1FHMA

X-ray crystal structure of reduced rubredoxin
Total Genus 9
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
9
sequence length
53
structure length
53
Chain Sequence
MKKYTCTVCGYIYNPEDGDPDNGVNPGTDFKDIPDDWVCPLCGVGKDQFEEVE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Leucine 41 is a gate for water entry in the reduction of Clostridium pasteurianum rubredoxin.
pubmed rcsb
molecule tags Electron transport
source organism Clostridium pasteurianum
molecule keywords RUBREDOXIN
total genus 9
structure length 53
sequence length 53
ec nomenclature
pdb deposition date 2000-08-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00301 Rubredoxin Rubredoxin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.20.28.10 Mainly Beta Single Sheet Rubrerythrin, domain 2 Rubrerythrin, domain 2 1fhmA00
1YV1A 1BFYA 1R0GA 1B71A 1RYTA 4TPUA 1BE7A 3SS2A 5RXNA 1T9QA 1T9OA 1YK5A 1FHMA 2K2DA 1BQ8A 3A44A 4AR4A 1QYBA 3KYVA 2LCQA 1B2JA 2PVXA 1RWDA 1SMUA 4POFA 4YWLA 1BRFA 1LTLA 1S30A 1H7VA 1IRNA 2PVEA 6RXNA 1CADA 1YK4A 1LKMA 3PZAA 1RDGA 1CAAA 3QVDA 1SMMA 3KYYA 1FHHA 1RB9A 5IY0A 2KN9A 2DSXA 1RDVA 4POGA 1IU6A 1B13A 3PWFA 1YUZA 1B2OA 1R0IA 2HR5A 3MPSA 1BQ9A 1R0JA 1IROA 7RXNA 1R0FA 1C09A 2PYAA 1E8JA 1S2ZA 1VCXA 2QL0A 1JYBA 1LKPA 4AR6A 2MS3A 4ME3A 8RXNA 4RXNA 1LKOA 1YUXA 3RYGA 4K9FA 2M4YA 2VL6A 2GMGA 5AI3A 4AR5A 1IU5A 5AI2A 1DVBA 2RDVA 3RZTA 1DX8A 3KYXA 1NNQA 1QCVA 2V3BB 3RZ6A 1R0HA 1T9PA 1ZRPA 3KYUA 4AR3A 1SMWA 4YWMA 1S24A 3KYWA 2KKDA
chains in the Genus database with same CATH superfamily
1YV1A 1ODHA 1RYTA 3WWNB 1BE7A 4Y7NL 1T9QA 1T9OA 1YK5A 4WFN1 5IYDL 2LCQA 1B2JA 2PVXA 2YU9L 4XGHA 1SMUA 1NXEA 4BBSL 4A3CL 2R92L 2R93L 3RZDL 1OWBA 1P7PA 5DM61 1VZHA 3HOYL 4C3IL 3S1NL 1CADA 3PO3L 3PZAA 3J7Z1 5IP7L 1SMMA 1RYQA 2E2IL 1RDVA 1IU6A 4A93L 3I4ML 2APOB 4X6AL 2JA6L 2C6BA 4A3IL 3PL5A 4A3DL 1IROA 7RXNA 2J9UB 1C09A 5M3ML 3HOUL 5IYCL 1S2ZA 1VCXA 1VZIA 2QL0A 3S1ML 2V0EA 3LWRB 3HOWL 2VUML 8RXNA 2CR8A 5MFZA 3GTKL 1K83L 1LKOA 2M4YA 3HOVL 3S14L 1TWHL 3S16L 1PZXA 4XXBB 5MGNA 2NYDA 4A3BL 1IW7D 2E2HL 2AYJA 4C2M1 5IYBL 3K35A 1T9PA 4AHYA 3KYUA 4AR3A 1SMWA 4YWMA 2KKDA 3QQCE 4A3KL 2ERJA 1PFVA 1R0GA 1B71A 4AHXA 1I50L 5MFPA 2JI1A 4AI0A 4Y52L 5MLC3 2K2DA 4AR4A 5K2ME 4AI3A 2M4VA 1RWDA 4POFA 1BRFA 3B0AB 2XJTA 1IRNA 2CKAA 6RXNA 2XJPA 2XJVA 4A3GL 3GTQL 3QVDA 2ZIXA 1FHHA 2KN9A 1I3QL 4AI1A 3PKIA 4POGA 5JVG1 3P8BA 4AHWA 2H12A 3VPBE 1B13A 2HVYC 1SFOL 3HOZL 2Z3QB 3MPSA 5GAEc 1BQ9A 3HJWB 3K7AL 4UY81 4A3FL 4JAFA 1R0FA 5FLML 3PKJA 1E8JA 2BE5D 4U671 1LKPA 2MS3A 4ME3A 2AQCA 3H99A 4RXNA 3LWQB 1TWGL 4K9FA 1Y1VL 3FKIL 2GMGA 1WCML 3H3VM 5AI3A 3GTML 1Z92B 3S2HL 5AI2A 3S1RL 1TWFL 2A6HD 3RZ6A 4LHNA 5GAGc 1ZRPA 2Y0SP 3KYWA 3LWVB 3J7Y1 4C3JL 2WAQP 3SS2A 3HJYB 5RXNA 3PIP1 1NXGA 4GS7D 3GTLL 5GADc 1FHMA 1BQ8A 3A44A 2JA5L 3PIO1 1PFWA 3RZOL 2JI3A 4YWLA 4V196 1S30A 2XJQA 2AUSB 2PVEA 2XJUA 5MF6A 5IP9L 1I6HL 3LNLA 5C3EL 2Z3RB 5GAHc 5M3FL 1RDGA 4A3JL 1CAAA 1F4LA 3P2AA 4BXXL 3H0GL 5AN9H 4ZN1B 4JAEA 1RB9A 3NFPI 3HOXL 4LHLA 5H1Sc 2DSXA 2E2JL 1QQTA 2PSMC 1B2OA 3IU3I 4E6YA 4G6BA 1R0IA 2HR5A 3FDJA 2PMZP 3HKZP 4A3LL 3M4OL 1R0JA 2ERSA 2NVTL 1R9TL 5EIOC 2M6PA 2PYAA 2L0ZA 3S2DL 2A69D 3WWLA 3S15L 2XJSA 1JYBA 2C6AA 3H9CA 4JAGA 3I4NL 1YUXA 2NVQL 3S1QL 1VZGA 4A3ML 4JADA 2V0FA 4AI2A 3GTOL 5FJ8L 1DVBA 1PFUA 2JI2A 3MSUA 1DX8A 3KYXA 2B63L 5DM71 2A68D 4BY7L 1WJVA 1BFYA 4BBRL 3H9BA 1Y1WL 4TPUA 5C44L 1OWCA 2JA8L 3B08B 4AHZA 1QYBA 3KYVA 3S17L 3PO2L 1LTLA 1H7VA 3H97A 1TWAL 1YK4A 3HAXC 2JA7L 1LKMA 5EINC 4TVMA 1PFYA 3KYYA 2B5ID 5IY0A 3LWOB 3GTPL 3CQZL 3PWFA 1YUZA 2M6OA 2O5JD 2RFKB 4A3EL 2WB1P 3LPEB 3LWPB 3GTJL 5M5WL 5C4JL 3JR7A 4B8CD 3M3YL 2CKCA 4AR6A 4BY1L 2A6ED 2NVYL 3GTGL 2NVXL 4C3HL 3RYGA 2R7ZL 4AYBP 2VL6A 2EY4E 1TWCL 4AR5A 5M5XL 1IU5A 4ZN3B 3MQKB 2RDVA 2XJRA 3RZTA 5M5YL 3ZG6A 5JVH1 1NNQA 1QCVA 5C4XL 2V3BB 1R0HA 2PPTA 4QIWP 1S24A
chains in the Genus database with same CATH topology
1YV1A 2ERJA 1WJVA 1BFYA 1R0GA 1B71A 1ODHA 1RYTA 4AHXA 4TPUA 5MFPA 2JI1A 1OWCA 3WWNB 1BE7A 4AI0A 3SS2A 5RXNA 1T9QA 5MLC3 3PIP1 1NXGA 4GS7D 3B08B 1T9OA 1YK5A 4AHZA 1FHMA 5GADc 2K2DA 4WFN1 1BQ8A 3A44A 4AR4A 1QYBA 3KYVA 3PIO1 5K2ME 2LCQA 1B2JA 4AI3A 2M4VA 2PVXA 1RWDA 1SMUA 4XGHA 1NXEA 4POFA 2JI3A 4YWLA 1BRFA 4V196 1LTLA 1OWBA 1S30A 2XJQA 3B0AB 1H7VA 5DM61 1VZHA 2XJTA 1IRNA 2PVEA 2XJUA 5MF6A 2CKAA 3LNLA 6RXNA 2XJPA 1CADA 1YK4A 2Z3RB 5GAHc 1LKMA 2XJVA 1RDGA 3PZAA 1CAAA 5EINC 3P2AA 3J7Z1 4TVMA 3QVDA 5AN9H 1SMMA 2ZIXA 2B5ID 3KYYA 4JAEA 4ZN1B 1FHHA 1RB9A 3NFPI 5IY0A 1RYQA 2KN9A 4LHLA 5H1Sc 2DSXA 4AI1A 1RDVA 3PKIA 5JVG1 1IU6A 3P8BA 4POGA 4AHWA 2H12A 3VPBE 1B13A 3PWFA 2PSMC 1YUZA 2M6OA 1B2OA 2C6BA 3IU3I 2O5JD 4E6YA 4G6BA 1R0IA 2HR5A 2Z3QB 3MPSA 5GAEc 1BQ9A 3LPEB 1R0JA 1IROA 2ERSA 7RXNA 4UY81 4JAFA 2J9UB 1R0FA 1C09A 5EIOC 2M6PA 2PYAA 3PKJA 2L0ZA 4B8CD 1E8JA 2A69D 1S2ZA 1VCXA 1VZIA 2BE5D 2QL0A 3WWLA 2V0EA 2XJSA 4U671 1JYBA 2CKCA 1LKPA 2C6AA 2MS3A 4ME3A 4AR6A 2A6ED 4JAGA 8RXNA 4RXNA 2CR8A 5MFZA 1LKOA 1YUXA 3RYGA 4K9FA 2M4YA 2VL6A 1VZGA 2GMGA 4JADA 5AI3A 2V0FA 4AR5A 4AI2A 1Z92B 4XXBB 1IU5A 2NYDA 4ZN3B 5MGNA 5AI2A 1DVBA 2RDVA 1IW7D 2XJRA 3RZTA 2JI2A 3MSUA 3ZG6A 2AYJA 1DX8A 5JVH1 3KYXA 1NNQA 2A6HD 1QCVA 3K35A 5DM71 2V3BB 3RZ6A 1R0HA 1T9PA 4LHNA 5GAGc 1ZRPA 4AHYA 2A68D 3KYUA 4AR3A 2PPTA 1SMWA 4YWMA 1S24A 3KYWA 2KKDA 3QQCE 3J7Y1
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1YV1 A;  1BFY A;  1R0G A;  1B71 A;  1RYT A;  4TPU A;  1BE7 A;  3SS2 A;  5RXN A;  1T9Q A;  1T9O A;  1YK5 A;  1FHM A;  2K2D A;  1BQ8 A;  3A44 A;  4AR4 A;  1QYB A;  3KYV A;  2LCQ A;  1B2J A;  2PVX A;  1RWD A;  1SMU A;  4POF A;  4YWL A;  1BRF A;  1LTL A;  1S30 A;  1H7V A;  1IRN A;  2PVE A;  6RXN A;  1CAD A;  1YK4 A;  1LKM A;  3PZA A;  1RDG A;  1CAA A;  3QVD A;  1SMM A;  3KYY A;  1FHH A;  1RB9 A;  5IY0 A;  2KN9 A;  2DSX A;  1RDV A;  4POG A;  1IU6 A;  1B13 A;  3PWF A;  1YUZ A;  1B2O A;  1R0I A;  2HR5 A;  3MPS A;  1BQ9 A;  1R0J A;  1IRO A;  7RXN A;  1R0F A;  1C09 A;  2PYA A;  1E8J A;  1S2Z A;  1VCX A;  2QL0 A;  1JYB A;  1LKP A;  4AR6 A;  2MS3 A;  4ME3 A;  8RXN A;  4RXN A;  1LKO A;  1YUX A;  3RYG A;  4K9F A;  2M4Y A;  2VL6 A;  2GMG A;  5AI3 A;  4AR5 A;  1IU5 A;  5AI2 A;  1DVB A;  2RDV A;  3RZT A;  1DX8 A;  3KYX A;  1NNQ A;  1QCV A;  2V3B B;  3RZ6 A;  1R0H A;  1T9P A;  1ZRP A;  3KYU A;  4AR3 A;  1SMW A;  4YWM A;  1S24 A;  3KYW A;  2KKD A; 
#chains in the Genus database with same CATH topology
 1YV1 A;  1ODH A;  1RYT A;  3WWN B;  1BE7 A;  4Y7N L;  1T9Q A;  1T9O A;  1YK5 A;  4WFN 1;  5IYD L;  2LCQ A;  1B2J A;  2PVX A;  2YU9 L;  4XGH A;  1SMU A;  1NXE A;  4BBS L;  4A3C L;  2R92 L;  2R93 L;  3RZD L;  1OWB A;  1P7P A;  5DM6 1;  1VZH A;  3HOY L;  4C3I L;  3S1N L;  1CAD A;  3PO3 L;  3PZA A;  3J7Z 1;  5IP7 L;  1SMM A;  1RYQ A;  2E2I L;  1RDV A;  1IU6 A;  4A93 L;  3I4M L;  2APO B;  4X6A L;  2JA6 L;  2C6B A;  4A3I L;  3PL5 A;  4A3D L;  1IRO A;  7RXN A;  2J9U B;  1C09 A;  5M3M L;  3HOU L;  5IYC L;  1S2Z A;  1VCX A;  1VZI A;  2QL0 A;  3S1M L;  2V0E A;  3LWR B;  3HOW L;  2VUM L;  8RXN A;  2CR8 A;  5MFZ A;  3GTK L;  1K83 L;  1LKO A;  2M4Y A;  3HOV L;  3S14 L;  1TWH L;  3S16 L;  1PZX A;  4XXB B;  5MGN A;  2NYD A;  4A3B L;  1IW7 D;  2E2H L;  2AYJ A;  4C2M 1;  5IYB L;  3K35 A;  1T9P A;  4AHY A;  3KYU A;  4AR3 A;  1SMW A;  4YWM A;  2KKD A;  3QQC E;  4A3K L;  2ERJ A;  1PFV A;  1R0G A;  1B71 A;  4AHX A;  1I50 L;  5MFP A;  2JI1 A;  4AI0 A;  4Y52 L;  5MLC 3;  2K2D A;  4AR4 A;  5K2M E;  4AI3 A;  2M4V A;  1RWD A;  4POF A;  1BRF A;  3B0A B;  2XJT A;  1IRN A;  2CKA A;  6RXN A;  2XJP A;  2XJV A;  4A3G L;  3GTQ L;  3QVD A;  2ZIX A;  1FHH A;  2KN9 A;  1I3Q L;  4AI1 A;  3PKI A;  4POG A;  5JVG 1;  3P8B A;  4AHW A;  2H12 A;  3VPB E;  1B13 A;  2HVY C;  1SFO L;  3HOZ L;  2Z3Q B;  3MPS A;  5GAE c;  1BQ9 A;  3HJW B;  3K7A L;  4UY8 1;  4A3F L;  4JAF A;  1R0F A;  5FLM L;  3PKJ A;  1E8J A;  2BE5 D;  4U67 1;  1LKP A;  2MS3 A;  4ME3 A;  2AQC A;  3H99 A;  4RXN A;  3LWQ B;  1TWG L;  4K9F A;  1Y1V L;  3FKI L;  2GMG A;  1WCM L;  3H3V M;  5AI3 A;  3GTM L;  1Z92 B;  3S2H L;  5AI2 A;  3S1R L;  1TWF L;  2A6H D;  3RZ6 A;  4LHN A;  5GAG c;  1ZRP A;  2Y0S P;  3KYW A;  3LWV B;  3J7Y 1;  4C3J L;  2WAQ P;  3SS2 A;  3HJY B;  5RXN A;  3PIP 1;  1NXG A;  4GS7 D;  3GTL L;  5GAD c;  1FHM A;  1BQ8 A;  3A44 A;  2JA5 L;  3PIO 1;  1PFW A;  3RZO L;  2JI3 A;  4YWL A;  4V19 6;  1S30 A;  2XJQ A;  2AUS B;  2PVE A;  2XJU A;  5MF6 A;  5IP9 L;  1I6H L;  3LNL A;  5C3E L;  2Z3R B;  5GAH c;  5M3F L;  1RDG A;  4A3J L;  1CAA A;  1F4L A;  3P2A A;  4BXX L;  3H0G L;  5AN9 H;  4ZN1 B;  4JAE A;  1RB9 A;  3NFP I;  3HOX L;  4LHL A;  5H1S c;  2DSX A;  2E2J L;  1QQT A;  2PSM C;  1B2O A;  3IU3 I;  4E6Y A;  4G6B A;  1R0I A;  2HR5 A;  3FDJ A;  2PMZ P;  3HKZ P;  4A3L L;  3M4O L;  1R0J A;  2ERS A;  2NVT L;  1R9T L;  5EIO C;  2M6P A;  2PYA A;  2L0Z A;  3S2D L;  2A69 D;  3WWL A;  3S15 L;  2XJS A;  1JYB A;  2C6A A;  3H9C A;  4JAG A;  3I4N L;  1YUX A;  2NVQ L;  3S1Q L;  1VZG A;  4A3M L;  4JAD A;  2V0F A;  4AI2 A;  3GTO L;  5FJ8 L;  1DVB A;  1PFU A;  2JI2 A;  3MSU A;  1DX8 A;  3KYX A;  2B63 L;  5DM7 1;  2A68 D;  4BY7 L;  1WJV A;  1BFY A;  4BBR L;  3H9B A;  1Y1W L;  4TPU A;  5C44 L;  1OWC A;  2JA8 L;  3B08 B;  4AHZ A;  1QYB A;  3KYV A;  3S17 L;  3PO2 L;  1LTL A;  1H7V A;  3H97 A;  1TWA L;  1YK4 A;  3HAX C;  2JA7 L;  1LKM A;  5EIN C;  4TVM A;  1PFY A;  3KYY A;  2B5I D;  5IY0 A;  3LWO B;  3GTP L;  3CQZ L;  3PWF A;  1YUZ A;  2M6O A;  2O5J D;  2RFK B;  4A3E L;  2WB1 P;  3LPE B;  3LWP B;  3GTJ L;  5M5W L;  5C4J L;  3JR7 A;  4B8C D;  3M3Y L;  2CKC A;  4AR6 A;  4BY1 L;  2A6E D;  2NVY L;  3GTG L;  2NVX L;  4C3H L;  3RYG A;  2R7Z L;  4AYB P;  2VL6 A;  2EY4 E;  1TWC L;  4AR5 A;  5M5X L;  1IU5 A;  4ZN3 B;  3MQK B;  2RDV A;  2XJR A;  3RZT A;  5M5Y L;  3ZG6 A;  5JVH 1;  1NNQ A;  1QCV A;  5C4X L;  2V3B B;  1R0H A;  2PPT A;  4QIW P;  1S24 A; 
#chains in the Genus database with same CATH homology
 1YV1 A;  2ERJ A;  1WJV A;  1BFY A;  1R0G A;  1B71 A;  1ODH A;  1RYT A;  4AHX A;  4TPU A;  5MFP A;  2JI1 A;  1OWC A;  3WWN B;  1BE7 A;  4AI0 A;  3SS2 A;  5RXN A;  1T9Q A;  5MLC 3;  3PIP 1;  1NXG A;  4GS7 D;  3B08 B;  1T9O A;  1YK5 A;  4AHZ A;  1FHM A;  5GAD c;  2K2D A;  4WFN 1;  1BQ8 A;  3A44 A;  4AR4 A;  1QYB A;  3KYV A;  3PIO 1;  5K2M E;  2LCQ A;  1B2J A;  4AI3 A;  2M4V A;  2PVX A;  1RWD A;  1SMU A;  4XGH A;  1NXE A;  4POF A;  2JI3 A;  4YWL A;  1BRF A;  4V19 6;  1LTL A;  1OWB A;  1S30 A;  2XJQ A;  3B0A B;  1H7V A;  5DM6 1;  1VZH A;  2XJT A;  1IRN A;  2PVE A;  2XJU A;  5MF6 A;  2CKA A;  3LNL A;  6RXN A;  2XJP A;  1CAD A;  1YK4 A;  2Z3R B;  5GAH c;  1LKM A;  2XJV A;  1RDG A;  3PZA A;  1CAA A;  5EIN C;  3P2A A;  3J7Z 1;  4TVM A;  3QVD A;  5AN9 H;  1SMM A;  2ZIX A;  2B5I D;  3KYY A;  4JAE A;  4ZN1 B;  1FHH A;  1RB9 A;  3NFP I;  5IY0 A;  1RYQ A;  2KN9 A;  4LHL A;  5H1S c;  2DSX A;  4AI1 A;  1RDV A;  3PKI A;  5JVG 1;  1IU6 A;  3P8B A;  4POG A;  4AHW A;  2H12 A;  3VPB E;  1B13 A;  3PWF A;  2PSM C;  1YUZ A;  2M6O A;  1B2O A;  2C6B A;  3IU3 I;  2O5J D;  4E6Y A;  4G6B A;  1R0I A;  2HR5 A;  2Z3Q B;  3MPS A;  5GAE c;  1BQ9 A;  3LPE B;  1R0J A;  1IRO A;  2ERS A;  7RXN A;  4UY8 1;  4JAF A;  2J9U B;  1R0F A;  1C09 A;  5EIO C;  2M6P A;  2PYA A;  3PKJ A;  2L0Z A;  4B8C D;  1E8J A;  2A69 D;  1S2Z A;  1VCX A;  1VZI A;  2BE5 D;  2QL0 A;  3WWL A;  2V0E A;  2XJS A;  4U67 1;  1JYB A;  2CKC A;  1LKP A;  2C6A A;  2MS3 A;  4ME3 A;  4AR6 A;  2A6E D;  4JAG A;  8RXN A;  4RXN A;  2CR8 A;  5MFZ A;  1LKO A;  1YUX A;  3RYG A;  4K9F A;  2M4Y A;  2VL6 A;  1VZG A;  2GMG A;  4JAD A;  5AI3 A;  2V0F A;  4AR5 A;  4AI2 A;  1Z92 B;  4XXB B;  1IU5 A;  2NYD A;  4ZN3 B;  5MGN A;  5AI2 A;  1DVB A;  2RDV A;  1IW7 D;  2XJR A;  3RZT A;  2JI2 A;  3MSU A;  3ZG6 A;  2AYJ A;  1DX8 A;  5JVH 1;  3KYX A;  1NNQ A;  2A6H D;  1QCV A;  3K35 A;  5DM7 1;  2V3B B;  3RZ6 A;  1R0H A;  1T9P A;  4LHN A;  5GAG c;  1ZRP A;  4AHY A;  2A68 D;  3KYU A;  4AR3 A;  2PPT A;  1SMW A;  4YWM A;  1S24 A;  3KYW A;  2KKD A;  3QQC E;  3J7Y 1; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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