2M4VA

Mycobacterium tuberculosis rna polymerase binding protein a (rbpa) and its interactions with sigma factors
Total Genus 11
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
11
sequence length
80
structure length
80
Chain Sequence
SMADRVLRGSRLGAVSYETDRNHDLAPRQIARYRTDNGEEFEVPFADDAEIPGTWLCRNGMEGTLIEGDLPEPKKVKPPR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Mycobacterium tuberculosis RNA polymerase-binding protein A (RbpA) and its interactions with sigma factors.
pubmed doi rcsb
molecule tags Transcription
source organism Mycobacterium tuberculosis
molecule keywords Putative uncharacterized protein
total genus 11
structure length 80
sequence length 80
ec nomenclature
pdb deposition date 2013-02-11
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.20.28.270 Mainly Beta Single Sheet Rubrerythrin, domain 2 Rubrerythrin, domain 2 2m4vA00
2M6OA 2M4VA 2M6PA
chains in the Genus database with same CATH superfamily
2ERSA 2JA6L 3PZAA 1BRFA 2PVXA 2KN9A 4A3CL 5MF6A 1B13A 1PFVA 1IROA 1LKOA 1SFOL 3PIP1 3H99A 3I4ML 1IW7D 2PSMC 3RZ6A 2RFKB 3WWNB 4UY81 2C6AA 2XJTA 5AN9H 2APOB 2VL6A 1BE7A 5C4XL 2QL0A 2PYAA 2R93L 5MFPA 2WB1P 3P2AA 2E2IL 2GMGA 3GTOL 4LHNA 2V0EA 1R0FA 2JA8L 1R0GA 6RXNA 4AYBP 3S16L 5MLC3 1IU5A 1YV1A 1H7VA 4BBSL 2JI2A 3LWQB 3KYUA 3PO2L 2NVTL 4C3JL 5IYDL 1WJVA 5AI3A 3B0AB 1R0HA 2PMZP 2YU9L 3MSUA 3PWFA 1YUXA 2RDVA 4E6YA 3HOYL 3S1ML 1LKPA 3SS2A 1TWGL 1S30A 4QIWP 1PZXA 5IP9L 4JADA 3KYXA 1CADA 3KYWA 5IY0A 3RZOL 4POFA 3PKIA 5GAEc 5M5WL 2C6BA 3VPBE 3RYGA 3GTQL 4A3IL 3KYVA 2KKDA 5FJ8L 1TWAL 4A3EL 2O5JD 3J7Y1 1YUZA 3HOXL 1R0JA 1NXEA 3IU3I 1TWCL 1F4LA 1S24A 1VZHA 3GTML 3GTJL 1NXGA 2CR8A 2MS3A 1K83L 5K2ME 1R0IA 3S1QL 4AHZA 2JA7L 1RWDA 4LHLA 2WAQP 2R92L 1Z92B 4ME3A 3PO3L 5C3EL 4AI3A 5FLML 2L0ZA 3HJYB 4POGA 2XJSA 4AR5A 5GAGc 3PL5A 2AYJA 1VZIA 1RDVA 3LNLA 2AQCA 5C4JL 1Y1VL 4AR3A 2BE5D 2B5ID 1WCML 1VZGA 4JAGA 5RXNA 1ODHA 1I3QL 1T9QA 1VCXA 3CQZL 3HKZP 2M6OA 3S1NL 4ZN3B 2NVQL 2M4YA 5MGNA 3GTGL 3PIO1 2AUSB 2XJQA 1ZRPA 3RZTA 4A3DL 4BBRL 4A3BL 1S2ZA 2J9UB 1B2JA 2NVXL 4C3IL 1Y1WL 5M5YL 1IRNA 3S1RL 4XGHA 3QVDA 8RXNA 4ZN1B 1BQ9A 3J7Z1 1C09A 4YWMA 4V196 2H12A 3RZDL 5C44L 2JI3A 1FHMA 5AI2A 3KYYA 4K9FA 4A3FL 2DSXA 2E2HL 1DVBA 4YWLA 1SMUA 5IP7L 1TWHL 1P7PA 2JA5L 1B2OA 1RYTA 2XJRA 4AI2A 2VUML 1NNQA 3HOVL 3MPSA 5M3FL 3P8BA 2K2DA 7RXNA 4TPUA 4AI0A 5GAHc 1FHHA 1RYQA 2Z3RB 3H9CA 4C2M1 3S14L 4Y7NL 1I6HL 1T9PA 3LWRB 4A3JL 1PFWA 2Y0SP 5GADc 3K35A 3A44A 5EINC 3S2HL 3I4NL 3PKJA 3K7AL 2CKCA 2XJUA 1E8JA 2A6HD 1PFYA 1QYBA 3HOWL 2A69D 2A6ED 2HVYC 3ZG6A 3LWVB 3LWPB 4B8CD 1YK5A 4X6AL 2R7ZL 5JVG1 4BY7L 1OWBA 1QCVA 3FKIL 3S17L 1JYBA 4C3HL 4A3KL 5H1Sc 5MFZA 2XJVA 3S2DL 3GTKL 3QQCE 3H0GL 3FDJA 3B08B 4A3LL 1YK4A 1IU6A 4AHXA 1DX8A 4XXBB 4A3GL 2ERJA 4Y52L 4AI1A 4AR4A 1LKMA 1BFYA 3M3YL 2M4VA 1CAAA 2Z3QB 5EIOC 4AHYA 2CKAA 4A93L 1QQTA 3HAXC 4TVMA 3H97A 4RXNA 5IYBL 3H9BA 4JAEA 4A3ML 2PPTA 1PFUA 4U671 1RDGA 4AHWA 2E2JL 3GTPL 3JR7A 1OWCA 2B63L 3LPEB 2JI1A 2A68D 2V3BB 3H3VM 5DM71 4AR6A 4JAFA 5M5XL 3HJWB 1R9TL 3M4OL 1SMMA 2LCQA 5IYCL 3HOZL 4WFN1 5JVH1 3GTLL 3WWLA 2HR5A 5M3ML 1TWFL 5DM61 1LTLA 2XJPA 2NVYL 1SMWA 2PVEA 2ZIXA 1RB9A 4GS7D 3HOUL 3S15L 2NYDA 4G6BA 4BY1L 3MQKB 2V0FA 1B71A 3LWOB 1I50L 2EY4E 3NFPI 2M6PA 4BXXL 1T9OA 1BQ8A
chains in the Genus database with same CATH topology
2ERSA 3J7Y1 1S2ZA 5MFZA 2J9UB 2XJVA 1B2JA 3PZAA 1BRFA 2PVXA 2KN9A 3PKIA 3QQCE 5GAEc 5MF6A 2C6BA 1IRNA 3VPBE 1B13A 3RYGA 1IROA 1LKOA 3KYVA 2KKDA 3PIP1 3B08B 4XGHA 3QVDA 1YK4A 1YUZA 4ZN1B 8RXNA 1IU6A 1BQ9A 1C09A 1IW7D 2PSMC 4YWMA 3RZ6A 4AHXA 2H12A 3J7Z1 4V196 3WWNB 1R0JA 1DX8A 4XXBB 4UY81 2C6AA 1NXEA 2XJTA 5AN9H 2JI3A 3IU3I 1FHMA 1S24A 2ERJA 1VZHA 2VL6A 4AI1A 5AI2A 1BE7A 3KYYA 4K9FA 4AR4A 1LKMA 2QL0A 2PYAA 2DSXA 1BFYA 1DVBA 1NXGA 2CR8A 5MFPA 3P2AA 2M4VA 1CAAA 2Z3QB 2MS3A 5K2ME 4YWLA 5EIOC 1SMUA 4AHYA 2GMGA 2CKAA 4LHNA 1R0IA 2V0EA 1R0FA 4TVMA 4AHZA 1B2OA 1RYTA 2XJRA 4RXNA 1R0GA 4AI2A 1RWDA 1NNQA 6RXNA 4LHLA 3MPSA 4JAEA 1Z92B 4ME3A 2PPTA 3P8BA 4U671 2K2DA 1RDGA 5MLC3 4AI3A 4AHWA 2L0ZA 7RXNA 4TPUA 1IU5A 4POGA 2XJSA 4AR5A 4AI0A 5GAHc 1FHHA 1OWCA 1RYQA 1YV1A 2Z3RB 1H7VA 3LPEB 5GAGc 2JI1A 2JI2A 2A68D 2AYJA 2V3BB 1T9PA 5DM71 1VZIA 3KYUA 4AR6A 1RDVA 4JAFA 3LNLA 1SMMA 4AR3A 3K35A 3A44A 2LCQA 5GADc 2BE5D 5EINC 2B5ID 3PKJA 1VZGA 4JAGA 1WJVA 4WFN1 5AI3A 3B0AB 1R0HA 5RXNA 5JVH1 2CKCA 3WWLA 2HR5A 2XJUA 1E8JA 2A6HD 1ODHA 5DM61 1LTLA 1QYBA 2XJPA 2A69D 1SMWA 2A6ED 2PVEA 1T9QA 2ZIXA 1VCXA 1RB9A 1YUXA 3MSUA 3PWFA 4GS7D 2RDVA 2NYDA 3ZG6A 4E6YA 2M6OA 4ZN3B 1LKPA 4G6BA 3SS2A 1S30A 2M4YA 5MGNA 4B8CD 1YK5A 2V0FA 1B71A 5JVG1 3PIO1 4JADA 1OWBA 3KYXA 1QCVA 1CADA 3NFPI 2M6PA 2XJQA 1ZRPA 1T9OA 1BQ8A 1JYBA 3KYWA 5IY0A 3RZTA 2O5JD 4POFA 5H1Sc
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2M6O A;  2M4V A;  2M6P A; 
#chains in the Genus database with same CATH topology
 2ERS A;  2JA6 L;  3PZA A;  1BRF A;  2PVX A;  2KN9 A;  4A3C L;  5MF6 A;  1B13 A;  1PFV A;  1IRO A;  1LKO A;  1SFO L;  3PIP 1;  3H99 A;  3I4M L;  1IW7 D;  2PSM C;  3RZ6 A;  2RFK B;  3WWN B;  4UY8 1;  2C6A A;  2XJT A;  5AN9 H;  2APO B;  2VL6 A;  1BE7 A;  5C4X L;  2QL0 A;  2PYA A;  2R93 L;  5MFP A;  2WB1 P;  3P2A A;  2E2I L;  2GMG A;  3GTO L;  4LHN A;  2V0E A;  1R0F A;  2JA8 L;  1R0G A;  6RXN A;  4AYB P;  3S16 L;  5MLC 3;  1IU5 A;  1YV1 A;  1H7V A;  4BBS L;  2JI2 A;  3LWQ B;  3KYU A;  3PO2 L;  2NVT L;  4C3J L;  5IYD L;  1WJV A;  5AI3 A;  3B0A B;  1R0H A;  2PMZ P;  2YU9 L;  3MSU A;  3PWF A;  1YUX A;  2RDV A;  4E6Y A;  3HOY L;  3S1M L;  1LKP A;  3SS2 A;  1TWG L;  1S30 A;  4QIW P;  1PZX A;  5IP9 L;  4JAD A;  3KYX A;  1CAD A;  3KYW A;  5IY0 A;  3RZO L;  4POF A;  3PKI A;  5GAE c;  5M5W L;  2C6B A;  3VPB E;  3RYG A;  3GTQ L;  4A3I L;  3KYV A;  2KKD A;  5FJ8 L;  1TWA L;  4A3E L;  2O5J D;  3J7Y 1;  1YUZ A;  3HOX L;  1R0J A;  1NXE A;  3IU3 I;  1TWC L;  1F4L A;  1S24 A;  1VZH A;  3GTM L;  3GTJ L;  1NXG A;  2CR8 A;  2MS3 A;  1K83 L;  5K2M E;  1R0I A;  3S1Q L;  4AHZ A;  2JA7 L;  1RWD A;  4LHL A;  2WAQ P;  2R92 L;  1Z92 B;  4ME3 A;  3PO3 L;  5C3E L;  4AI3 A;  5FLM L;  2L0Z A;  3HJY B;  4POG A;  2XJS A;  4AR5 A;  5GAG c;  3PL5 A;  2AYJ A;  1VZI A;  1RDV A;  3LNL A;  2AQC A;  5C4J L;  1Y1V L;  4AR3 A;  2BE5 D;  2B5I D;  1WCM L;  1VZG A;  4JAG A;  5RXN A;  1ODH A;  1I3Q L;  1T9Q A;  1VCX A;  3CQZ L;  3HKZ P;  2M6O A;  3S1N L;  4ZN3 B;  2NVQ L;  2M4Y A;  5MGN A;  3GTG L;  3PIO 1;  2AUS B;  2XJQ A;  1ZRP A;  3RZT A;  4A3D L;  4BBR L;  4A3B L;  1S2Z A;  2J9U B;  1B2J A;  2NVX L;  4C3I L;  1Y1W L;  5M5Y L;  1IRN A;  3S1R L;  4XGH A;  3QVD A;  8RXN A;  4ZN1 B;  1BQ9 A;  3J7Z 1;  1C09 A;  4YWM A;  4V19 6;  2H12 A;  3RZD L;  5C44 L;  2JI3 A;  1FHM A;  5AI2 A;  3KYY A;  4K9F A;  4A3F L;  2DSX A;  2E2H L;  1DVB A;  4YWL A;  1SMU A;  5IP7 L;  1TWH L;  1P7P A;  2JA5 L;  1B2O A;  1RYT A;  2XJR A;  4AI2 A;  2VUM L;  1NNQ A;  3HOV L;  3MPS A;  5M3F L;  3P8B A;  2K2D A;  7RXN A;  4TPU A;  4AI0 A;  5GAH c;  1FHH A;  1RYQ A;  2Z3R B;  3H9C A;  4C2M 1;  3S14 L;  4Y7N L;  1I6H L;  1T9P A;  3LWR B;  4A3J L;  1PFW A;  2Y0S P;  5GAD c;  3K35 A;  3A44 A;  5EIN C;  3S2H L;  3I4N L;  3PKJ A;  3K7A L;  2CKC A;  2XJU A;  1E8J A;  2A6H D;  1PFY A;  1QYB A;  3HOW L;  2A69 D;  2A6E D;  2HVY C;  3ZG6 A;  3LWV B;  3LWP B;  4B8C D;  1YK5 A;  4X6A L;  2R7Z L;  5JVG 1;  4BY7 L;  1OWB A;  1QCV A;  3FKI L;  3S17 L;  1JYB A;  4C3H L;  4A3K L;  5H1S c;  5MFZ A;  2XJV A;  3S2D L;  3GTK L;  3QQC E;  3H0G L;  3FDJ A;  3B08 B;  4A3L L;  1YK4 A;  1IU6 A;  4AHX A;  1DX8 A;  4XXB B;  4A3G L;  2ERJ A;  4Y52 L;  4AI1 A;  4AR4 A;  1LKM A;  1BFY A;  3M3Y L;  2M4V A;  1CAA A;  2Z3Q B;  5EIO C;  4AHY A;  2CKA A;  4A93 L;  1QQT A;  3HAX C;  4TVM A;  3H97 A;  4RXN A;  5IYB L;  3H9B A;  4JAE A;  4A3M L;  2PPT A;  1PFU A;  4U67 1;  1RDG A;  4AHW A;  2E2J L;  3GTP L;  3JR7 A;  1OWC A;  2B63 L;  3LPE B;  2JI1 A;  2A68 D;  2V3B B;  3H3V M;  5DM7 1;  4AR6 A;  4JAF A;  5M5X L;  3HJW B;  1R9T L;  3M4O L;  1SMM A;  2LCQ A;  5IYC L;  3HOZ L;  4WFN 1;  5JVH 1;  3GTL L;  3WWL A;  2HR5 A;  5M3M L;  1TWF L;  5DM6 1;  1LTL A;  2XJP A;  2NVY L;  1SMW A;  2PVE A;  2ZIX A;  1RB9 A;  4GS7 D;  3HOU L;  3S15 L;  2NYD A;  4G6B A;  4BY1 L;  3MQK B;  2V0F A;  1B71 A;  3LWO B;  1I50 L;  2EY4 E;  3NFP I;  2M6P A;  4BXX L;  1T9O A;  1BQ8 A; 
#chains in the Genus database with same CATH homology
 2ERS A;  3J7Y 1;  1S2Z A;  5MFZ A;  2J9U B;  2XJV A;  1B2J A;  3PZA A;  1BRF A;  2PVX A;  2KN9 A;  3PKI A;  3QQC E;  5GAE c;  5MF6 A;  2C6B A;  1IRN A;  3VPB E;  1B13 A;  3RYG A;  1IRO A;  1LKO A;  3KYV A;  2KKD A;  3PIP 1;  3B08 B;  4XGH A;  3QVD A;  1YK4 A;  1YUZ A;  4ZN1 B;  8RXN A;  1IU6 A;  1BQ9 A;  1C09 A;  1IW7 D;  2PSM C;  4YWM A;  3RZ6 A;  4AHX A;  2H12 A;  3J7Z 1;  4V19 6;  3WWN B;  1R0J A;  1DX8 A;  4XXB B;  4UY8 1;  2C6A A;  1NXE A;  2XJT A;  5AN9 H;  2JI3 A;  3IU3 I;  1FHM A;  1S24 A;  2ERJ A;  1VZH A;  2VL6 A;  4AI1 A;  5AI2 A;  1BE7 A;  3KYY A;  4K9F A;  4AR4 A;  1LKM A;  2QL0 A;  2PYA A;  2DSX A;  1BFY A;  1DVB A;  1NXG A;  2CR8 A;  5MFP A;  3P2A A;  2M4V A;  1CAA A;  2Z3Q B;  2MS3 A;  5K2M E;  4YWL A;  5EIO C;  1SMU A;  4AHY A;  2GMG A;  2CKA A;  4LHN A;  1R0I A;  2V0E A;  1R0F A;  4TVM A;  4AHZ A;  1B2O A;  1RYT A;  2XJR A;  4RXN A;  1R0G A;  4AI2 A;  1RWD A;  1NNQ A;  6RXN A;  4LHL A;  3MPS A;  4JAE A;  1Z92 B;  4ME3 A;  2PPT A;  3P8B A;  4U67 1;  2K2D A;  1RDG A;  5MLC 3;  4AI3 A;  4AHW A;  2L0Z A;  7RXN A;  4TPU A;  1IU5 A;  4POG A;  2XJS A;  4AR5 A;  4AI0 A;  5GAH c;  1FHH A;  1OWC A;  1RYQ A;  1YV1 A;  2Z3R B;  1H7V A;  3LPE B;  5GAG c;  2JI1 A;  2JI2 A;  2A68 D;  2AYJ A;  2V3B B;  1T9P A;  5DM7 1;  1VZI A;  3KYU A;  4AR6 A;  1RDV A;  4JAF A;  3LNL A;  1SMM A;  4AR3 A;  3K35 A;  3A44 A;  2LCQ A;  5GAD c;  2BE5 D;  5EIN C;  2B5I D;  3PKJ A;  1VZG A;  4JAG A;  1WJV A;  4WFN 1;  5AI3 A;  3B0A B;  1R0H A;  5RXN A;  5JVH 1;  2CKC A;  3WWL A;  2HR5 A;  2XJU A;  1E8J A;  2A6H D;  1ODH A;  5DM6 1;  1LTL A;  1QYB A;  2XJP A;  2A69 D;  1SMW A;  2A6E D;  2PVE A;  1T9Q A;  2ZIX A;  1VCX A;  1RB9 A;  1YUX A;  3MSU A;  3PWF A;  4GS7 D;  2RDV A;  2NYD A;  3ZG6 A;  4E6Y A;  2M6O A;  4ZN3 B;  1LKP A;  4G6B A;  3SS2 A;  1S30 A;  2M4Y A;  5MGN A;  4B8C D;  1YK5 A;  2V0F A;  1B71 A;  5JVG 1;  3PIO 1;  4JAD A;  1OWB A;  3KYX A;  1QCV A;  1CAD A;  3NFP I;  2M6P A;  2XJQ A;  1ZRP A;  1T9O A;  1BQ8 A;  1JYB A;  3KYW A;  5IY0 A;  3RZT A;  2O5J D;  4POF A;  5H1S c; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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