKYICAECSSKLSLSRTDAVRCKDCGHRILLKARTKRLVQFEAR
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule keywords 5'-R(*AP*AP*GP*AP*CP*CP*AP*GP*GP*C)-3'
publication title Structural basis of transcription: role of the trigger loop in substrate specificity and catalysis
pubmed doi rcsb
molecule tags Transcription,transferase/dna-rna hybrid
total genus 1
structure length 46
sequence length 46
ec nomenclature
pdb deposition date 2006-11-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
L PF03604 DNA_RNApol_7kD DNA directed RNA polymerase, 7 kDa subunit
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.20.28.30 Mainly Beta Single Sheet Rubrerythrin, domain 2 RNA polymerase ii, chain L 2nvtL00
4A3BL 2R92L 2NVXL 1K83L 3H3VM 4QIWP 2E2IL 3GTQL 4A3LL 4C2M1 5M5WL 3GTOL 1Y1VL 3M3YL 4AYBP 4BBSL 2YU9L 3H0GL 3S2HL 5IP9L 5M5XL 5FLML 3S15L 2R7ZL 2JA7L 3S1ML 2Y0SP 4A3KL 2WB1P 3S17L 3RZOL 5C4JL 3I4ML 4BXXL 2JA6L 5C3EL 3GTML 1TWAL 1TWCL 3I4NL 1WCML 2JA5L 2R93L 4BY7L 2NVQL 4A3EL 1TWHL 3HOWL 4A93L 3S14L 4A3GL 3RZDL 3GTKL 4X6AL 3HKZP 1TWGL 3FKIL 3GTJL 3HOZL 4C3JL 4A3CL 3HOUL 2NVYL 3S1RL 5IYDL 5IP7L 5C4XL 3M4OL 4A3IL 2JA8L 3K7AL 4Y7NL 5IYBL 1SFOL 3GTLL 1Y1WL 4A3JL 2NVTL 5C44L 3HOXL 5IYCL 1I6HL 3GTGL 3HOYL 3GTPL 1I50L 5M3FL 3S16L 5M3ML 2VUML 3PO3L 3S1QL 1I3QL 4A3ML 4C3IL 4BY1L 2E2JL 3HOVL 3S2DL 5M5YL 4A3FL 2B63L 5FJ8L 3PO2L 2PMZP 2E2HL 3S1NL 3CQZL 4C3HL 4Y52L 4BBRL 2WAQP 1R9TL 1TWFL 4A3DL
chains in the Genus database with same CATH superfamily
3B0AB 2R92L 1BQ9A 4AR3A 5M5WL 3GTOL 1CADA 1Y1VL 4K9FA 4GS7D 3H0GL 3S2HL 3NFPI 5M5XL 5FLML 3S15L 2A68D 4A3KL 2H12A 3P2AA 5AI2A 3MSUA 3J7Z1 2CKCA 2R93L 1PFVA 1WJVA 1R0GA 1DVBA 1TWHL 3HOWL 2XJPA 3PWFA 3B08B 2ZIXA 2Z3RB 2AUSB 3S14L 5GAGc 5JVH1 3LWRB 2Z3QB 3LWVB 3ZG6A 2XJVA 1LKOA 3H99A 3PZAA 1BE7A 5AN9H 2NVYL 3S1RL 4A3IL 6RXNA 3K7AL 1SFOL 2PPTA 3WWNB 2NVTL 2O5JD 3HOXL 2A6HD 3PL5A 3KYUA 3GTGL 1YK5A 5M3FL 2VUML 5MFZA 2AQCA 2RFKB 5GADc 4YWLA 2B63L 2PMZP 3S1NL 3CQZL 1T9QA 4TPUA 1F4LA 1RB9A 4LHNA 2M6PA 5EINC 2M4VA 4POGA 3PKJA 1RYQA 4A3DL 2J9UB 2JI1A 2V0FA 3LPEB 2BE5D 5MLC3 2NVXL 1T9OA 4QIWP 2E2IL 3P8BA 2LCQA 3GTQL 4A3LL 1SMUA 4BBSL 3VPBE 1FHHA 8RXNA 5IP9L 5C4JL 4BXXL 1PZXA 2JA6L 3GTML 5IY0A 1TWAL 1B2JA 2XJQA 2JA5L 4B8CD 1YK4A 2NVQL 4A3EL 4JADA 3IU3I 2K2DA 2V0EA 3KYWA 2M6OA 2KN9A 3FKIL 3GTJL 3HOZL 2CKAA 5C4XL 1VZGA 3M4OL 2JA8L 3SS2A 4Y7NL 1B2OA 5RXNA 3PKIA 1IRNA 3GTLL 1YV1A 4POFA 5C44L 5IYCL 1QYBA 1VZHA 4AHXA 1YUXA 3GTPL 1I50L 3S16L 2HVYC 1ZRPA 3PO3L 3S1QL 3J7Y1 2V3BB 1FHMA 1R0IA 2E2JL 3KYXA 5M5YL 4WFN1 2XJRA 4A3FL 1BFYA 3MPSA 2E2HL 1Z92B 2WAQP 1TWFL 1IROA 5DM61 2KKDA 1LKMA 1RDGA 3FDJA 4XXBB 1E8JA 1JYBA 1SMWA 3M3YL 1CAAA 5AI3A 4E6YA 2JA7L 4AHZA 5K2ME 5EIOC 2WB1P 3RZOL 3PIO1 1H7VA 2DSXA 4LHLA 3RYGA 1PFYA 3HAXC 1TWCL 3I4NL 1WCML 1S24A 5GAEc 4RXNA 2VL6A 4AR5A 4ME3A 4XGHA 3LWQB 1LKPA 4A3GL 3RZDL 3GTKL 1QCVA 3HKZP 2CR8A 4C3JL 1RWDA 2RDVA 1ODHA 2GMGA 4TVMA 1BQ8A 5IP7L 1B71A 1OWBA 1Y1WL 3H97A 4ZN3B 4JAGA 2PVEA 1I6HL 2XJTA 4AHWA 4V196 2PYAA 3WWLA 3KYVA 4AR6A 1PFWA 4YWMA 1VCXA 4JAFA 2EY4E 3HOVL 3S2DL 5MF6A 2PVXA 1T9PA 5MFPA 3PO2L 3RZTA 1S30A 3QQCE 4C3HL 3JR7A 2L0ZA 1R0HA 1R9TL 2APOB 1VZIA 1YUZA 4A3BL 1S2ZA 2MS3A 3LNLA 2JI2A 3LWOB 1IU6A 1K83L 3H3VM 4C2M1 4JAEA 4AYBP 2PSMC 1IU5A 1P7PA 2XJSA 2YU9L 1C09A 2M4YA 4ZN1B 2R7ZL 3S1ML 2Y0SP 3S17L 3H9BA 3I4ML 5GAHc 2A69D 3RZ6A 1R0FA 5C3EL 4G6BA 2ERSA 4AR4A 1LTLA 2QL0A 4BY7L 1NNQA 4A93L 3KYYA 4AI0A 5H1Sc 1QQTA 2C6AA 1DX8A 4X6AL 3HJYB 4AI1A 4UY81 1TWGL 3QVDA 3HJWB 4A3CL 7RXNA 3HOUL 1PFUA 3MQKB 1RYTA 4AI3A 5IYDL 1NXGA 2C6BA 2HR5A 5IYBL 4A3JL 1NXEA 5MGNA 2ERJA 1SMMA 4AHYA 3HOYL 2B5ID 3PIP1 4U671 5JVG1 5M3ML 3K35A 1OWCA 1RDVA 1I3QL 2A6ED 4A3ML 4AI2A 4C3IL 4BY1L 1BRFA 3LWPB 1B13A 5DM71 2NYDA 3H9CA 2AYJA 5FJ8L 1R0JA 4Y52L 2JI3A 3A44A 2XJUA 4BBRL 1IW7D
chains in the Genus database with same CATH topology
4A3BL 2R92L 2NVXL 1K83L 3H3VM 4QIWP 2E2IL 3GTQL 4A3LL 4C2M1 5M5WL 3GTOL 1Y1VL 3M3YL 4AYBP 4BBSL 2YU9L 3H0GL 3S2HL 5IP9L 5M5XL 5FLML 3S15L 2R7ZL 2JA7L 3S1ML 2Y0SP 4A3KL 2WB1P 3S17L 3RZOL 5C4JL 3I4ML 4BXXL 2JA6L 5C3EL 3GTML 1TWAL 1TWCL 3I4NL 1WCML 2JA5L 2R93L 4BY7L 2NVQL 4A3EL 1TWHL 3HOWL 4A93L 3S14L 4A3GL 3RZDL 3GTKL 4X6AL 3HKZP 1TWGL 3FKIL 3GTJL 3HOZL 4C3JL 4A3CL 3HOUL 2NVYL 3S1RL 5IYDL 5IP7L 5C4XL 3M4OL 4A3IL 2JA8L 3K7AL 4Y7NL 5IYBL 1SFOL 3GTLL 1Y1WL 4A3JL 2NVTL 5C44L 3HOXL 5IYCL 1I6HL 3GTGL 3HOYL 3GTPL 1I50L 5M3FL 3S16L 5M3ML 2VUML 3PO3L 3S1QL 1I3QL 4A3ML 4C3IL 4BY1L 2E2JL 3HOVL 3S2DL 5M5YL 4A3FL 2B63L 5FJ8L 3PO2L 2PMZP 2E2HL 3S1NL 3CQZL 4C3HL 4Y52L 4BBRL 2WAQP 1R9TL 1TWFL 4A3DL
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4A3B L;  2R92 L;  2NVX L;  1K83 L;  3H3V M;  4QIW P;  2E2I L;  3GTQ L;  4A3L L;  4C2M 1;  5M5W L;  3GTO L;  1Y1V L;  3M3Y L;  4AYB P;  4BBS L;  2YU9 L;  3H0G L;  3S2H L;  5IP9 L;  5M5X L;  5FLM L;  3S15 L;  2R7Z L;  2JA7 L;  3S1M L;  2Y0S P;  4A3K L;  2WB1 P;  3S17 L;  3RZO L;  5C4J L;  3I4M L;  4BXX L;  2JA6 L;  5C3E L;  3GTM L;  1TWA L;  1TWC L;  3I4N L;  1WCM L;  2JA5 L;  2R93 L;  4BY7 L;  2NVQ L;  4A3E L;  1TWH L;  3HOW L;  4A93 L;  3S14 L;  4A3G L;  3RZD L;  3GTK L;  4X6A L;  3HKZ P;  1TWG L;  3FKI L;  3GTJ L;  3HOZ L;  4C3J L;  4A3C L;  3HOU L;  2NVY L;  3S1R L;  5IYD L;  5IP7 L;  5C4X L;  3M4O L;  4A3I L;  2JA8 L;  3K7A L;  4Y7N L;  5IYB L;  1SFO L;  3GTL L;  1Y1W L;  4A3J L;  2NVT L;  5C44 L;  3HOX L;  5IYC L;  1I6H L;  3GTG L;  3HOY L;  3GTP L;  1I50 L;  5M3F L;  3S16 L;  5M3M L;  2VUM L;  3PO3 L;  3S1Q L;  1I3Q L;  4A3M L;  4C3I L;  4BY1 L;  2E2J L;  3HOV L;  3S2D L;  5M5Y L;  4A3F L;  2B63 L;  5FJ8 L;  3PO2 L;  2PMZ P;  2E2H L;  3S1N L;  3CQZ L;  4C3H L;  4Y52 L;  4BBR L;  2WAQ P;  1R9T L;  1TWF L;  4A3D L; 
#chains in the Genus database with same CATH topology
 3B0A B;  2R92 L;  1BQ9 A;  4AR3 A;  5M5W L;  3GTO L;  1CAD A;  1Y1V L;  4K9F A;  4GS7 D;  3H0G L;  3S2H L;  3NFP I;  5M5X L;  5FLM L;  3S15 L;  2A68 D;  4A3K L;  2H12 A;  3P2A A;  5AI2 A;  3MSU A;  3J7Z 1;  2CKC A;  2R93 L;  1PFV A;  1WJV A;  1R0G A;  1DVB A;  1TWH L;  3HOW L;  2XJP A;  3PWF A;  3B08 B;  2ZIX A;  2Z3R B;  2AUS B;  3S14 L;  5GAG c;  5JVH 1;  3LWR B;  2Z3Q B;  3LWV B;  3ZG6 A;  2XJV A;  1LKO A;  3H99 A;  3PZA A;  1BE7 A;  5AN9 H;  2NVY L;  3S1R L;  4A3I L;  6RXN A;  3K7A L;  1SFO L;  2PPT A;  3WWN B;  2NVT L;  2O5J D;  3HOX L;  2A6H D;  3PL5 A;  3KYU A;  3GTG L;  1YK5 A;  5M3F L;  2VUM L;  5MFZ A;  2AQC A;  2RFK B;  5GAD c;  4YWL A;  2B63 L;  2PMZ P;  3S1N L;  3CQZ L;  1T9Q A;  4TPU A;  1F4L A;  1RB9 A;  4LHN A;  2M6P A;  5EIN C;  2M4V A;  4POG A;  3PKJ A;  1RYQ A;  4A3D L;  2J9U B;  2JI1 A;  2V0F A;  3LPE B;  2BE5 D;  5MLC 3;  2NVX L;  1T9O A;  4QIW P;  2E2I L;  3P8B A;  2LCQ A;  3GTQ L;  4A3L L;  1SMU A;  4BBS L;  3VPB E;  1FHH A;  8RXN A;  5IP9 L;  5C4J L;  4BXX L;  1PZX A;  2JA6 L;  3GTM L;  5IY0 A;  1TWA L;  1B2J A;  2XJQ A;  2JA5 L;  4B8C D;  1YK4 A;  2NVQ L;  4A3E L;  4JAD A;  3IU3 I;  2K2D A;  2V0E A;  3KYW A;  2M6O A;  2KN9 A;  3FKI L;  3GTJ L;  3HOZ L;  2CKA A;  5C4X L;  1VZG A;  3M4O L;  2JA8 L;  3SS2 A;  4Y7N L;  1B2O A;  5RXN A;  3PKI A;  1IRN A;  3GTL L;  1YV1 A;  4POF A;  5C44 L;  5IYC L;  1QYB A;  1VZH A;  4AHX A;  1YUX A;  3GTP L;  1I50 L;  3S16 L;  2HVY C;  1ZRP A;  3PO3 L;  3S1Q L;  3J7Y 1;  2V3B B;  1FHM A;  1R0I A;  2E2J L;  3KYX A;  5M5Y L;  4WFN 1;  2XJR A;  4A3F L;  1BFY A;  3MPS A;  2E2H L;  1Z92 B;  2WAQ P;  1TWF L;  1IRO A;  5DM6 1;  2KKD A;  1LKM A;  1RDG A;  3FDJ A;  4XXB B;  1E8J A;  1JYB A;  1SMW A;  3M3Y L;  1CAA A;  5AI3 A;  4E6Y A;  2JA7 L;  4AHZ A;  5K2M E;  5EIO C;  2WB1 P;  3RZO L;  3PIO 1;  1H7V A;  2DSX A;  4LHL A;  3RYG A;  1PFY A;  3HAX C;  1TWC L;  3I4N L;  1WCM L;  1S24 A;  5GAE c;  4RXN A;  2VL6 A;  4AR5 A;  4ME3 A;  4XGH A;  3LWQ B;  1LKP A;  4A3G L;  3RZD L;  3GTK L;  1QCV A;  3HKZ P;  2CR8 A;  4C3J L;  1RWD A;  2RDV A;  1ODH A;  2GMG A;  4TVM A;  1BQ8 A;  5IP7 L;  1B71 A;  1OWB A;  1Y1W L;  3H97 A;  4ZN3 B;  4JAG A;  2PVE A;  1I6H L;  2XJT A;  4AHW A;  4V19 6;  2PYA A;  3WWL A;  3KYV A;  4AR6 A;  1PFW A;  4YWM A;  1VCX A;  4JAF A;  2EY4 E;  3HOV L;  3S2D L;  5MF6 A;  2PVX A;  1T9P A;  5MFP A;  3PO2 L;  3RZT A;  1S30 A;  3QQC E;  4C3H L;  3JR7 A;  2L0Z A;  1R0H A;  1R9T L;  2APO B;  1VZI A;  1YUZ A;  4A3B L;  1S2Z A;  2MS3 A;  3LNL A;  2JI2 A;  3LWO B;  1IU6 A;  1K83 L;  3H3V M;  4C2M 1;  4JAE A;  4AYB P;  2PSM C;  1IU5 A;  1P7P A;  2XJS A;  2YU9 L;  1C09 A;  2M4Y A;  4ZN1 B;  2R7Z L;  3S1M L;  2Y0S P;  3S17 L;  3H9B A;  3I4M L;  5GAH c;  2A69 D;  3RZ6 A;  1R0F A;  5C3E L;  4G6B A;  2ERS A;  4AR4 A;  1LTL A;  2QL0 A;  4BY7 L;  1NNQ A;  4A93 L;  3KYY A;  4AI0 A;  5H1S c;  1QQT A;  2C6A A;  1DX8 A;  4X6A L;  3HJY B;  4AI1 A;  4UY8 1;  1TWG L;  3QVD A;  3HJW B;  4A3C L;  7RXN A;  3HOU L;  1PFU A;  3MQK B;  1RYT A;  4AI3 A;  5IYD L;  1NXG A;  2C6B A;  2HR5 A;  5IYB L;  4A3J L;  1NXE A;  5MGN A;  2ERJ A;  1SMM A;  4AHY A;  3HOY L;  2B5I D;  3PIP 1;  4U67 1;  5JVG 1;  5M3M L;  3K35 A;  1OWC A;  1RDV A;  1I3Q L;  2A6E D;  4A3M L;  4AI2 A;  4C3I L;  4BY1 L;  1BRF A;  3LWP B;  1B13 A;  5DM7 1;  2NYD A;  3H9C A;  2AYJ A;  5FJ8 L;  1R0J A;  4Y52 L;  2JI3 A;  3A44 A;  2XJU A;  4BBR L;  1IW7 D; 
#chains in the Genus database with same CATH homology
 4A3B L;  2R92 L;  2NVX L;  1K83 L;  3H3V M;  4QIW P;  2E2I L;  3GTQ L;  4A3L L;  4C2M 1;  5M5W L;  3GTO L;  1Y1V L;  3M3Y L;  4AYB P;  4BBS L;  2YU9 L;  3H0G L;  3S2H L;  5IP9 L;  5M5X L;  5FLM L;  3S15 L;  2R7Z L;  2JA7 L;  3S1M L;  2Y0S P;  4A3K L;  2WB1 P;  3S17 L;  3RZO L;  5C4J L;  3I4M L;  4BXX L;  2JA6 L;  5C3E L;  3GTM L;  1TWA L;  1TWC L;  3I4N L;  1WCM L;  2JA5 L;  2R93 L;  4BY7 L;  2NVQ L;  4A3E L;  1TWH L;  3HOW L;  4A93 L;  3S14 L;  4A3G L;  3RZD L;  3GTK L;  4X6A L;  3HKZ P;  1TWG L;  3FKI L;  3GTJ L;  3HOZ L;  4C3J L;  4A3C L;  3HOU L;  2NVY L;  3S1R L;  5IYD L;  5IP7 L;  5C4X L;  3M4O L;  4A3I L;  2JA8 L;  3K7A L;  4Y7N L;  5IYB L;  1SFO L;  3GTL L;  1Y1W L;  4A3J L;  2NVT L;  5C44 L;  3HOX L;  5IYC L;  1I6H L;  3GTG L;  3HOY L;  3GTP L;  1I50 L;  5M3F L;  3S16 L;  5M3M L;  2VUM L;  3PO3 L;  3S1Q L;  1I3Q L;  4A3M L;  4C3I L;  4BY1 L;  2E2J L;  3HOV L;  3S2D L;  5M5Y L;  4A3F L;  2B63 L;  5FJ8 L;  3PO2 L;  2PMZ P;  2E2H L;  3S1N L;  3CQZ L;  4C3H L;  4Y52 L;  4BBR L;  2WAQ P;  1R9T L;  1TWF L;  4A3D L; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...