4RXNA

Crystallographic refinement of rubredoxin at 1.2 angstroms resolution
Total Genus 8
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
8
sequence length
54
structure length
54
Chain Sequence
MKKYTCTVCGYIYDPEDGDPDDGVNPGTDFKDIPDDWVCPLCGVGKDEFEEVEE
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Electron transfer(iron-sulfur protein)
source organism Clostridium pasteurianum
publication title Crystallographic refinement of rubredoxin at 1 x 2 A degrees resolution.
pubmed doi rcsb
molecule keywords RUBREDOXIN
total genus 8
structure length 54
sequence length 54
ec nomenclature
pdb deposition date 1984-10-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00301 Rubredoxin Rubredoxin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.20.28.10 Mainly Beta Single Sheet Rubrerythrin, domain 2 Rubrerythrin, domain 2 4rxnA00
4ME3A 1VCXA 1CAAA 1QYBA 1B2JA 1RDVA 5IY0A 4RXNA 1YUXA 1FHHA 2DSXA 4POFA 7RXNA 3KYUA 1RWDA 1R0FA 2KN9A 4AR5A 1ZRPA 2K2DA 1SMWA 1R0IA 1R0JA 2KKDA 4YWLA 4AR6A 3KYVA 1RDGA 1RYTA 2MS3A 1B71A 1E8JA 1IRNA 1C09A 1QCVA 3RZ6A 1YUZA 1CADA 1YV1A 1DVBA 4YWMA 3KYWA 1RB9A 1BQ9A 3RZTA 3MPSA 5AI2A 1R0GA 2M4YA 6RXNA 2PVEA 3RYGA 2VL6A 1T9QA 1LKMA 2GMGA 1BE7A 1T9PA 1BFYA 1H7VA 1S24A 1T9OA 4K9FA 1LKPA 1R0HA 1S2ZA 1YK5A 1S30A 1BQ8A 2QL0A 1IU6A 4AR3A 1DX8A 2HR5A 3PZAA 3A44A 1IU5A 1B13A 1FHMA 1BRFA 1NNQA 4TPUA 2V3BB 1SMUA 2RDVA 4AR4A 1JYBA 1YK4A 3PWFA 1LTLA 8RXNA 3KYYA 2LCQA 1B2OA 2PYAA 4POGA 2PVXA 3SS2A 1SMMA 5RXNA 3QVDA 1LKOA 3KYXA 5AI3A 1IROA
chains in the Genus database with same CATH superfamily
2L0ZA 4BY7L 3HOXL 2C6AA 1QYBA 4X6AL 1RDVA 4C3JL 2NVYL 2PMZP 4BBSL 1TWFL 1OWCA 2APOB 1YUXA 2DSXA 2C6BA 1RWDA 1R0FA 5IYCL 1R0IA 5M5YL 4YWLA 5M3ML 4A3KL 4AR6A 5EIOC 1RYTA 5C4XL 2AQCA 3RZ6A 2A6ED 1CADA 4A3FL 1DVBA 4AHXA 2CR8A 2JI1A 3S14L 4AHWA 3RZDL 3HOZL 3MPSA 3LWOB 6RXNA 2ERJA 2VL6A 3M4OL 2B5ID 2GMGA 1OWBA 1H7VA 1TWHL 3HOUL 1VZIA 1YK5A 3VPBE 3H3VM 3K35A 2AYJA 3GTLL 3PKJA 1VZHA 4XGHA 4JADA 1K83L 2HR5A 2B63L 2NYDA 3H97A 3H99A 4BXXL 4XXBB 5M5WL 2XJTA 2R93L 4AR4A 3PWFA 1LTLA 4V196 1TWAL 5FJ8L 3S1QL 5MGNA 1PFYA 4AHYA 3QVDA 3LPEB 4QIWP 2JI2A 4ME3A 4WFN1 4RXNA 3LNLA 1Y1WL 3H9BA 5JVH1 2RFKB 4POFA 3S1ML 2E2JL 7RXNA 3HOYL 1NXEA 2KN9A 2E2IL 5FLML 4G6BA 5IP7L 5C4JL 5C3EL 1SMWA 4C3IL 2KKDA 1RDGA 5MLC3 4A3ML 5DM61 2NVXL 3LWRB 2A6HD 2M6OA 1TWGL 2XJQA 4GS7D 2JA6L 4YWMA 5IP9L 3MSUA 3GTJL 3KYWA 2Z3RB 1Y1VL 2EY4E 4A3JL 5M3FL 2PVEA 4B8CD 5IYBL 2XJUA 1LKMA 4A3IL 2YU9L 3GTQL 2JA5L 1IW7D 5H1Sc 2WB1P 1TWCL 1P7PA 2XJVA 1PFWA 4AR3A 5GADc 3WWNB 1IU5A 4C2M1 2VUML 1JYBA 4A3CL 8RXNA 1B2OA 1Z92B 5AN9H 2A69D 4Y7NL 3ZG6A 2A68D 1LKOA 3KYXA 2ERSA 4AI0A 2R7ZL 2CKCA 4A3BL 1VCXA 4A3DL 3B08B 3FDJA 5M5XL 3FKIL 4ZN3B 5IY0A 3PIP1 1FHHA 2J9UB 3KYUA 3P8BA 4AR5A 3WWLA 1ZRPA 4LHNA 1R0JA 1WCML 2V0FA 5MF6A 3S1NL 4JAFA 3H9CA 1IRNA 3LWPB 1YUZA 5IYDL 2NVQL 4A3GL 3HJWB 5C44L 2HVYC 2E2HL 1BQ9A 3RZTA 5AI2A 3S15L 5JVG1 2XJPA 1T9QA 3PIO1 5GAHc 4AYBP 3K7AL 1BE7A 1T9PA 1S24A 1R0HA 1S2ZA 2M6PA 5GAGc 2XJSA 1S30A 1BQ8A 3S17L 1R9TL 2JA8L 3PO2L 4AI3A 1I50L 2WAQP 1DX8A 2M4VA 1ODHA 3PZAA 3A44A 1B13A 4ZN1B 4UY81 3S2HL 1SMUA 3GTPL 3RZOL 4U671 4AI1A 2RDVA 4LHLA 1YK4A 1NXGA 4A3LL 2PYAA 3I4NL 4POGA 2PVXA 1WJVA 3HOVL 5MFPA 1PZXA 3SS2A 3GTOL 3HAXC 5DM71 3HKZP 2CKAA 3H0GL 1IROA 4JAGA 2XJRA 3I4ML 2AUSB 1CAAA 2Z3QB 1B2JA 2PPTA 3PKIA 1RYQA 1I3QL 4JAEA 1VZGA 3P2AA 4BBRL 2K2DA 4A93L 1PFUA 3J7Z1 3LWQB 2PSMC 4AHZA 3GTML 3KYVA 3HOWL 2MS3A 3GTKL 1B71A 1E8JA 1QQTA 3HJYB 4Y52L 1C09A 1QCVA 3QQCE 3S16L 4TVMA 4A3EL 1YV1A 2JA7L 3S2DL 4E6YA 3MQKB 1RB9A 3JR7A 1F4LA 3PO3L 2JI3A 1R0GA 2ZIXA 2M4YA 3RYGA 1SFOL 3PL5A 1BFYA 5GAEc 1T9OA 4K9FA 1LKPA 3B0AB 2R92L 3J7Y1 2QL0A 3CQZL 1IU6A 2Y0SP 1I6HL 2O5JD 2H12A 3GTGL 3LWVB 1FHMA 1BRFA 1NNQA 4TPUA 2V3BB 3NFPI 4AI2A 2NVTL 5EINC 3KYYA 2LCQA 4C3HL 2V0EA 2BE5D 1PFVA 3S1RL 1SMMA 5RXNA 3M3YL 5AI3A 5K2ME 4BY1L 5MFZA 3IU3I
chains in the Genus database with same CATH topology
4ME3A 2L0ZA 1VCXA 4JAGA 3B08B 2XJRA 2C6AA 4ZN3B 1CAAA 1QYBA 2Z3QB 1B2JA 1RDVA 2PPTA 4WFN1 3PKIA 5IY0A 4RXNA 1OWCA 1RYQA 3PIP1 1YUXA 3LNLA 1FHHA 2DSXA 5JVH1 2J9UB 2C6BA 4POFA 4JAEA 1VZGA 3P2AA 3KYUA 1NXEA 7RXNA 1RWDA 3P8BA 1R0FA 2KN9A 3WWLA 4AR5A 1ZRPA 4G6BA 2K2DA 3J7Z1 1SMWA 1R0IA 2PSMC 4AHZA 4LHNA 1R0JA 2V0FA 2KKDA 4YWLA 4AR6A 3KYVA 1RDGA 5EIOC 5MF6A 5MLC3 4JAFA 1RYTA 2MS3A 5DM61 1B71A 1E8JA 1IRNA 2A6HD 2M6OA 1C09A 1QCVA 3RZ6A 2XJQA 2A6ED 3QQCE 1YUZA 1CADA 4TVMA 4GS7D 1YV1A 1DVBA 4YWMA 4AHXA 2CR8A 2JI1A 4E6YA 3MSUA 3KYWA 4AHWA 1RB9A 2Z3RB 1BQ9A 3RZTA 2JI3A 3MPSA 5AI2A 1R0GA 2ZIXA 2M4YA 5JVG1 2XJPA 6RXNA 2ERJA 2PVEA 3RYGA 4B8CD 2VL6A 1T9QA 3PIO1 2XJUA 2B5ID 5GAHc 1LKMA 2GMGA 1OWBA 1BE7A 1T9PA 1BFYA 5GAEc 1H7VA 1S24A 1T9OA 4K9FA 1LKPA 1R0HA 1S2ZA 2M6PA 1VZIA 5GAGc 3B0AB 2XJSA 1YK5A 1S30A 1IW7D 3J7Y1 1BQ8A 3VPBE 5H1Sc 2QL0A 3K35A 2AYJA 1IU6A 2O5JD 3PKJA 1VZHA 4AI3A 4XGHA 2H12A 2XJVA 4AR3A 4JADA 5GADc 1DX8A 2M4VA 2HR5A 3WWNB 1ODHA 2NYDA 3PZAA 3A44A 1IU5A 4XXBB 1B13A 4ZN1B 1FHMA 4UY81 1BRFA 1NNQA 2XJTA 4TPUA 2V3BB 3NFPI 1SMUA 4U671 4AI1A 2RDVA 4LHLA 4AI2A 1JYBA 1YK4A 3PWFA 4AR4A 1LTLA 1NXGA 4V196 5EINC 8RXNA 3KYYA 2LCQA 1B2OA 2PYAA 2V0EA 4POGA 2PVXA 1WJVA 1Z92B 2BE5D 5MGNA 5AN9H 5MFPA 2A69D 1SMMA 3SS2A 4AHYA 3QVDA 3ZG6A 5RXNA 2A68D 3LPEB 1LKOA 3KYXA 5DM71 2CKAA 2ERSA 5AI3A 4AI0A 1IROA 2CKCA 5K2ME 2JI2A 5MFZA 3IU3I
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4ME3 A;  1VCX A;  1CAA A;  1QYB A;  1B2J A;  1RDV A;  5IY0 A;  4RXN A;  1YUX A;  1FHH A;  2DSX A;  4POF A;  7RXN A;  3KYU A;  1RWD A;  1R0F A;  2KN9 A;  4AR5 A;  1ZRP A;  2K2D A;  1SMW A;  1R0I A;  1R0J A;  2KKD A;  4YWL A;  4AR6 A;  3KYV A;  1RDG A;  1RYT A;  2MS3 A;  1B71 A;  1E8J A;  1IRN A;  1C09 A;  1QCV A;  3RZ6 A;  1YUZ A;  1CAD A;  1YV1 A;  1DVB A;  4YWM A;  3KYW A;  1RB9 A;  1BQ9 A;  3RZT A;  3MPS A;  5AI2 A;  1R0G A;  2M4Y A;  6RXN A;  2PVE A;  3RYG A;  2VL6 A;  1T9Q A;  1LKM A;  2GMG A;  1BE7 A;  1T9P A;  1BFY A;  1H7V A;  1S24 A;  1T9O A;  4K9F A;  1LKP A;  1R0H A;  1S2Z A;  1YK5 A;  1S30 A;  1BQ8 A;  2QL0 A;  1IU6 A;  4AR3 A;  1DX8 A;  2HR5 A;  3PZA A;  3A44 A;  1IU5 A;  1B13 A;  1FHM A;  1BRF A;  1NNQ A;  4TPU A;  2V3B B;  1SMU A;  2RDV A;  4AR4 A;  1JYB A;  1YK4 A;  3PWF A;  1LTL A;  8RXN A;  3KYY A;  2LCQ A;  1B2O A;  2PYA A;  4POG A;  2PVX A;  3SS2 A;  1SMM A;  5RXN A;  3QVD A;  1LKO A;  3KYX A;  5AI3 A;  1IRO A; 
#chains in the Genus database with same CATH topology
 2L0Z A;  4BY7 L;  3HOX L;  2C6A A;  1QYB A;  4X6A L;  1RDV A;  4C3J L;  2NVY L;  2PMZ P;  4BBS L;  1TWF L;  1OWC A;  2APO B;  1YUX A;  2DSX A;  2C6B A;  1RWD A;  1R0F A;  5IYC L;  1R0I A;  5M5Y L;  4YWL A;  5M3M L;  4A3K L;  4AR6 A;  5EIO C;  1RYT A;  5C4X L;  2AQC A;  3RZ6 A;  2A6E D;  1CAD A;  4A3F L;  1DVB A;  4AHX A;  2CR8 A;  2JI1 A;  3S14 L;  4AHW A;  3RZD L;  3HOZ L;  3MPS A;  3LWO B;  6RXN A;  2ERJ A;  2VL6 A;  3M4O L;  2B5I D;  2GMG A;  1OWB A;  1H7V A;  1TWH L;  3HOU L;  1VZI A;  1YK5 A;  3VPB E;  3H3V M;  3K35 A;  2AYJ A;  3GTL L;  3PKJ A;  1VZH A;  4XGH A;  4JAD A;  1K83 L;  2HR5 A;  2B63 L;  2NYD A;  3H97 A;  3H99 A;  4BXX L;  4XXB B;  5M5W L;  2XJT A;  2R93 L;  4AR4 A;  3PWF A;  1LTL A;  4V19 6;  1TWA L;  5FJ8 L;  3S1Q L;  5MGN A;  1PFY A;  4AHY A;  3QVD A;  3LPE B;  4QIW P;  2JI2 A;  4ME3 A;  4WFN 1;  4RXN A;  3LNL A;  1Y1W L;  3H9B A;  5JVH 1;  2RFK B;  4POF A;  3S1M L;  2E2J L;  7RXN A;  3HOY L;  1NXE A;  2KN9 A;  2E2I L;  5FLM L;  4G6B A;  5IP7 L;  5C4J L;  5C3E L;  1SMW A;  4C3I L;  2KKD A;  1RDG A;  5MLC 3;  4A3M L;  5DM6 1;  2NVX L;  3LWR B;  2A6H D;  2M6O A;  1TWG L;  2XJQ A;  4GS7 D;  2JA6 L;  4YWM A;  5IP9 L;  3MSU A;  3GTJ L;  3KYW A;  2Z3R B;  1Y1V L;  2EY4 E;  4A3J L;  5M3F L;  2PVE A;  4B8C D;  5IYB L;  2XJU A;  1LKM A;  4A3I L;  2YU9 L;  3GTQ L;  2JA5 L;  1IW7 D;  5H1S c;  2WB1 P;  1TWC L;  1P7P A;  2XJV A;  1PFW A;  4AR3 A;  5GAD c;  3WWN B;  1IU5 A;  4C2M 1;  2VUM L;  1JYB A;  4A3C L;  8RXN A;  1B2O A;  1Z92 B;  5AN9 H;  2A69 D;  4Y7N L;  3ZG6 A;  2A68 D;  1LKO A;  3KYX A;  2ERS A;  4AI0 A;  2R7Z L;  2CKC A;  4A3B L;  1VCX A;  4A3D L;  3B08 B;  3FDJ A;  5M5X L;  3FKI L;  4ZN3 B;  5IY0 A;  3PIP 1;  1FHH A;  2J9U B;  3KYU A;  3P8B A;  4AR5 A;  3WWL A;  1ZRP A;  4LHN A;  1R0J A;  1WCM L;  2V0F A;  5MF6 A;  3S1N L;  4JAF A;  3H9C A;  1IRN A;  3LWP B;  1YUZ A;  5IYD L;  2NVQ L;  4A3G L;  3HJW B;  5C44 L;  2HVY C;  2E2H L;  1BQ9 A;  3RZT A;  5AI2 A;  3S15 L;  5JVG 1;  2XJP A;  1T9Q A;  3PIO 1;  5GAH c;  4AYB P;  3K7A L;  1BE7 A;  1T9P A;  1S24 A;  1R0H A;  1S2Z A;  2M6P A;  5GAG c;  2XJS A;  1S30 A;  1BQ8 A;  3S17 L;  1R9T L;  2JA8 L;  3PO2 L;  4AI3 A;  1I50 L;  2WAQ P;  1DX8 A;  2M4V A;  1ODH A;  3PZA A;  3A44 A;  1B13 A;  4ZN1 B;  4UY8 1;  3S2H L;  1SMU A;  3GTP L;  3RZO L;  4U67 1;  4AI1 A;  2RDV A;  4LHL A;  1YK4 A;  1NXG A;  4A3L L;  2PYA A;  3I4N L;  4POG A;  2PVX A;  1WJV A;  3HOV L;  5MFP A;  1PZX A;  3SS2 A;  3GTO L;  3HAX C;  5DM7 1;  3HKZ P;  2CKA A;  3H0G L;  1IRO A;  4JAG A;  2XJR A;  3I4M L;  2AUS B;  1CAA A;  2Z3Q B;  1B2J A;  2PPT A;  3PKI A;  1RYQ A;  1I3Q L;  4JAE A;  1VZG A;  3P2A A;  4BBR L;  2K2D A;  4A93 L;  1PFU A;  3J7Z 1;  3LWQ B;  2PSM C;  4AHZ A;  3GTM L;  3KYV A;  3HOW L;  2MS3 A;  3GTK L;  1B71 A;  1E8J A;  1QQT A;  3HJY B;  4Y52 L;  1C09 A;  1QCV A;  3QQC E;  3S16 L;  4TVM A;  4A3E L;  1YV1 A;  2JA7 L;  3S2D L;  4E6Y A;  3MQK B;  1RB9 A;  3JR7 A;  1F4L A;  3PO3 L;  2JI3 A;  1R0G A;  2ZIX A;  2M4Y A;  3RYG A;  1SFO L;  3PL5 A;  1BFY A;  5GAE c;  1T9O A;  4K9F A;  1LKP A;  3B0A B;  2R92 L;  3J7Y 1;  2QL0 A;  3CQZ L;  1IU6 A;  2Y0S P;  1I6H L;  2O5J D;  2H12 A;  3GTG L;  3LWV B;  1FHM A;  1BRF A;  1NNQ A;  4TPU A;  2V3B B;  3NFP I;  4AI2 A;  2NVT L;  5EIN C;  3KYY A;  2LCQ A;  4C3H L;  2V0E A;  2BE5 D;  1PFV A;  3S1R L;  1SMM A;  5RXN A;  3M3Y L;  5AI3 A;  5K2M E;  4BY1 L;  5MFZ A;  3IU3 I; 
#chains in the Genus database with same CATH homology
 4ME3 A;  2L0Z A;  1VCX A;  4JAG A;  3B08 B;  2XJR A;  2C6A A;  4ZN3 B;  1CAA A;  1QYB A;  2Z3Q B;  1B2J A;  1RDV A;  2PPT A;  4WFN 1;  3PKI A;  5IY0 A;  4RXN A;  1OWC A;  1RYQ A;  3PIP 1;  1YUX A;  3LNL A;  1FHH A;  2DSX A;  5JVH 1;  2J9U B;  2C6B A;  4POF A;  4JAE A;  1VZG A;  3P2A A;  3KYU A;  1NXE A;  7RXN A;  1RWD A;  3P8B A;  1R0F A;  2KN9 A;  3WWL A;  4AR5 A;  1ZRP A;  4G6B A;  2K2D A;  3J7Z 1;  1SMW A;  1R0I A;  2PSM C;  4AHZ A;  4LHN A;  1R0J A;  2V0F A;  2KKD A;  4YWL A;  4AR6 A;  3KYV A;  1RDG A;  5EIO C;  5MF6 A;  5MLC 3;  4JAF A;  1RYT A;  2MS3 A;  5DM6 1;  1B71 A;  1E8J A;  1IRN A;  2A6H D;  2M6O A;  1C09 A;  1QCV A;  3RZ6 A;  2XJQ A;  2A6E D;  3QQC E;  1YUZ A;  1CAD A;  4TVM A;  4GS7 D;  1YV1 A;  1DVB A;  4YWM A;  4AHX A;  2CR8 A;  2JI1 A;  4E6Y A;  3MSU A;  3KYW A;  4AHW A;  1RB9 A;  2Z3R B;  1BQ9 A;  3RZT A;  2JI3 A;  3MPS A;  5AI2 A;  1R0G A;  2ZIX A;  2M4Y A;  5JVG 1;  2XJP A;  6RXN A;  2ERJ A;  2PVE A;  3RYG A;  4B8C D;  2VL6 A;  1T9Q A;  3PIO 1;  2XJU A;  2B5I D;  5GAH c;  1LKM A;  2GMG A;  1OWB A;  1BE7 A;  1T9P A;  1BFY A;  5GAE c;  1H7V A;  1S24 A;  1T9O A;  4K9F A;  1LKP A;  1R0H A;  1S2Z A;  2M6P A;  1VZI A;  5GAG c;  3B0A B;  2XJS A;  1YK5 A;  1S30 A;  1IW7 D;  3J7Y 1;  1BQ8 A;  3VPB E;  5H1S c;  2QL0 A;  3K35 A;  2AYJ A;  1IU6 A;  2O5J D;  3PKJ A;  1VZH A;  4AI3 A;  4XGH A;  2H12 A;  2XJV A;  4AR3 A;  4JAD A;  5GAD c;  1DX8 A;  2M4V A;  2HR5 A;  3WWN B;  1ODH A;  2NYD A;  3PZA A;  3A44 A;  1IU5 A;  4XXB B;  1B13 A;  4ZN1 B;  1FHM A;  4UY8 1;  1BRF A;  1NNQ A;  2XJT A;  4TPU A;  2V3B B;  3NFP I;  1SMU A;  4U67 1;  4AI1 A;  2RDV A;  4LHL A;  4AI2 A;  1JYB A;  1YK4 A;  3PWF A;  4AR4 A;  1LTL A;  1NXG A;  4V19 6;  5EIN C;  8RXN A;  3KYY A;  2LCQ A;  1B2O A;  2PYA A;  2V0E A;  4POG A;  2PVX A;  1WJV A;  1Z92 B;  2BE5 D;  5MGN A;  5AN9 H;  5MFP A;  2A69 D;  1SMM A;  3SS2 A;  4AHY A;  3QVD A;  3ZG6 A;  5RXN A;  2A68 D;  3LPE B;  1LKO A;  3KYX A;  5DM7 1;  2CKA A;  2ERS A;  5AI3 A;  4AI0 A;  1IRO A;  2CKC A;  5K2M E;  2JI2 A;  5MFZ A;  3IU3 I; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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