5M5YL

Rna polymerase i elongation complex 2
Total Genus 3
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
3
sequence length
43
structure length
43
Chain Sequence
KYICAECSSKLSLSRTDAVRCKDCGHRILLKARTKRLVQFEAR
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule keywords DNA-directed RNA polymerase I subunit RPA190
publication title Molecular Structures of Transcribing RNA Polymerase I.
pubmed doi rcsb
molecule tags Transcription
total genus 3
structure length 43
sequence length 43
ec nomenclature
pdb deposition date 2016-10-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
L PF03604 DNA_RNApol_7kD DNA directed RNA polymerase, 7 kDa subunit
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.20.28.30 Mainly Beta Single Sheet Rubrerythrin, domain 2 RNA polymerase ii, chain L 5m5yL00
5IP9L 3RZDL 4BBRL 3S1NL 4BY7L 3S15L 1I50L 4BXXL 3S2DL 5IYBL 3HOVL 3GTGL 3PO2L 2WB1P 3K7AL 2NVXL 4C3HL 2VUML 5C4JL 2Y0SP 5M3FL 1TWFL 3GTJL 1R9TL 5FJ8L 1TWCL 1Y1WL 4AYBP 5C44L 4A3FL 3M4OL 2NVTL 5IYDL 5M5XL 4A3IL 3S1RL 3HOYL 2JA8L 2R92L 3GTOL 5IYCL 1K83L 2YU9L 2JA6L 5IP7L 3HKZP 1I6HL 4A3GL 1Y1VL 4C2M1 4Y7NL 5M5WL 4A3KL 5C3EL 3H3VM 5C4XL 1TWHL 2E2IL 3I4ML 2WAQP 4BBSL 3FKIL 4A3DL 2E2HL 2E2JL 3S16L 5M3ML 1SFOL 5M5YL 2NVYL 3CQZL 2R7ZL 3HOZL 3GTQL 1WCML 3S1QL 1TWGL 4C3JL 3GTKL 1TWAL 4C3IL 3RZOL 4A3EL 5FLML 3S1ML 4A3LL 3GTPL 4BY1L 2JA5L 3GTML 4A3CL 2JA7L 3M3YL 4A3BL 2R93L 3HOWL 3GTLL 3S17L 1I3QL 3S2HL 3I4NL 4A3JL 2PMZP 4Y52L 4A3ML 4QIWP 3PO3L 3HOXL 2B63L 3H0GL 4A93L 2NVQL 4X6AL 3S14L 3HOUL
chains in the Genus database with same CATH superfamily
5IP9L 3RZDL 3LWQB 3JR7A 1S2ZA 2CKCA 3S2DL 5GAGc 3KYUA 1ZRPA 1B2OA 2M4VA 3K7AL 5MLC3 7RXNA 2NVXL 2VUML 2O5JD 3HJWB 5DM61 1SMWA 3IU3I 2A68D 1TWCL 1Y1WL 2HR5A 2AUSB 1R0GA 3M4OL 2NVTL 3WWLA 3QQCE 3HOYL 3GTOL 2APOB 1S30A 4C2M1 1C09A 4Y7NL 5M5WL 4K9FA 1OWCA 1Z92B 4A3KL 5C3EL 3HJYB 4AHXA 3H97A 3I4ML 5H1Sc 5RXNA 2JI2A 2E2JL 2L0ZA 2CR8A 1LKOA 2A6ED 1YUXA 4C3JL 3GTKL 4GS7D 5FLML 4YWMA 2XJQA 4XXBB 5MFZA 3LWVB 2RFKB 2PYAA 1JYBA 2PSMC 3VPBE 5K2ME 1FHHA 2XJSA 1DX8A 2Z3RB 3LWOB 1B2JA 4A3ML 4Y52L 3PL5A 2B63L 2HVYC 3H0GL 4V196 4LHLA 3S1NL 4BY7L 4BXXL 4UY81 3GTGL 1LTLA 2C6BA 1PFVA 5M3FL 1IU5A 2XJVA 1R9TL 3B08B 5FJ8L 1FHMA 1LKMA 1CADA 1YV1A 1S24A 5GAHc 4ME3A 4TPUA 4E6YA 5C44L 3LWRB 1WJVA 2PVEA 4A3IL 3S1RL 2JA8L 1R0JA 5IYCL 1BE7A 1R0HA 1K83L 3RZ6A 2JA6L 2KKDA 5IP7L 4JAFA 1Y1VL 3P2AA 3B0AB 5AI3A 2ERJA 1QQTA 3H3VM 1PZXA 2H12A 3PWFA 1IW7D 2C6AA 2B5ID 1TWHL 4AR3A 4A3DL 3H9BA 4ZN3B 4POGA 2JI1A 5M3ML 1RB9A 3RZTA 1SMMA 4TVMA 3KYYA 3PKIA 1RWDA 1BFYA 3S1QL 1PFUA 1NNQA 1E8JA 3RZOL 1PFWA 2RDVA 5GAEc 2KN9A 1QYBA 5AI2A 4AHWA 3NFPI 3GTML 1R0IA 2JA7L 2A6HD 4A3BL 2R93L 3GTLL 1I3QL 1F4LA 1PFYA 1T9PA 4AHZA 2PMZP 2MS3A 2V0FA 1VZGA 3PO3L 2AYJA 3MSUA 3J7Z1 4AHYA 5MGNA 3FDJA 4JADA 2NVQL 1RYTA 3MPSA 1YUZA 3PIP1 2Z3QB 2JI3A 1I50L 4AR4A 3S15L 5IYBL 3HOVL 4WFN1 3PO2L 2PVXA 1H7VA 5C4JL 2Y0SP 1TWFL 2QL0A 2NYDA 4XGHA 4AYBP 3PKJA 1CAAA 5MF6A 5IYDL 5M5XL 2XJTA 1NXEA 2XJRA 3K35A 1QCVA 1B71A 3HKZP 4A3GL 1YK4A 2J9UB 3LNLA 1IU6A 2A69D 2WAQP 3FKIL 4U671 2E2HL 4AR6A 1SFOL 1RYQA 3QVDA 5M5YL 2NVYL 2M6OA 3CQZL 1BRFA 3HOZL 3GTQL 1WCML 8RXNA 1TWGL 2ERSA 4JAEA 1TWAL 3KYVA 4A3EL 4A3LL 3GTPL 2M6PA 2LCQA 4BY1L 2JA5L 1RDVA 2PPTA 2V3BB 3P8BA 1VCXA 3PZAA 3M3YL 3KYWA 2GMGA 3HOWL 4G6BA 3S17L 1VZIA 2M4YA 1R0FA 4JAGA 1ODHA 1OWBA 3KYXA 2ZIXA 4AI3A 4ZN1B 4A93L 4X6AL 3S14L 1T9QA 1T9OA 3H99A 4BBRL 2V0EA 3H9CA 4AI2A 4LHNA 2WB1P 4C3HL 1BQ9A 1P7PA 2DSXA 3GTJL 5EIOC 3HAXC 5IY0A 5GADc 4A3FL 5AN9H 5JVH1 1BQ8A 2EY4E 2R92L 1LKPA 1IROA 2YU9L 4RXNA 3ZG6A 1I6HL 1B13A 3PIO1 5EINC 3SS2A 5MFPA 4YWLA 1DVBA 5C4XL 2E2IL 4BBSL 1YK5A 2VL6A 2CKAA 3S16L 5JVG1 4AI1A 1RDGA 3WWNB 1NXGA 1VZHA 3RYGA 2K2DA 2XJUA 2R7ZL 2AQCA 4B8CD 4C3IL 3J7Y1 3S1ML 2XJPA 3A44A 4AI0A 4A3CL 6RXNA 3LPEB 4AR5A 3LWPB 3S2HL 3I4NL 4A3JL 4QIWP 3MQKB 1IRNA 3HOXL 1SMUA 5DM71 4POFA 2BE5D 3HOUL
chains in the Genus database with same CATH topology
5IP9L 3RZDL 4BBRL 3S1NL 4BY7L 3S15L 1I50L 4BXXL 3S2DL 5IYBL 3HOVL 3GTGL 3PO2L 2WB1P 3K7AL 2NVXL 4C3HL 2VUML 5C4JL 2Y0SP 5M3FL 1TWFL 3GTJL 1R9TL 5FJ8L 1TWCL 1Y1WL 4AYBP 5C44L 4A3FL 3M4OL 2NVTL 5IYDL 5M5XL 4A3IL 3S1RL 3HOYL 2JA8L 2R92L 3GTOL 5IYCL 1K83L 2YU9L 2JA6L 5IP7L 3HKZP 1I6HL 4A3GL 1Y1VL 4C2M1 4Y7NL 5M5WL 4A3KL 5C3EL 3H3VM 5C4XL 1TWHL 2E2IL 3I4ML 2WAQP 4BBSL 3FKIL 4A3DL 2E2HL 2E2JL 3S16L 5M3ML 1SFOL 5M5YL 2NVYL 3CQZL 2R7ZL 3HOZL 3GTQL 1WCML 3S1QL 1TWGL 4C3JL 3GTKL 1TWAL 4C3IL 3RZOL 4A3EL 5FLML 3S1ML 4A3LL 3GTPL 4BY1L 2JA5L 3GTML 4A3CL 2JA7L 3M3YL 4A3BL 2R93L 3HOWL 3GTLL 3S17L 1I3QL 3S2HL 3I4NL 4A3JL 2PMZP 4Y52L 4A3ML 4QIWP 3PO3L 3HOXL 2B63L 3H0GL 4A93L 2NVQL 4X6AL 3S14L 3HOUL
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5IP9 L;  3RZD L;  4BBR L;  3S1N L;  4BY7 L;  3S15 L;  1I50 L;  4BXX L;  3S2D L;  5IYB L;  3HOV L;  3GTG L;  3PO2 L;  2WB1 P;  3K7A L;  2NVX L;  4C3H L;  2VUM L;  5C4J L;  2Y0S P;  5M3F L;  1TWF L;  3GTJ L;  1R9T L;  5FJ8 L;  1TWC L;  1Y1W L;  4AYB P;  5C44 L;  4A3F L;  3M4O L;  2NVT L;  5IYD L;  5M5X L;  4A3I L;  3S1R L;  3HOY L;  2JA8 L;  2R92 L;  3GTO L;  5IYC L;  1K83 L;  2YU9 L;  2JA6 L;  5IP7 L;  3HKZ P;  1I6H L;  4A3G L;  1Y1V L;  4C2M 1;  4Y7N L;  5M5W L;  4A3K L;  5C3E L;  3H3V M;  5C4X L;  1TWH L;  2E2I L;  3I4M L;  2WAQ P;  4BBS L;  3FKI L;  4A3D L;  2E2H L;  2E2J L;  3S16 L;  5M3M L;  1SFO L;  5M5Y L;  2NVY L;  3CQZ L;  2R7Z L;  3HOZ L;  3GTQ L;  1WCM L;  3S1Q L;  1TWG L;  4C3J L;  3GTK L;  1TWA L;  4C3I L;  3RZO L;  4A3E L;  5FLM L;  3S1M L;  4A3L L;  3GTP L;  4BY1 L;  2JA5 L;  3GTM L;  4A3C L;  2JA7 L;  3M3Y L;  4A3B L;  2R93 L;  3HOW L;  3GTL L;  3S17 L;  1I3Q L;  3S2H L;  3I4N L;  4A3J L;  2PMZ P;  4Y52 L;  4A3M L;  4QIW P;  3PO3 L;  3HOX L;  2B63 L;  3H0G L;  4A93 L;  2NVQ L;  4X6A L;  3S14 L;  3HOU L; 
#chains in the Genus database with same CATH topology
 5IP9 L;  3RZD L;  3LWQ B;  3JR7 A;  1S2Z A;  2CKC A;  3S2D L;  5GAG c;  3KYU A;  1ZRP A;  1B2O A;  2M4V A;  3K7A L;  5MLC 3;  7RXN A;  2NVX L;  2VUM L;  2O5J D;  3HJW B;  5DM6 1;  1SMW A;  3IU3 I;  2A68 D;  1TWC L;  1Y1W L;  2HR5 A;  2AUS B;  1R0G A;  3M4O L;  2NVT L;  3WWL A;  3QQC E;  3HOY L;  3GTO L;  2APO B;  1S30 A;  4C2M 1;  1C09 A;  4Y7N L;  5M5W L;  4K9F A;  1OWC A;  1Z92 B;  4A3K L;  5C3E L;  3HJY B;  4AHX A;  3H97 A;  3I4M L;  5H1S c;  5RXN A;  2JI2 A;  2E2J L;  2L0Z A;  2CR8 A;  1LKO A;  2A6E D;  1YUX A;  4C3J L;  3GTK L;  4GS7 D;  5FLM L;  4YWM A;  2XJQ A;  4XXB B;  5MFZ A;  3LWV B;  2RFK B;  2PYA A;  1JYB A;  2PSM C;  3VPB E;  5K2M E;  1FHH A;  2XJS A;  1DX8 A;  2Z3R B;  3LWO B;  1B2J A;  4A3M L;  4Y52 L;  3PL5 A;  2B63 L;  2HVY C;  3H0G L;  4V19 6;  4LHL A;  3S1N L;  4BY7 L;  4BXX L;  4UY8 1;  3GTG L;  1LTL A;  2C6B A;  1PFV A;  5M3F L;  1IU5 A;  2XJV A;  1R9T L;  3B08 B;  5FJ8 L;  1FHM A;  1LKM A;  1CAD A;  1YV1 A;  1S24 A;  5GAH c;  4ME3 A;  4TPU A;  4E6Y A;  5C44 L;  3LWR B;  1WJV A;  2PVE A;  4A3I L;  3S1R L;  2JA8 L;  1R0J A;  5IYC L;  1BE7 A;  1R0H A;  1K83 L;  3RZ6 A;  2JA6 L;  2KKD A;  5IP7 L;  4JAF A;  1Y1V L;  3P2A A;  3B0A B;  5AI3 A;  2ERJ A;  1QQT A;  3H3V M;  1PZX A;  2H12 A;  3PWF A;  1IW7 D;  2C6A A;  2B5I D;  1TWH L;  4AR3 A;  4A3D L;  3H9B A;  4ZN3 B;  4POG A;  2JI1 A;  5M3M L;  1RB9 A;  3RZT A;  1SMM A;  4TVM A;  3KYY A;  3PKI A;  1RWD A;  1BFY A;  3S1Q L;  1PFU A;  1NNQ A;  1E8J A;  3RZO L;  1PFW A;  2RDV A;  5GAE c;  2KN9 A;  1QYB A;  5AI2 A;  4AHW A;  3NFP I;  3GTM L;  1R0I A;  2JA7 L;  2A6H D;  4A3B L;  2R93 L;  3GTL L;  1I3Q L;  1F4L A;  1PFY A;  1T9P A;  4AHZ A;  2PMZ P;  2MS3 A;  2V0F A;  1VZG A;  3PO3 L;  2AYJ A;  3MSU A;  3J7Z 1;  4AHY A;  5MGN A;  3FDJ A;  4JAD A;  2NVQ L;  1RYT A;  3MPS A;  1YUZ A;  3PIP 1;  2Z3Q B;  2JI3 A;  1I50 L;  4AR4 A;  3S15 L;  5IYB L;  3HOV L;  4WFN 1;  3PO2 L;  2PVX A;  1H7V A;  5C4J L;  2Y0S P;  1TWF L;  2QL0 A;  2NYD A;  4XGH A;  4AYB P;  3PKJ A;  1CAA A;  5MF6 A;  5IYD L;  5M5X L;  2XJT A;  1NXE A;  2XJR A;  3K35 A;  1QCV A;  1B71 A;  3HKZ P;  4A3G L;  1YK4 A;  2J9U B;  3LNL A;  1IU6 A;  2A69 D;  2WAQ P;  3FKI L;  4U67 1;  2E2H L;  4AR6 A;  1SFO L;  1RYQ A;  3QVD A;  5M5Y L;  2NVY L;  2M6O A;  3CQZ L;  1BRF A;  3HOZ L;  3GTQ L;  1WCM L;  8RXN A;  1TWG L;  2ERS A;  4JAE A;  1TWA L;  3KYV A;  4A3E L;  4A3L L;  3GTP L;  2M6P A;  2LCQ A;  4BY1 L;  2JA5 L;  1RDV A;  2PPT A;  2V3B B;  3P8B A;  1VCX A;  3PZA A;  3M3Y L;  3KYW A;  2GMG A;  3HOW L;  4G6B A;  3S17 L;  1VZI A;  2M4Y A;  1R0F A;  4JAG A;  1ODH A;  1OWB A;  3KYX A;  2ZIX A;  4AI3 A;  4ZN1 B;  4A93 L;  4X6A L;  3S14 L;  1T9Q A;  1T9O A;  3H99 A;  4BBR L;  2V0E A;  3H9C A;  4AI2 A;  4LHN A;  2WB1 P;  4C3H L;  1BQ9 A;  1P7P A;  2DSX A;  3GTJ L;  5EIO C;  3HAX C;  5IY0 A;  5GAD c;  4A3F L;  5AN9 H;  5JVH 1;  1BQ8 A;  2EY4 E;  2R92 L;  1LKP A;  1IRO A;  2YU9 L;  4RXN A;  3ZG6 A;  1I6H L;  1B13 A;  3PIO 1;  5EIN C;  3SS2 A;  5MFP A;  4YWL A;  1DVB A;  5C4X L;  2E2I L;  4BBS L;  1YK5 A;  2VL6 A;  2CKA A;  3S16 L;  5JVG 1;  4AI1 A;  1RDG A;  3WWN B;  1NXG A;  1VZH A;  3RYG A;  2K2D A;  2XJU A;  2R7Z L;  2AQC A;  4B8C D;  4C3I L;  3J7Y 1;  3S1M L;  2XJP A;  3A44 A;  4AI0 A;  4A3C L;  6RXN A;  3LPE B;  4AR5 A;  3LWP B;  3S2H L;  3I4N L;  4A3J L;  4QIW P;  3MQK B;  1IRN A;  3HOX L;  1SMU A;  5DM7 1;  4POF A;  2BE5 D;  3HOU L; 
#chains in the Genus database with same CATH homology
 5IP9 L;  3RZD L;  4BBR L;  3S1N L;  4BY7 L;  3S15 L;  1I50 L;  4BXX L;  3S2D L;  5IYB L;  3HOV L;  3GTG L;  3PO2 L;  2WB1 P;  3K7A L;  2NVX L;  4C3H L;  2VUM L;  5C4J L;  2Y0S P;  5M3F L;  1TWF L;  3GTJ L;  1R9T L;  5FJ8 L;  1TWC L;  1Y1W L;  4AYB P;  5C44 L;  4A3F L;  3M4O L;  2NVT L;  5IYD L;  5M5X L;  4A3I L;  3S1R L;  3HOY L;  2JA8 L;  2R92 L;  3GTO L;  5IYC L;  1K83 L;  2YU9 L;  2JA6 L;  5IP7 L;  3HKZ P;  1I6H L;  4A3G L;  1Y1V L;  4C2M 1;  4Y7N L;  5M5W L;  4A3K L;  5C3E L;  3H3V M;  5C4X L;  1TWH L;  2E2I L;  3I4M L;  2WAQ P;  4BBS L;  3FKI L;  4A3D L;  2E2H L;  2E2J L;  3S16 L;  5M3M L;  1SFO L;  5M5Y L;  2NVY L;  3CQZ L;  2R7Z L;  3HOZ L;  3GTQ L;  1WCM L;  3S1Q L;  1TWG L;  4C3J L;  3GTK L;  1TWA L;  4C3I L;  3RZO L;  4A3E L;  5FLM L;  3S1M L;  4A3L L;  3GTP L;  4BY1 L;  2JA5 L;  3GTM L;  4A3C L;  2JA7 L;  3M3Y L;  4A3B L;  2R93 L;  3HOW L;  3GTL L;  3S17 L;  1I3Q L;  3S2H L;  3I4N L;  4A3J L;  2PMZ P;  4Y52 L;  4A3M L;  4QIW P;  3PO3 L;  3HOX L;  2B63 L;  3H0G L;  4A93 L;  2NVQ L;  4X6A L;  3S14 L;  3HOU L; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...