1BRFA

Rubredoxin (wild type) from pyrococcus furiosus
Total Genus 9

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
9
sequence length
53
structure length
53
Chain Sequence
AKWVCKICGYIYDEDAGDPDNGISPGTKFEELPDDWVCPICGAPKSEFEKLED

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
3H1 (14-16)EMPTYO1 (50-52)S1 (2-5)S2 (11-13)S3 (48-50)TI1 (6-9)3H4 (45-47)TIV1 (5-8)TII1 (24-27)3H3 (29-31)TI2 (33-36)TI3 (39-42)TIV2 (38-41)3H2 (19-21)Updating...
connected with : NaN
molecule tags Electron transport
publication title Crystal Structure of Rubredoxin from Pyrococcus Furiosus at 0.95 Angstroms Resolution, and the structures of N-terminal methionine and formylmethionine variants of Pf Rd. Contributions of N-terminal interactions to thermostability
pubmed rcsb
molecule keywords PROTEIN (RUBREDOXIN)
total genus 9
structure length 53
sequence length 53
ec nomenclature
pdb deposition date 1998-08-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00301 Rubredoxin Rubredoxin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.20.28.10 Mainly Beta Single Sheet Rubrerythrin, domain 2 Rubrerythrin, domain 2 1brfA00
4AR5A 1S30A 1YV1A 1DX8A 2MS3A 4YWMA 1IRNA 5IY0A 3KYUA 2LCQA 1C09A 5AI3A 1ZRPA 1SMUA 1YK5A 1IU6A 2PVXA 1R0JA 3MPSA 1T9OA 4RXNA 1BQ8A 1T9PA 4ME3A 1T9QA 1DVBA 1SMMA 1S24A 2HR5A 1RDGA 8RXNA 3KYWA 1B2JA 2V3BB 1B2OA 1CADA 1YUXA 1RWDA 1RB9A 1NNQA 4TPUA 1BE7A 2KN9A 4POGA 2GMGA 1E8JA 4AR6A 1R0GA 2RDVA 1BQ9A 1B71A 4YWLA 3PZAA 5AI2A 2DSXA 1YUZA 2M4YA 3SS2A 1FHMA 2QL0A 1YK4A 6RXNA 3RZTA 1JYBA 1R0FA 3A44A 2PVEA 1R0HA 3KYVA 7RXNA 1IU5A 1LTLA 1VCXA 3RYGA 5RXNA 1FHHA 1IROA 1SMWA 1RDVA 1QYBA 2KKDA 3PWFA 1CAAA 2VL6A 1H7VA 3QVDA 3RZ6A 1BFYA 1BRFA 1RYTA 3KYYA 1LKPA 1LKMA 4K9FA 1LKOA 4POFA 4AR3A 3KYXA 1QCVA 1R0IA 1S2ZA 4AR4A 2K2DA 1B13A 2PYAA
chains in the Genus database with same CATH superfamily
4AI1A 3GTKL 1PFYA 1DX8A 4YWMA 3QQCE 2NVQL 2JI2A 1YK5A 4AHZA 3RZDL 2B63L 3PIO1 3B08B 1I50L 3HJWB 3KYWA 2HVYC 5IYCL 4C2M1 2M6OA 1YUXA 3FKIL 1SFOL 4UY81 1Y1WL 2KN9A 3LWQB 2YU9L 1OWBA 2AYJA 1BQ9A 5C3EL 2APOB 5AI2A 3SS2A 6RXNA 3RZTA 1IW7D 1R0FA 4C3HL 3A44A 3WWNB 3S1NL 2V0FA 5RXNA 5EIOC 1SMWA 4BBRL 1QYBA 5IYDL 2KKDA 2JA8L 2XJVA 5MFPA 1H7VA 2Z3RB 5K2ME 5M5YL 1K83L 4JADA 5MLC3 2E2JL 4A3CL 3LPEB 4A3IL 2Y0SP 1ODHA 5DM71 3IU3I 5EINC 2C6AA 3S17L 1S2ZA 3PIP1 2XJPA 4JAGA 1WJVA 2JA6L 4B8CD 1WCML 3I4ML 2MS3A 5IY0A 3KYUA 4A93L 1PZXA 1SMUA 1TWAL 4JAFA 3GTOL 3GTGL 3S14L 2B5ID 3GTLL 3PO2L 4A3FL 2HR5A 1RDGA 1B2JA 3J7Z1 2NVTL 4BY7L 4BXXL 1B2OA 4A3KL 4LHNA 2M6PA 1BE7A 4POGA 4AR6A 1R0GA 5H1Sc 5C4JL 3LWPB 2DSXA 1YUZA 2M4YA 4AI0A 1PFWA 3RZOL 1TWHL 5MFZA 3K35A 5C44L 2A6ED 7RXNA 3GTPL 3MQKB 1LTLA 2AUSB 1VCXA 3RYGA 1VZGA 4AYBP 4A3DL 1FHHA 2XJQA 1IROA 2C6BA 5M3FL 3HOVL 4AI2A 4Y7NL 3S1QL 4C3IL 3H3VM 2VL6A 2E2HL 2NVXL 1Z92B 2A6HD 2JA7L 3ZG6A 4V196 2A69D 4E6YA 3B0AB 1VZHA 2BE5D 3I4NL 3H9BA 5GAEc 4Y52L 5MF6A 2CR8A 2K2DA 3HAXC 2WB1P 1VZIA 3H0GL 1P7PA 2LCQA 5AI3A 1ZRPA 2XJSA 1F4LA 2PVXA 1R0JA 1T9OA 3JR7A 1T9PA 1Y1VL 4ME3A 3S2DL 3HJYB 5GADc 2AQCA 1SMMA 8RXNA 1OWCA 5FJ8L 1CADA 3FDJA 4XGHA 1RWDA 5IYBL 1RYQA 4JAEA 4TPUA 2GMGA 1PFVA 2CKCA 1TWGL 4ZN3B 2RDVA 5JVG1 2PMZP 1B71A 3GTQL 2QL0A 1YK4A 3HOYL 2ERSA 1TWCL 2ERJA 3M3YL 1JYBA 3P8BA 3GTJL 3KYVA 3P2AA 4X6AL 3MSUA 1IU5A 4ZN1B 5IP9L 2R93L 1R9TL 2J9UB 2WAQP 4A3JL 5M3ML 1PFUA 3PWFA 2PPTA 4BY1L 1CAAA 2JA5L 3S1RL 3QVDA 4A3EL 1BFYA 5MGNA 4XXBB 1BRFA 1RYTA 4AHWA 3LNLA 3S2HL 1LKMA 4K9FA 3HOWL 2VUML 1NXGA 4G6BA 2H12A 4AHYA 3KYXA 2CKAA 1R0IA 2V0EA 3J7Y1 1NXEA 5GAGc 3S1ML 4AR4A 2RFKB 1B13A 2R7ZL 2PYAA 4AR5A 5JVH1 1S30A 1YV1A 2JI1A 2L0ZA 1IRNA 3K7AL 5IP7L 2XJUA 1C09A 4TVMA 1IU6A 4A3LL 4GS7D 2O5JD 3MPSA 5FLML 4RXNA 1BQ8A 1T9QA 3M4OL 4LHLA 3S15L 1DVBA 2NYDA 1S24A 2V3BB 2PSMC 3HKZP 3WWLA 3HOXL 1TWFL 4A3BL 1RB9A 3VPBE 1NNQA 3LWOB 1E8JA 2M4VA 4BBSL 2R92L 3CQZL 4YWLA 1I6HL 3PZAA 4QIWP 3PKJA 5C4XL 1FHMA 3PKIA 5DM61 2PVEA 3PL5A 2Z3QB 1R0HA 2E2IL 3H97A 3LWVB 4C3JL 2EY4E 4U671 3PO3L 2ZIXA 3GTML 1RDVA 4AHXA 4A3ML 5M5WL 3HOUL 2XJTA 2NVYL 1I3QL 3RZ6A 4A3GL 2XJRA 3KYYA 1LKPA 3NFPI 3HOZL 3H99A 3H9CA 2JI3A 1LKOA 3LWRB 5AN9H 4POFA 4AR3A 5M5XL 1QCVA 4AI3A 5GAHc 4WFN1 1QQTA 2A68D 3S16L
chains in the Genus database with same CATH topology
4AR5A 4B8CD 4AI1A 5JVH1 1S30A 1YV1A 2JI1A 2L0ZA 1DX8A 2MS3A 4YWMA 1IRNA 5IY0A 3QQCE 3KYUA 2LCQA 2XJUA 1C09A 2JI2A 5AI3A 1ZRPA 1SMUA 1YK5A 4TVMA 2XJSA 1IU6A 2PVXA 1R0JA 4AHZA 4GS7D 2O5JD 3MPSA 1T9OA 4RXNA 1BQ8A 1T9PA 3PIO1 4JAFA 4ME3A 3B08B 1T9QA 2B5ID 4LHLA 1DVBA 5GADc 1SMMA 2NYDA 1S24A 2HR5A 1OWCA 1RDGA 8RXNA 3KYWA 1B2JA 2PSMC 2V3BB 3J7Z1 3WWLA 1B2OA 1CADA 4XGHA 2M6OA 4LHNA 1YUXA 1RWDA 1RB9A 3VPBE 4UY81 1NNQA 2M6PA 1RYQA 4JAEA 4TPUA 1BE7A 2KN9A 4POGA 2GMGA 1E8JA 2M4VA 4AR6A 2CKCA 1R0GA 4ZN3B 5H1Sc 1OWBA 2RDVA 2AYJA 5JVG1 1BQ9A 1B71A 4YWLA 3PZAA 5AI2A 3PKJA 2DSXA 1YUZA 2M4YA 3SS2A 1FHMA 2QL0A 1YK4A 4AI0A 6RXNA 2ERSA 3PKIA 3RZTA 1IW7D 2ERJA 1JYBA 1R0FA 5DM61 3A44A 3P8BA 2PVEA 5MFZA 2Z3QB 3WWNB 3K35A 2A6ED 1R0HA 3KYVA 7RXNA 2XJPA 3P2AA 3MSUA 1IU5A 1LTLA 1VCXA 3RYGA 4ZN1B 1VZGA 2V0FA 5RXNA 4U671 1FHHA 2XJQA 2ZIXA 5EIOC 1IROA 2C6BA 2J9UB 4AI2A 1SMWA 1RDVA 1QYBA 2KKDA 4AHXA 2XJTA 3PWFA 2PPTA 2XJVA 1CAAA 5MFPA 2VL6A 1H7VA 3QVDA 3RZ6A 2Z3RB 1Z92B 2A6HD 5MGNA 1BFYA 4XXBB 3ZG6A 4V196 5K2ME 1BRFA 1RYTA 2A69D 4JADA 4AHWA 3LNLA 4E6YA 5MLC3 2XJRA 3KYYA 1LKPA 3NFPI 3LPEB 1LKMA 4K9FA 1ODHA 2JI3A 1LKOA 5DM71 5AN9H 1NXGA 3B0AB 2H12A 3IU3I 4G6BA 4AHYA 3KYXA 4AR3A 4POFA 1QCVA 2C6AA 5EINC 2CKAA 1R0IA 2V0EA 1VZHA 2BE5D 4AI3A 1S2ZA 3J7Y1 1NXEA 5GAEc 5GAGc 3PIP1 5GAHc 5MF6A 4AR4A 2CR8A 2K2DA 4WFN1 2A68D 1B13A 4JAGA 1VZIA 1WJVA 2PYAA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4AR5 A;  1S30 A;  1YV1 A;  1DX8 A;  2MS3 A;  4YWM A;  1IRN A;  5IY0 A;  3KYU A;  2LCQ A;  1C09 A;  5AI3 A;  1ZRP A;  1SMU A;  1YK5 A;  1IU6 A;  2PVX A;  1R0J A;  3MPS A;  1T9O A;  4RXN A;  1BQ8 A;  1T9P A;  4ME3 A;  1T9Q A;  1DVB A;  1SMM A;  1S24 A;  2HR5 A;  1RDG A;  8RXN A;  3KYW A;  1B2J A;  2V3B B;  1B2O A;  1CAD A;  1YUX A;  1RWD A;  1RB9 A;  1NNQ A;  4TPU A;  1BE7 A;  2KN9 A;  4POG A;  2GMG A;  1E8J A;  4AR6 A;  1R0G A;  2RDV A;  1BQ9 A;  1B71 A;  4YWL A;  3PZA A;  5AI2 A;  2DSX A;  1YUZ A;  2M4Y A;  3SS2 A;  1FHM A;  2QL0 A;  1YK4 A;  6RXN A;  3RZT A;  1JYB A;  1R0F A;  3A44 A;  2PVE A;  1R0H A;  3KYV A;  7RXN A;  1IU5 A;  1LTL A;  1VCX A;  3RYG A;  5RXN A;  1FHH A;  1IRO A;  1SMW A;  1RDV A;  1QYB A;  2KKD A;  3PWF A;  1CAA A;  2VL6 A;  1H7V A;  3QVD A;  3RZ6 A;  1BFY A;  1BRF A;  1RYT A;  3KYY A;  1LKP A;  1LKM A;  4K9F A;  1LKO A;  4POF A;  4AR3 A;  3KYX A;  1QCV A;  1R0I A;  1S2Z A;  4AR4 A;  2K2D A;  1B13 A;  2PYA A; 
#chains in the Genus database with same CATH topology
 4AI1 A;  3GTK L;  1PFY A;  1DX8 A;  4YWM A;  3QQC E;  2NVQ L;  2JI2 A;  1YK5 A;  4AHZ A;  3RZD L;  2B63 L;  3PIO 1;  3B08 B;  1I50 L;  3HJW B;  3KYW A;  2HVY C;  5IYC L;  4C2M 1;  2M6O A;  1YUX A;  3FKI L;  1SFO L;  4UY8 1;  1Y1W L;  2KN9 A;  3LWQ B;  2YU9 L;  1OWB A;  2AYJ A;  1BQ9 A;  5C3E L;  2APO B;  5AI2 A;  3SS2 A;  6RXN A;  3RZT A;  1IW7 D;  1R0F A;  4C3H L;  3A44 A;  3WWN B;  3S1N L;  2V0F A;  5RXN A;  5EIO C;  1SMW A;  4BBR L;  1QYB A;  5IYD L;  2KKD A;  2JA8 L;  2XJV A;  5MFP A;  1H7V A;  2Z3R B;  5K2M E;  5M5Y L;  1K83 L;  4JAD A;  5MLC 3;  2E2J L;  4A3C L;  3LPE B;  4A3I L;  2Y0S P;  1ODH A;  5DM7 1;  3IU3 I;  5EIN C;  2C6A A;  3S17 L;  1S2Z A;  3PIP 1;  2XJP A;  4JAG A;  1WJV A;  2JA6 L;  4B8C D;  1WCM L;  3I4M L;  2MS3 A;  5IY0 A;  3KYU A;  4A93 L;  1PZX A;  1SMU A;  1TWA L;  4JAF A;  3GTO L;  3GTG L;  3S14 L;  2B5I D;  3GTL L;  3PO2 L;  4A3F L;  2HR5 A;  1RDG A;  1B2J A;  3J7Z 1;  2NVT L;  4BY7 L;  4BXX L;  1B2O A;  4A3K L;  4LHN A;  2M6P A;  1BE7 A;  4POG A;  4AR6 A;  1R0G A;  5H1S c;  5C4J L;  3LWP B;  2DSX A;  1YUZ A;  2M4Y A;  4AI0 A;  1PFW A;  3RZO L;  1TWH L;  5MFZ A;  3K35 A;  5C44 L;  2A6E D;  7RXN A;  3GTP L;  3MQK B;  1LTL A;  2AUS B;  1VCX A;  3RYG A;  1VZG A;  4AYB P;  4A3D L;  1FHH A;  2XJQ A;  1IRO A;  2C6B A;  5M3F L;  3HOV L;  4AI2 A;  4Y7N L;  3S1Q L;  4C3I L;  3H3V M;  2VL6 A;  2E2H L;  2NVX L;  1Z92 B;  2A6H D;  2JA7 L;  3ZG6 A;  4V19 6;  2A69 D;  4E6Y A;  3B0A B;  1VZH A;  2BE5 D;  3I4N L;  3H9B A;  5GAE c;  4Y52 L;  5MF6 A;  2CR8 A;  2K2D A;  3HAX C;  2WB1 P;  1VZI A;  3H0G L;  1P7P A;  2LCQ A;  5AI3 A;  1ZRP A;  2XJS A;  1F4L A;  2PVX A;  1R0J A;  1T9O A;  3JR7 A;  1T9P A;  1Y1V L;  4ME3 A;  3S2D L;  3HJY B;  5GAD c;  2AQC A;  1SMM A;  8RXN A;  1OWC A;  5FJ8 L;  1CAD A;  3FDJ A;  4XGH A;  1RWD A;  5IYB L;  1RYQ A;  4JAE A;  4TPU A;  2GMG A;  1PFV A;  2CKC A;  1TWG L;  4ZN3 B;  2RDV A;  5JVG 1;  2PMZ P;  1B71 A;  3GTQ L;  2QL0 A;  1YK4 A;  3HOY L;  2ERS A;  1TWC L;  2ERJ A;  3M3Y L;  1JYB A;  3P8B A;  3GTJ L;  3KYV A;  3P2A A;  4X6A L;  3MSU A;  1IU5 A;  4ZN1 B;  5IP9 L;  2R93 L;  1R9T L;  2J9U B;  2WAQ P;  4A3J L;  5M3M L;  1PFU A;  3PWF A;  2PPT A;  4BY1 L;  1CAA A;  2JA5 L;  3S1R L;  3QVD A;  4A3E L;  1BFY A;  5MGN A;  4XXB B;  1BRF A;  1RYT A;  4AHW A;  3LNL A;  3S2H L;  1LKM A;  4K9F A;  3HOW L;  2VUM L;  1NXG A;  4G6B A;  2H12 A;  4AHY A;  3KYX A;  2CKA A;  1R0I A;  2V0E A;  3J7Y 1;  1NXE A;  5GAG c;  3S1M L;  4AR4 A;  2RFK B;  1B13 A;  2R7Z L;  2PYA A;  4AR5 A;  5JVH 1;  1S30 A;  1YV1 A;  2JI1 A;  2L0Z A;  1IRN A;  3K7A L;  5IP7 L;  2XJU A;  1C09 A;  4TVM A;  1IU6 A;  4A3L L;  4GS7 D;  2O5J D;  3MPS A;  5FLM L;  4RXN A;  1BQ8 A;  1T9Q A;  3M4O L;  4LHL A;  3S15 L;  1DVB A;  2NYD A;  1S24 A;  2V3B B;  2PSM C;  3HKZ P;  3WWL A;  3HOX L;  1TWF L;  4A3B L;  1RB9 A;  3VPB E;  1NNQ A;  3LWO B;  1E8J A;  2M4V A;  4BBS L;  2R92 L;  3CQZ L;  4YWL A;  1I6H L;  3PZA A;  4QIW P;  3PKJ A;  5C4X L;  1FHM A;  3PKI A;  5DM6 1;  2PVE A;  3PL5 A;  2Z3Q B;  1R0H A;  2E2I L;  3H97 A;  3LWV B;  4C3J L;  2EY4 E;  4U67 1;  3PO3 L;  2ZIX A;  3GTM L;  1RDV A;  4AHX A;  4A3M L;  5M5W L;  3HOU L;  2XJT A;  2NVY L;  1I3Q L;  3RZ6 A;  4A3G L;  2XJR A;  3KYY A;  1LKP A;  3NFP I;  3HOZ L;  3H99 A;  3H9C A;  2JI3 A;  1LKO A;  3LWR B;  5AN9 H;  4POF A;  4AR3 A;  5M5X L;  1QCV A;  4AI3 A;  5GAH c;  4WFN 1;  1QQT A;  2A68 D;  3S16 L; 
#chains in the Genus database with same CATH homology
 4AR5 A;  4B8C D;  4AI1 A;  5JVH 1;  1S30 A;  1YV1 A;  2JI1 A;  2L0Z A;  1DX8 A;  2MS3 A;  4YWM A;  1IRN A;  5IY0 A;  3QQC E;  3KYU A;  2LCQ A;  2XJU A;  1C09 A;  2JI2 A;  5AI3 A;  1ZRP A;  1SMU A;  1YK5 A;  4TVM A;  2XJS A;  1IU6 A;  2PVX A;  1R0J A;  4AHZ A;  4GS7 D;  2O5J D;  3MPS A;  1T9O A;  4RXN A;  1BQ8 A;  1T9P A;  3PIO 1;  4JAF A;  4ME3 A;  3B08 B;  1T9Q A;  2B5I D;  4LHL A;  1DVB A;  5GAD c;  1SMM A;  2NYD A;  1S24 A;  2HR5 A;  1OWC A;  1RDG A;  8RXN A;  3KYW A;  1B2J A;  2PSM C;  2V3B B;  3J7Z 1;  3WWL A;  1B2O A;  1CAD A;  4XGH A;  2M6O A;  4LHN A;  1YUX A;  1RWD A;  1RB9 A;  3VPB E;  4UY8 1;  1NNQ A;  2M6P A;  1RYQ A;  4JAE A;  4TPU A;  1BE7 A;  2KN9 A;  4POG A;  2GMG A;  1E8J A;  2M4V A;  4AR6 A;  2CKC A;  1R0G A;  4ZN3 B;  5H1S c;  1OWB A;  2RDV A;  2AYJ A;  5JVG 1;  1BQ9 A;  1B71 A;  4YWL A;  3PZA A;  5AI2 A;  3PKJ A;  2DSX A;  1YUZ A;  2M4Y A;  3SS2 A;  1FHM A;  2QL0 A;  1YK4 A;  4AI0 A;  6RXN A;  2ERS A;  3PKI A;  3RZT A;  1IW7 D;  2ERJ A;  1JYB A;  1R0F A;  5DM6 1;  3A44 A;  3P8B A;  2PVE A;  5MFZ A;  2Z3Q B;  3WWN B;  3K35 A;  2A6E D;  1R0H A;  3KYV A;  7RXN A;  2XJP A;  3P2A A;  3MSU A;  1IU5 A;  1LTL A;  1VCX A;  3RYG A;  4ZN1 B;  1VZG A;  2V0F A;  5RXN A;  4U67 1;  1FHH A;  2XJQ A;  2ZIX A;  5EIO C;  1IRO A;  2C6B A;  2J9U B;  4AI2 A;  1SMW A;  1RDV A;  1QYB A;  2KKD A;  4AHX A;  2XJT A;  3PWF A;  2PPT A;  2XJV A;  1CAA A;  5MFP A;  2VL6 A;  1H7V A;  3QVD A;  3RZ6 A;  2Z3R B;  1Z92 B;  2A6H D;  5MGN A;  1BFY A;  4XXB B;  3ZG6 A;  4V19 6;  5K2M E;  1BRF A;  1RYT A;  2A69 D;  4JAD A;  4AHW A;  3LNL A;  4E6Y A;  5MLC 3;  2XJR A;  3KYY A;  1LKP A;  3NFP I;  3LPE B;  1LKM A;  4K9F A;  1ODH A;  2JI3 A;  1LKO A;  5DM7 1;  5AN9 H;  1NXG A;  3B0A B;  2H12 A;  3IU3 I;  4G6B A;  4AHY A;  3KYX A;  4AR3 A;  4POF A;  1QCV A;  2C6A A;  5EIN C;  2CKA A;  1R0I A;  2V0E A;  1VZH A;  2BE5 D;  4AI3 A;  1S2Z A;  3J7Y 1;  1NXE A;  5GAE c;  5GAG c;  3PIP 1;  5GAH c;  5MF6 A;  4AR4 A;  2CR8 A;  2K2D A;  4WFN 1;  2A68 D;  1B13 A;  4JAG A;  1VZI A;  1WJV A;  2PYA A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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