4U671

Crystal structure of the large ribosomal subunit (50s) of deinococcus radiodurans containing a three residue insertion in l22
Total Genus 3
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
3
sequence length
53
structure length
53
Chain Sequence
AKDGPRIIVKMESSAGTGFYYTTTKNRRNTQAKLELKKYDPVAKKHVVFREKK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome
publication title The Ribosomal Protein uL22 Modulates the Shape of the Protein Exit Tunnel.
pubmed doi rcsb
molecule keywords 50S ribosomal protein L2
total genus 3
structure length 53
sequence length 53
ec nomenclature
pdb deposition date 2014-07-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
1 PF00471 Ribosomal_L33 Ribosomal protein L33
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.20.28.120 Mainly Beta Single Sheet Rubrerythrin, domain 2 Rubrerythrin, domain 2 4u67100
3J7Y1 4UY81 4V196 5GAGc 5JVH1 5DM71 5GAEc 3PIP1 5GAHc 5GADc 5H1Sc 4WFN1 3J7Z1 5DM61 3PIO1 5MLC3 4U671 5JVG1
chains in the Genus database with same CATH superfamily
5GAGc 4A3GL 1RYQA 4Y52L 5AI3A 2GMGA 1LKMA 1T9QA 2V3BB 5H1Sc 5JVG1 2JI1A 4AR4A 4A3CL 1SMUA 3PKJA 4A3IL 1Y1WL 3HOYL 1PFYA 1FHMA 1CAAA 1IU6A 3LWRB 1NXEA 1PFWA 3K7AL 1YUZA 2J9UB 1R0GA 1YK4A 3RZOL 3LWPB 4BBSL 1TWCL 2PYAA 3GTGL 1SFOL 3S1ML 1RDVA 2APOB 2AQCA 3GTLL 4AYBP 1F4LA 3RZDL 1VZIA 3WWNB 2C6AA 1R9TL 4LHLA 2E2HL 4JAGA 1NXGA 5MFZA 2A6ED 1FHHA 2XJVA 5C4XL 3S16L 2A68D 3KYUA 4B8CD 3HJWB 5K2ME 3GTKL 2NYDA 1BE7A 2Z3QB 5IP7L 1CADA 4A3KL 4A3EL 5C44L 3H97A 1TWAL 4YWMA 5GAHc 1LTLA 5DM61 2EY4E 4TPUA 1P7PA 5MFPA 3NFPI 2PMZP 3S15L 1R0HA 1R0JA 2CR8A 4BY1L 5C4JL 3H0GL 3PO3L 4A3ML 6RXNA 1QQTA 2WB1P 3S2DL 5RXNA 2E2IL 4UY81 3HOXL 3RZTA 3LWOB 3VPBE 3LWQB 2A6HD 2QL0A 2K2DA 2V0EA 5EIOC 3KYXA 1DVBA 3JR7A 1I6HL 3B0AB 2A69D 2PVXA 2HVYC 1YV1A 3S14L 3IU3I 2JA6L 4BXXL 5IYDL 3PKIA 2HR5A 2ZIXA 2AUSB 4C3IL 2B5ID 3RYGA 5MGNA 5AI2A 3HOWL 2LCQA 3S17L 3QVDA 1I50L 2H12A 4A3DL 4XGHA 2L0ZA 4POFA 4C3HL 2CKCA 3HOZL 1PFUA 2VUML 3LPEB 1R0IA 2KN9A 1IROA 3PO2L 1B71A 1T9PA 4AR6A 3M4OL 4QIWP 5AN9H 1SMWA 4A3BL 3FKIL 1WJVA 3HKZP 1VCXA 3WWLA 3H9CA 2JI2A 4YWLA 3H99A 2NVXL 3PZAA 1C09A 3HOUL 4AI1A 5M5YL 2YU9L 1ODHA 1TWFL 8RXNA 3S1NL 4AI2A 4C2M1 1OWBA 2RDVA 2XJPA 4U671 5EINC 2XJTA 3K35A 5JVH1 3H9BA 5M3ML 1VZHA 4WFN1 1DX8A 2DSXA 1YK5A 1BQ8A 2XJUA 1NNQA 5M5WL 5M3FL 5IY0A 1B2JA 1YUXA 4AR3A 1IRNA 2PVEA 3S1RL 5GADc 5IYBL 3S2HL 1ZRPA 4XXBB 2M4VA 3H3VM 2JA5L 3GTML 3S1QL 2R93L 1B2OA 4A3JL 1RB9A 4A3FL 4JAEA 1R0FA 3FDJA 1RDGA 2XJRA 3GTOL 3QQCE 3LNLA 2Y0SP 2NVYL 1RYTA 4ZN1B 3MPSA 3HJYB 1VZGA 3ZG6A 3J7Y1 4AI3A 1BFYA 3B08B 4JAFA 4AI0A 4JADA 3KYWA 5DM71 2WAQP 2VL6A 2R92L 1I3QL 3GTPL 2KKDA 4AR5A 3PL5A 2R7ZL 3HOVL 2ERJA 4A93L 2JI3A 1QCVA 1S30A 2M6OA 4GS7D 4AHXA 1B13A 2V0FA 4E6YA 1IW7D 1TWGL 4G6BA 2M4YA 5C3EL 2MS3A 1PZXA 4ZN3B 1Z92B 1WCML 1RWDA 2PPTA 3J7Z1 1JYBA 2AYJA 4AHZA 4BY7L 4ME3A 1LKOA 1BQ9A 5M5XL 2XJSA 5FLML 1QYBA 4K9FA 2XJQA 1Y1VL 2BE5D 4A3LL 5MF6A 4AHWA 3KYVA 1OWCA 1T9OA 4LHNA 2CKAA 2C6BA 3GTJL 3PWFA 1S2ZA 2NVQL 2PSMC 3CQZL 3KYYA 4AHYA 3MSUA 3P8BA 4BBRL 5IYCL 1PFVA 3GTQL 3RZ6A 1BRFA 4RXNA 1E8JA 4Y7NL 4TVMA 2NVTL 2JA8L 5GAEc 3HAXC 3SS2A 4V196 5IP9L 5FJ8L 4C3JL 2O5JD 3PIP1 1TWHL 2ERSA 7RXNA 3P2AA 3PIO1 3LWVB 3M3YL 2B63L 2JA7L 5MLC3 2Z3RB 3MQKB 4POGA 1H7VA 1SMMA 1LKPA 3I4NL 2E2JL 3I4ML 2RFKB 3A44A 1K83L 1IU5A 2M6PA 4X6AL 1S24A
chains in the Genus database with same CATH topology
5GAGc 6RXNA 4AI2A 2MS3A 1OWBA 2RDVA 2XJPA 4ZN3B 1RYQA 5RXNA 4U671 5EINC 1Z92B 2XJTA 4UY81 5AI3A 3K35A 5JVH1 1RWDA 2GMGA 3RZTA 2PPTA 1VZHA 4WFN1 3J7Z1 1DX8A 2DSXA 1JYBA 1YK5A 1LKMA 2AYJA 3VPBE 4AHZA 1T9QA 4ME3A 1LKOA 2A6HD 2V3BB 1BQ9A 1BQ8A 5H1Sc 2QL0A 2XJUA 1NNQA 2K2DA 2XJSA 1QYBA 1B2JA 1YUXA 2V0EA 4K9FA 2XJQA 5EIOC 2JI1A 3KYXA 1DVBA 4AR4A 2BE5D 1IRNA 1SMUA 4AR3A 2PVEA 3PKJA 1FHMA 5MF6A 1CAAA 3B0AB 4AHWA 3KYVA 5JVG1 1IU6A 5GADc 1OWCA 2A69D 2PVXA 1NXEA 1T9OA 1YUZA 1ZRPA 2J9UB 1R0GA 1YK4A 1YV1A 4XXBB 2M4VA 4LHNA 2CKAA 2C6BA 2PYAA 1B2OA 3IU3I 3PWFA 1RDVA 1RB9A 1S2ZA 3PKIA 2HR5A 2ZIXA 4JAEA 2PSMC 3KYYA 4AHYA 3MSUA 1VZIA 3P8BA 3WWNB 2C6AA 2B5ID 4LHLA 1R0FA 3RYGA 5MGNA 4JAGA 1NXGA 1RDGA 2XJRA 5AI2A 5MFZA 2A6ED 3RZ6A 1FHHA 2LCQA 1BRFA 4RXNA 1E8JA 2XJVA 2H12A 3QVDA 4TVMA 3QQCE 2A68D 3KYUA 3LNLA 5GAEc 4XGHA 2L0ZA 1RYTA 4ZN1B 4B8CD 3MPSA 3SS2A 1VZGA 3ZG6A 5K2ME 4AI3A 4POFA 3J7Y1 2NYDA 4V196 1BFYA 3B08B 1BE7A 4JAFA 2CKCA 2Z3QB 4AI0A 1CADA 4JADA 2O5JD 3LPEB 1R0IA 3KYWA 5DM71 3PIP1 2KN9A 2ERSA 7RXNA 1IROA 4YWMA 3P2AA 1B71A 1T9PA 2VL6A 3PIO1 4AR6A 2KKDA 4AR5A 5GAHc 1LTLA 5AN9H 2ERJA 5DM61 1SMWA 5MLC3 5IY0A 2Z3RB 4TPUA 1H7VA 4POGA 1SMMA 5MFPA 3NFPI 1WJVA 2JI3A 1LKPA 1QCVA 1S30A 2M6OA 1VCXA 4GS7D 3WWLA 4AHXA 1B13A 1R0HA 2JI2A 4YWLA 3A44A 3PZAA 2V0FA 1C09A 1R0JA 4E6YA 2CR8A 1IU5A 4AI1A 2M6PA 1IW7D 4G6BA 1ODHA 1S24A 2M4YA 8RXNA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3J7Y 1;  4UY8 1;  4V19 6;  5GAG c;  5JVH 1;  5DM7 1;  5GAE c;  3PIP 1;  5GAH c;  5GAD c;  5H1S c;  4WFN 1;  3J7Z 1;  5DM6 1;  3PIO 1;  5MLC 3;  4U67 1;  5JVG 1; 
#chains in the Genus database with same CATH topology
 5GAG c;  4A3G L;  1RYQ A;  4Y52 L;  5AI3 A;  2GMG A;  1LKM A;  1T9Q A;  2V3B B;  5H1S c;  5JVG 1;  2JI1 A;  4AR4 A;  4A3C L;  1SMU A;  3PKJ A;  4A3I L;  1Y1W L;  3HOY L;  1PFY A;  1FHM A;  1CAA A;  1IU6 A;  3LWR B;  1NXE A;  1PFW A;  3K7A L;  1YUZ A;  2J9U B;  1R0G A;  1YK4 A;  3RZO L;  3LWP B;  4BBS L;  1TWC L;  2PYA A;  3GTG L;  1SFO L;  3S1M L;  1RDV A;  2APO B;  2AQC A;  3GTL L;  4AYB P;  1F4L A;  3RZD L;  1VZI A;  3WWN B;  2C6A A;  1R9T L;  4LHL A;  2E2H L;  4JAG A;  1NXG A;  5MFZ A;  2A6E D;  1FHH A;  2XJV A;  5C4X L;  3S16 L;  2A68 D;  3KYU A;  4B8C D;  3HJW B;  5K2M E;  3GTK L;  2NYD A;  1BE7 A;  2Z3Q B;  5IP7 L;  1CAD A;  4A3K L;  4A3E L;  5C44 L;  3H97 A;  1TWA L;  4YWM A;  5GAH c;  1LTL A;  5DM6 1;  2EY4 E;  4TPU A;  1P7P A;  5MFP A;  3NFP I;  2PMZ P;  3S15 L;  1R0H A;  1R0J A;  2CR8 A;  4BY1 L;  5C4J L;  3H0G L;  3PO3 L;  4A3M L;  6RXN A;  1QQT A;  2WB1 P;  3S2D L;  5RXN A;  2E2I L;  4UY8 1;  3HOX L;  3RZT A;  3LWO B;  3VPB E;  3LWQ B;  2A6H D;  2QL0 A;  2K2D A;  2V0E A;  5EIO C;  3KYX A;  1DVB A;  3JR7 A;  1I6H L;  3B0A B;  2A69 D;  2PVX A;  2HVY C;  1YV1 A;  3S14 L;  3IU3 I;  2JA6 L;  4BXX L;  5IYD L;  3PKI A;  2HR5 A;  2ZIX A;  2AUS B;  4C3I L;  2B5I D;  3RYG A;  5MGN A;  5AI2 A;  3HOW L;  2LCQ A;  3S17 L;  3QVD A;  1I50 L;  2H12 A;  4A3D L;  4XGH A;  2L0Z A;  4POF A;  4C3H L;  2CKC A;  3HOZ L;  1PFU A;  2VUM L;  3LPE B;  1R0I A;  2KN9 A;  1IRO A;  3PO2 L;  1B71 A;  1T9P A;  4AR6 A;  3M4O L;  4QIW P;  5AN9 H;  1SMW A;  4A3B L;  3FKI L;  1WJV A;  3HKZ P;  1VCX A;  3WWL A;  3H9C A;  2JI2 A;  4YWL A;  3H99 A;  2NVX L;  3PZA A;  1C09 A;  3HOU L;  4AI1 A;  5M5Y L;  2YU9 L;  1ODH A;  1TWF L;  8RXN A;  3S1N L;  4AI2 A;  4C2M 1;  1OWB A;  2RDV A;  2XJP A;  4U67 1;  5EIN C;  2XJT A;  3K35 A;  5JVH 1;  3H9B A;  5M3M L;  1VZH A;  4WFN 1;  1DX8 A;  2DSX A;  1YK5 A;  1BQ8 A;  2XJU A;  1NNQ A;  5M5W L;  5M3F L;  5IY0 A;  1B2J A;  1YUX A;  4AR3 A;  1IRN A;  2PVE A;  3S1R L;  5GAD c;  5IYB L;  3S2H L;  1ZRP A;  4XXB B;  2M4V A;  3H3V M;  2JA5 L;  3GTM L;  3S1Q L;  2R93 L;  1B2O A;  4A3J L;  1RB9 A;  4A3F L;  4JAE A;  1R0F A;  3FDJ A;  1RDG A;  2XJR A;  3GTO L;  3QQC E;  3LNL A;  2Y0S P;  2NVY L;  1RYT A;  4ZN1 B;  3MPS A;  3HJY B;  1VZG A;  3ZG6 A;  3J7Y 1;  4AI3 A;  1BFY A;  3B08 B;  4JAF A;  4AI0 A;  4JAD A;  3KYW A;  5DM7 1;  2WAQ P;  2VL6 A;  2R92 L;  1I3Q L;  3GTP L;  2KKD A;  4AR5 A;  3PL5 A;  2R7Z L;  3HOV L;  2ERJ A;  4A93 L;  2JI3 A;  1QCV A;  1S30 A;  2M6O A;  4GS7 D;  4AHX A;  1B13 A;  2V0F A;  4E6Y A;  1IW7 D;  1TWG L;  4G6B A;  2M4Y A;  5C3E L;  2MS3 A;  1PZX A;  4ZN3 B;  1Z92 B;  1WCM L;  1RWD A;  2PPT A;  3J7Z 1;  1JYB A;  2AYJ A;  4AHZ A;  4BY7 L;  4ME3 A;  1LKO A;  1BQ9 A;  5M5X L;  2XJS A;  5FLM L;  1QYB A;  4K9F A;  2XJQ A;  1Y1V L;  2BE5 D;  4A3L L;  5MF6 A;  4AHW A;  3KYV A;  1OWC A;  1T9O A;  4LHN A;  2CKA A;  2C6B A;  3GTJ L;  3PWF A;  1S2Z A;  2NVQ L;  2PSM C;  3CQZ L;  3KYY A;  4AHY A;  3MSU A;  3P8B A;  4BBR L;  5IYC L;  1PFV A;  3GTQ L;  3RZ6 A;  1BRF A;  4RXN A;  1E8J A;  4Y7N L;  4TVM A;  2NVT L;  2JA8 L;  5GAE c;  3HAX C;  3SS2 A;  4V19 6;  5IP9 L;  5FJ8 L;  4C3J L;  2O5J D;  3PIP 1;  1TWH L;  2ERS A;  7RXN A;  3P2A A;  3PIO 1;  3LWV B;  3M3Y L;  2B63 L;  2JA7 L;  5MLC 3;  2Z3R B;  3MQK B;  4POG A;  1H7V A;  1SMM A;  1LKP A;  3I4N L;  2E2J L;  3I4M L;  2RFK B;  3A44 A;  1K83 L;  1IU5 A;  2M6P A;  4X6A L;  1S24 A; 
#chains in the Genus database with same CATH homology
 5GAG c;  6RXN A;  4AI2 A;  2MS3 A;  1OWB A;  2RDV A;  2XJP A;  4ZN3 B;  1RYQ A;  5RXN A;  4U67 1;  5EIN C;  1Z92 B;  2XJT A;  4UY8 1;  5AI3 A;  3K35 A;  5JVH 1;  1RWD A;  2GMG A;  3RZT A;  2PPT A;  1VZH A;  4WFN 1;  3J7Z 1;  1DX8 A;  2DSX A;  1JYB A;  1YK5 A;  1LKM A;  2AYJ A;  3VPB E;  4AHZ A;  1T9Q A;  4ME3 A;  1LKO A;  2A6H D;  2V3B B;  1BQ9 A;  1BQ8 A;  5H1S c;  2QL0 A;  2XJU A;  1NNQ A;  2K2D A;  2XJS A;  1QYB A;  1B2J A;  1YUX A;  2V0E A;  4K9F A;  2XJQ A;  5EIO C;  2JI1 A;  3KYX A;  1DVB A;  4AR4 A;  2BE5 D;  1IRN A;  1SMU A;  4AR3 A;  2PVE A;  3PKJ A;  1FHM A;  5MF6 A;  1CAA A;  3B0A B;  4AHW A;  3KYV A;  5JVG 1;  1IU6 A;  5GAD c;  1OWC A;  2A69 D;  2PVX A;  1NXE A;  1T9O A;  1YUZ A;  1ZRP A;  2J9U B;  1R0G A;  1YK4 A;  1YV1 A;  4XXB B;  2M4V A;  4LHN A;  2CKA A;  2C6B A;  2PYA A;  1B2O A;  3IU3 I;  3PWF A;  1RDV A;  1RB9 A;  1S2Z A;  3PKI A;  2HR5 A;  2ZIX A;  4JAE A;  2PSM C;  3KYY A;  4AHY A;  3MSU A;  1VZI A;  3P8B A;  3WWN B;  2C6A A;  2B5I D;  4LHL A;  1R0F A;  3RYG A;  5MGN A;  4JAG A;  1NXG A;  1RDG A;  2XJR A;  5AI2 A;  5MFZ A;  2A6E D;  3RZ6 A;  1FHH A;  2LCQ A;  1BRF A;  4RXN A;  1E8J A;  2XJV A;  2H12 A;  3QVD A;  4TVM A;  3QQC E;  2A68 D;  3KYU A;  3LNL A;  5GAE c;  4XGH A;  2L0Z A;  1RYT A;  4ZN1 B;  4B8C D;  3MPS A;  3SS2 A;  1VZG A;  3ZG6 A;  5K2M E;  4AI3 A;  4POF A;  3J7Y 1;  2NYD A;  4V19 6;  1BFY A;  3B08 B;  1BE7 A;  4JAF A;  2CKC A;  2Z3Q B;  4AI0 A;  1CAD A;  4JAD A;  2O5J D;  3LPE B;  1R0I A;  3KYW A;  5DM7 1;  3PIP 1;  2KN9 A;  2ERS A;  7RXN A;  1IRO A;  4YWM A;  3P2A A;  1B71 A;  1T9P A;  2VL6 A;  3PIO 1;  4AR6 A;  2KKD A;  4AR5 A;  5GAH c;  1LTL A;  5AN9 H;  2ERJ A;  5DM6 1;  1SMW A;  5MLC 3;  5IY0 A;  2Z3R B;  4TPU A;  1H7V A;  4POG A;  1SMM A;  5MFP A;  3NFP I;  1WJV A;  2JI3 A;  1LKP A;  1QCV A;  1S30 A;  2M6O A;  1VCX A;  4GS7 D;  3WWL A;  4AHX A;  1B13 A;  1R0H A;  2JI2 A;  4YWL A;  3A44 A;  3PZA A;  2V0F A;  1C09 A;  1R0J A;  4E6Y A;  2CR8 A;  1IU5 A;  4AI1 A;  2M6P A;  1IW7 D;  4G6B A;  1ODH A;  1S24 A;  2M4Y A;  8RXN A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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