1SMUA

Crystal structure of cp rd l41a mutant in reduced state 1 (drop-reduced)
Total Genus 8
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
8
sequence length
54
structure length
54
Chain Sequence
MKKYTCTVCGYIYNPEDGDPDNGVNPGTDFKDIPDDWVCPACGVGKDQFEEVEE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Electron transport
source organism Clostridium pasteurianum
publication title The unique hydrogen bonded water in the reduced form of Clostridium pasteurianum rubredoxin and its possible role in electron transfer
pubmed doi rcsb
molecule keywords Rubredoxin
total genus 8
structure length 54
sequence length 54
ec nomenclature
pdb deposition date 2004-03-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00301 Rubredoxin Rubredoxin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.20.28.10 Mainly Beta Single Sheet Rubrerythrin, domain 2 Rubrerythrin, domain 2 1smuA00
4AR3A 4YWMA 1R0GA 2KKDA 3QVDA 3RYGA 1R0IA 1R0HA 3KYVA 1BRFA 1RWDA 1B71A 3SS2A 7RXNA 4POFA 1C09A 1T9PA 1LKPA 1NNQA 1S2ZA 2RDVA 5IY0A 1QCVA 1CAAA 4RXNA 2PYAA 3KYWA 1SMWA 6RXNA 4ME3A 4YWLA 5RXNA 3PZAA 3RZ6A 1RB9A 1S24A 1SMMA 1BFYA 1S30A 1CADA 1YK5A 1QYBA 1T9OA 1LKOA 2VL6A 5AI3A 2DSXA 1E8JA 3KYYA 1JYBA 1VCXA 3PWFA 4AR4A 2LCQA 1IU6A 2MS3A 1DVBA 2K2DA 1RDGA 1T9QA 1IRNA 1RYTA 1IU5A 5AI2A 3RZTA 1FHMA 1H7VA 1R0FA 1LKMA 1YK4A 3KYUA 1YUZA 1BE7A 1ZRPA 3KYXA 2GMGA 3MPSA 2PVEA 2QL0A 3A44A 1SMUA 4TPUA 1DX8A 1FHHA 4AR6A 1R0JA 2PVXA 1BQ8A 4POGA 1B2OA 1LTLA 4K9FA 2HR5A 1B2JA 1BQ9A 8RXNA 2M4YA 2V3BB 1IROA 4AR5A 1B13A 1RDVA 2KN9A 1YUXA 1YV1A
chains in the Genus database with same CATH superfamily
2CKCA 1Y1WL 3QVDA 1R0HA 4A3BL 1RWDA 2L0ZA 4AI3A 1B71A 4TVMA 1VZIA 2PPTA 4ZN1B 4QIWP 1C09A 1PZXA 1TWHL 1NNQA 1ODHA 1CAAA 4RXNA 3KYWA 3WWLA 1SMWA 4ME3A 5FJ8L 3IU3I 5C3EL 5IP7L 1RB9A 5MFPA 1SMMA 2XJVA 5IYDL 4A3DL 3S15L 3S14L 5AI3A 4A3JL 2JA6L 2CR8A 3LWPB 1F4LA 3HAXC 1T9QA 1IRNA 2NVYL 5M5WL 3GTJL 2NVTL 4ZN3B 3LWQB 4AI1A 1RYQA 2GMGA 3MPSA 2PVEA 2QL0A 3HJWB 4TPUA 1VZGA 4AR6A 3H0GL 2R93L 3PKIA 3HOZL 3PO3L 3FKIL 3HKZP 3GTOL 4GS7D 1I50L 8RXNA 2M4YA 2A69D 2M6OA 2VUML 2WB1P 4AI0A 2KN9A 4Y7NL 2A6HD 4AHXA 2KKDA 3RYGA 3CQZL 3GTQL 3KYVA 5JVH1 2NVXL 1BRFA 4A3FL 2ERJA 4A93L 2RDVA 2JA5L 5GADc 6RXNA 5EIOC 3J7Z1 1QQTA 2V0EA 2HVYC 4A3ML 3H9BA 1VZHA 1S30A 1YK5A 1K83L 1QYBA 4A3KL 1LKOA 2VL6A 2JI3A 3KYYA 1VCXA 3PWFA 2LCQA 4C3HL 3HJYB 1DVBA 3PKJA 4AHYA 1PFUA 1RYTA 3B08B 1Z92B 3I4NL 3K7AL 1R0FA 2XJRA 1SFOL 3S17L 5MF6A 5H1Sc 4Y52L 1R0JA 2R7ZL 5IP9L 1PFVA 4BBSL 5C4JL 1IW7D 3HOVL 1NXEA 1LTLA 3S2DL 3GTKL 1B2JA 3LWRB 5FLML 2M4VA 1B13A 3HOYL 4B8CD 3MSUA 3HOXL 2B63L 2NVQL 1YV1A 3J7Y1 4AR3A 2PMZP 2PSMC 1I3QL 3H9CA 1R0IA 5M5YL 5M3FL 2E2HL 4A3LL 3RZOL 4V196 3GTML 3ZG6A 4BXXL 4LHNA 3JR7A 7RXNA 2V0FA 1S2ZA 2BE5D 4C3JL 3PO2L 2E2IL 2Z3QB 5M5XL 4AHZA 5GAGc 2XJSA 4C2M1 4YWLA 2XJTA 3H3VM 1TWFL 1TWGL 3RZ6A 2A68D 1BFYA 3LPEB 3S16L 3HOUL 2DSXA 4LHLA 5MFZA 3M3YL 1E8JA 1IU6A 5DM61 1TWCL 2K2DA 3GTLL 1PFYA 2B5ID 1R9TL 5AI2A 5GAEc 4BY7L 1H7VA 1LKMA 2O5JD 5AN9H 3HOWL 4X6AL 3A44A 1SMUA 2AYJA 1DX8A 1FHHA 3PIO1 5IYCL 4XXBB 2AUSB 3LNLA 1I6HL 5DM71 4A3CL 4AYBP 4BBRL 2C6BA 3K35A 2HR5A 1BQ9A 3NFPI 5MLC3 1OWCA 2V3BB 5M3ML 3VPBE 1IROA 4C3IL 3B0AB 4AR5A 2JI1A 1RDVA 3FDJA 1YUXA 4U671 3LWOB 4YWMA 1R0GA 2AQCA 4JAGA 2JA7L 2C6AA 1TWAL 5IYBL 3S2HL 2ERSA 2R92L 4A3GL 1NXGA 1P7PA 3SS2A 4POFA 1T9PA 2A6ED 3P8BA 1LKPA 5IY0A 1QCVA 2PYAA 2WAQP 4E6YA 5GAHc 4A3IL 5RXNA 2EY4E 5EINC 4BY1L 4AI2A 3PZAA 3H97A 1S24A 3M4OL 1CADA 3WWNB 1T9OA 4UY81 5C44L 5C4XL 2JI2A 2RFKB 3S1ML 1JYBA 3QQCE 4AR4A 2MS3A 4JAEA 1RDGA 5K2ME 3GTGL 2ZIXA 1IU5A 3MQKB 3S1NL 3RZTA 1FHMA 2J9UB 2XJQA 1YK4A 3KYUA 1YUZA 1BE7A 1ZRPA 3KYXA 2CKAA 4AHWA 3S1RL 2H12A 2JA8L 2PVXA 1BQ8A 4POGA 2Y0SP 1OWBA 2Z3RB 1B2OA 3LWVB 1Y1VL 2XJPA 2YU9L 3GTPL 3I4ML 4K9FA 3S1QL 5MGNA 3PL5A 4XGHA 2XJUA 1WCML 1PFWA 4G6BA 3H99A 4A3EL 3P2AA 4WFN1 2M6PA 2NYDA 4JAFA 3PIP1 4JADA 3RZDL 2E2JL 5JVG1 1WJVA 2APOB
chains in the Genus database with same CATH topology
3J7Y1 4AR3A 4YWMA 2PSMC 1R0GA 2CKCA 2KKDA 3QVDA 4JAGA 3RYGA 1R0IA 2C6AA 1R0HA 3KYVA 4V196 5JVH1 1BRFA 1RWDA 2ERSA 2L0ZA 4AI3A 1NXGA 3ZG6A 1B71A 4LHNA 1VZIA 2PPTA 4TVMA 3SS2A 2ERJA 4ZN1B 7RXNA 4POFA 1C09A 1T9PA 2A6ED 2V0FA 3P8BA 1LKPA 1NNQA 1S2ZA 2RDVA 5IY0A 2BE5D 1QCVA 1ODHA 1CAAA 4RXNA 2PYAA 2Z3QB 3KYWA 3WWLA 4AHZA 4E6YA 1SMWA 5GAGc 2XJSA 5GADc 5GAHc 6RXNA 4ME3A 5EIOC 4YWLA 3IU3I 3J7Z1 2XJTA 5RXNA 5EINC 4AI2A 2V0EA 3PZAA 2A68D 3RZ6A 1RB9A 1S24A 5MFPA 1SMMA 1BFYA 3LPEB 1VZHA 1S30A 2XJVA 1CADA 1YK5A 3WWNB 1QYBA 1T9OA 4UY81 1LKOA 2VL6A 5AI3A 2JI2A 2JI3A 2DSXA 4LHLA 5MFZA 3KYYA 1E8JA 1JYBA 1VCXA 3PWFA 3QQCE 4AR4A 2LCQA 1IU6A 2MS3A 1DVBA 2CR8A 4JAEA 5DM61 2K2DA 1RDGA 1T9QA 3PKJA 1IRNA 4AHYA 2B5ID 5K2ME 2ZIXA 1RYTA 3B08B 1IU5A 5AI2A 3RZTA 1FHMA 1Z92B 5GAEc 2J9UB 1H7VA 2XJQA 1LKMA 1YK4A 1R0FA 2O5JD 3KYUA 1YUZA 4ZN3B 1BE7A 1ZRPA 3KYXA 4AI1A 1RYQA 2CKAA 2GMGA 2XJRA 3MPSA 4AHWA 5AN9H 2PVEA 2QL0A 3A44A 1SMUA 2H12A 2AYJA 4TPUA 1DX8A 5MF6A 1VZGA 5H1Sc 1FHHA 4AR6A 3PIO1 1R0JA 2PVXA 1BQ8A 3PKIA 4XXBB 4POGA 3LNLA 1OWBA 2Z3RB 5DM71 1B2OA 1IW7D 2XJPA 1NXEA 1LTLA 2C6BA 4K9FA 4GS7D 3K35A 2HR5A 5MGNA 1B2JA 1BQ9A 3NFPI 4XGHA 8RXNA 2M4YA 2XJUA 5MLC3 1OWCA 2A69D 2V3BB 4G6BA 2M4VA 3VPBE 1IROA 2M6OA 3B0AB 4AR5A 3P2AA 1B13A 4WFN1 2JI1A 4B8CD 1RDVA 2M6PA 2NYDA 4AI0A 4JAFA 3PIP1 2KN9A 3MSUA 4U671 1YUXA 2A6HD 4JADA 5JVG1 1WJVA 4AHXA 1YV1A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4AR3 A;  4YWM A;  1R0G A;  2KKD A;  3QVD A;  3RYG A;  1R0I A;  1R0H A;  3KYV A;  1BRF A;  1RWD A;  1B71 A;  3SS2 A;  7RXN A;  4POF A;  1C09 A;  1T9P A;  1LKP A;  1NNQ A;  1S2Z A;  2RDV A;  5IY0 A;  1QCV A;  1CAA A;  4RXN A;  2PYA A;  3KYW A;  1SMW A;  6RXN A;  4ME3 A;  4YWL A;  5RXN A;  3PZA A;  3RZ6 A;  1RB9 A;  1S24 A;  1SMM A;  1BFY A;  1S30 A;  1CAD A;  1YK5 A;  1QYB A;  1T9O A;  1LKO A;  2VL6 A;  5AI3 A;  2DSX A;  1E8J A;  3KYY A;  1JYB A;  1VCX A;  3PWF A;  4AR4 A;  2LCQ A;  1IU6 A;  2MS3 A;  1DVB A;  2K2D A;  1RDG A;  1T9Q A;  1IRN A;  1RYT A;  1IU5 A;  5AI2 A;  3RZT A;  1FHM A;  1H7V A;  1R0F A;  1LKM A;  1YK4 A;  3KYU A;  1YUZ A;  1BE7 A;  1ZRP A;  3KYX A;  2GMG A;  3MPS A;  2PVE A;  2QL0 A;  3A44 A;  1SMU A;  4TPU A;  1DX8 A;  1FHH A;  4AR6 A;  1R0J A;  2PVX A;  1BQ8 A;  4POG A;  1B2O A;  1LTL A;  4K9F A;  2HR5 A;  1B2J A;  1BQ9 A;  8RXN A;  2M4Y A;  2V3B B;  1IRO A;  4AR5 A;  1B13 A;  1RDV A;  2KN9 A;  1YUX A;  1YV1 A; 
#chains in the Genus database with same CATH topology
 2CKC A;  1Y1W L;  3QVD A;  1R0H A;  4A3B L;  1RWD A;  2L0Z A;  4AI3 A;  1B71 A;  4TVM A;  1VZI A;  2PPT A;  4ZN1 B;  4QIW P;  1C09 A;  1PZX A;  1TWH L;  1NNQ A;  1ODH A;  1CAA A;  4RXN A;  3KYW A;  3WWL A;  1SMW A;  4ME3 A;  5FJ8 L;  3IU3 I;  5C3E L;  5IP7 L;  1RB9 A;  5MFP A;  1SMM A;  2XJV A;  5IYD L;  4A3D L;  3S15 L;  3S14 L;  5AI3 A;  4A3J L;  2JA6 L;  2CR8 A;  3LWP B;  1F4L A;  3HAX C;  1T9Q A;  1IRN A;  2NVY L;  5M5W L;  3GTJ L;  2NVT L;  4ZN3 B;  3LWQ B;  4AI1 A;  1RYQ A;  2GMG A;  3MPS A;  2PVE A;  2QL0 A;  3HJW B;  4TPU A;  1VZG A;  4AR6 A;  3H0G L;  2R93 L;  3PKI A;  3HOZ L;  3PO3 L;  3FKI L;  3HKZ P;  3GTO L;  4GS7 D;  1I50 L;  8RXN A;  2M4Y A;  2A69 D;  2M6O A;  2VUM L;  2WB1 P;  4AI0 A;  2KN9 A;  4Y7N L;  2A6H D;  4AHX A;  2KKD A;  3RYG A;  3CQZ L;  3GTQ L;  3KYV A;  5JVH 1;  2NVX L;  1BRF A;  4A3F L;  2ERJ A;  4A93 L;  2RDV A;  2JA5 L;  5GAD c;  6RXN A;  5EIO C;  3J7Z 1;  1QQT A;  2V0E A;  2HVY C;  4A3M L;  3H9B A;  1VZH A;  1S30 A;  1YK5 A;  1K83 L;  1QYB A;  4A3K L;  1LKO A;  2VL6 A;  2JI3 A;  3KYY A;  1VCX A;  3PWF A;  2LCQ A;  4C3H L;  3HJY B;  1DVB A;  3PKJ A;  4AHY A;  1PFU A;  1RYT A;  3B08 B;  1Z92 B;  3I4N L;  3K7A L;  1R0F A;  2XJR A;  1SFO L;  3S17 L;  5MF6 A;  5H1S c;  4Y52 L;  1R0J A;  2R7Z L;  5IP9 L;  1PFV A;  4BBS L;  5C4J L;  1IW7 D;  3HOV L;  1NXE A;  1LTL A;  3S2D L;  3GTK L;  1B2J A;  3LWR B;  5FLM L;  2M4V A;  1B13 A;  3HOY L;  4B8C D;  3MSU A;  3HOX L;  2B63 L;  2NVQ L;  1YV1 A;  3J7Y 1;  4AR3 A;  2PMZ P;  2PSM C;  1I3Q L;  3H9C A;  1R0I A;  5M5Y L;  5M3F L;  2E2H L;  4A3L L;  3RZO L;  4V19 6;  3GTM L;  3ZG6 A;  4BXX L;  4LHN A;  3JR7 A;  7RXN A;  2V0F A;  1S2Z A;  2BE5 D;  4C3J L;  3PO2 L;  2E2I L;  2Z3Q B;  5M5X L;  4AHZ A;  5GAG c;  2XJS A;  4C2M 1;  4YWL A;  2XJT A;  3H3V M;  1TWF L;  1TWG L;  3RZ6 A;  2A68 D;  1BFY A;  3LPE B;  3S16 L;  3HOU L;  2DSX A;  4LHL A;  5MFZ A;  3M3Y L;  1E8J A;  1IU6 A;  5DM6 1;  1TWC L;  2K2D A;  3GTL L;  1PFY A;  2B5I D;  1R9T L;  5AI2 A;  5GAE c;  4BY7 L;  1H7V A;  1LKM A;  2O5J D;  5AN9 H;  3HOW L;  4X6A L;  3A44 A;  1SMU A;  2AYJ A;  1DX8 A;  1FHH A;  3PIO 1;  5IYC L;  4XXB B;  2AUS B;  3LNL A;  1I6H L;  5DM7 1;  4A3C L;  4AYB P;  4BBR L;  2C6B A;  3K35 A;  2HR5 A;  1BQ9 A;  3NFP I;  5MLC 3;  1OWC A;  2V3B B;  5M3M L;  3VPB E;  1IRO A;  4C3I L;  3B0A B;  4AR5 A;  2JI1 A;  1RDV A;  3FDJ A;  1YUX A;  4U67 1;  3LWO B;  4YWM A;  1R0G A;  2AQC A;  4JAG A;  2JA7 L;  2C6A A;  1TWA L;  5IYB L;  3S2H L;  2ERS A;  2R92 L;  4A3G L;  1NXG A;  1P7P A;  3SS2 A;  4POF A;  1T9P A;  2A6E D;  3P8B A;  1LKP A;  5IY0 A;  1QCV A;  2PYA A;  2WAQ P;  4E6Y A;  5GAH c;  4A3I L;  5RXN A;  2EY4 E;  5EIN C;  4BY1 L;  4AI2 A;  3PZA A;  3H97 A;  1S24 A;  3M4O L;  1CAD A;  3WWN B;  1T9O A;  4UY8 1;  5C44 L;  5C4X L;  2JI2 A;  2RFK B;  3S1M L;  1JYB A;  3QQC E;  4AR4 A;  2MS3 A;  4JAE A;  1RDG A;  5K2M E;  3GTG L;  2ZIX A;  1IU5 A;  3MQK B;  3S1N L;  3RZT A;  1FHM A;  2J9U B;  2XJQ A;  1YK4 A;  3KYU A;  1YUZ A;  1BE7 A;  1ZRP A;  3KYX A;  2CKA A;  4AHW A;  3S1R L;  2H12 A;  2JA8 L;  2PVX A;  1BQ8 A;  4POG A;  2Y0S P;  1OWB A;  2Z3R B;  1B2O A;  3LWV B;  1Y1V L;  2XJP A;  2YU9 L;  3GTP L;  3I4M L;  4K9F A;  3S1Q L;  5MGN A;  3PL5 A;  4XGH A;  2XJU A;  1WCM L;  1PFW A;  4G6B A;  3H99 A;  4A3E L;  3P2A A;  4WFN 1;  2M6P A;  2NYD A;  4JAF A;  3PIP 1;  4JAD A;  3RZD L;  2E2J L;  5JVG 1;  1WJV A;  2APO B; 
#chains in the Genus database with same CATH homology
 3J7Y 1;  4AR3 A;  4YWM A;  2PSM C;  1R0G A;  2CKC A;  2KKD A;  3QVD A;  4JAG A;  3RYG A;  1R0I A;  2C6A A;  1R0H A;  3KYV A;  4V19 6;  5JVH 1;  1BRF A;  1RWD A;  2ERS A;  2L0Z A;  4AI3 A;  1NXG A;  3ZG6 A;  1B71 A;  4LHN A;  1VZI A;  2PPT A;  4TVM A;  3SS2 A;  2ERJ A;  4ZN1 B;  7RXN A;  4POF A;  1C09 A;  1T9P A;  2A6E D;  2V0F A;  3P8B A;  1LKP A;  1NNQ A;  1S2Z A;  2RDV A;  5IY0 A;  2BE5 D;  1QCV A;  1ODH A;  1CAA A;  4RXN A;  2PYA A;  2Z3Q B;  3KYW A;  3WWL A;  4AHZ A;  4E6Y A;  1SMW A;  5GAG c;  2XJS A;  5GAD c;  5GAH c;  6RXN A;  4ME3 A;  5EIO C;  4YWL A;  3IU3 I;  3J7Z 1;  2XJT A;  5RXN A;  5EIN C;  4AI2 A;  2V0E A;  3PZA A;  2A68 D;  3RZ6 A;  1RB9 A;  1S24 A;  5MFP A;  1SMM A;  1BFY A;  3LPE B;  1VZH A;  1S30 A;  2XJV A;  1CAD A;  1YK5 A;  3WWN B;  1QYB A;  1T9O A;  4UY8 1;  1LKO A;  2VL6 A;  5AI3 A;  2JI2 A;  2JI3 A;  2DSX A;  4LHL A;  5MFZ A;  3KYY A;  1E8J A;  1JYB A;  1VCX A;  3PWF A;  3QQC E;  4AR4 A;  2LCQ A;  1IU6 A;  2MS3 A;  1DVB A;  2CR8 A;  4JAE A;  5DM6 1;  2K2D A;  1RDG A;  1T9Q A;  3PKJ A;  1IRN A;  4AHY A;  2B5I D;  5K2M E;  2ZIX A;  1RYT A;  3B08 B;  1IU5 A;  5AI2 A;  3RZT A;  1FHM A;  1Z92 B;  5GAE c;  2J9U B;  1H7V A;  2XJQ A;  1LKM A;  1YK4 A;  1R0F A;  2O5J D;  3KYU A;  1YUZ A;  4ZN3 B;  1BE7 A;  1ZRP A;  3KYX A;  4AI1 A;  1RYQ A;  2CKA A;  2GMG A;  2XJR A;  3MPS A;  4AHW A;  5AN9 H;  2PVE A;  2QL0 A;  3A44 A;  1SMU A;  2H12 A;  2AYJ A;  4TPU A;  1DX8 A;  5MF6 A;  1VZG A;  5H1S c;  1FHH A;  4AR6 A;  3PIO 1;  1R0J A;  2PVX A;  1BQ8 A;  3PKI A;  4XXB B;  4POG A;  3LNL A;  1OWB A;  2Z3R B;  5DM7 1;  1B2O A;  1IW7 D;  2XJP A;  1NXE A;  1LTL A;  2C6B A;  4K9F A;  4GS7 D;  3K35 A;  2HR5 A;  5MGN A;  1B2J A;  1BQ9 A;  3NFP I;  4XGH A;  8RXN A;  2M4Y A;  2XJU A;  5MLC 3;  1OWC A;  2A69 D;  2V3B B;  4G6B A;  2M4V A;  3VPB E;  1IRO A;  2M6O A;  3B0A B;  4AR5 A;  3P2A A;  1B13 A;  4WFN 1;  2JI1 A;  4B8C D;  1RDV A;  2M6P A;  2NYD A;  4AI0 A;  4JAF A;  3PIP 1;  2KN9 A;  3MSU A;  4U67 1;  1YUX A;  2A6H D;  4JAD A;  5JVG 1;  1WJV A;  4AHX A;  1YV1 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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