1CADA

X-ray crystal structures of the oxidized and reduced forms of the rubredoxin from the marine hyperthermophilic archaebacterium pyrococcus furiosus
Total Genus 9
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
9
sequence length
53
structure length
53
Chain Sequence
AKWVCKICGYIYDEDAGDPDNGISPGTKFEELPDDWVCPICGAPKSEFEKLED
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title X-ray crystal structures of the oxidized and reduced forms of the rubredoxin from the marine hyperthermophilic archaebacterium Pyrococcus furiosus.
pubmed rcsb
molecule tags Electron transport
source organism Pyrococcus furiosus
molecule keywords RUBREDOXIN
total genus 9
structure length 53
sequence length 53
ec nomenclature
pdb deposition date 1992-05-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00301 Rubredoxin Rubredoxin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.20.28.10 Mainly Beta Single Sheet Rubrerythrin, domain 2 Rubrerythrin, domain 2 1cadA00
2KKDA 2M4YA 1IROA 1B2OA 2DSXA 1QCVA 1S24A 1R0IA 8RXNA 1NNQA 1FHHA 3KYWA 2RDVA 4AR3A 1SMWA 3KYXA 1S30A 4YWLA 2K2DA 1T9PA 3QVDA 1RYTA 2HR5A 1R0HA 1RB9A 4K9FA 4AR6A 5IY0A 1RWDA 1S2ZA 1C09A 1IU5A 1LTLA 1SMUA 3A44A 3RYGA 3KYVA 1BFYA 5AI3A 1B71A 2PVXA 1BE7A 4ME3A 1CAAA 2KN9A 3PZAA 1RDGA 1YUZA 3KYUA 1BQ8A 2GMGA 5RXNA 4POGA 1B13A 3PWFA 2V3BB 1DVBA 4AR5A 1BRFA 1R0JA 1YV1A 1E8JA 1R0GA 1T9QA 1YK4A 1QYBA 7RXNA 1LKMA 3KYYA 2VL6A 3SS2A 2LCQA 1JYBA 3RZ6A 1IU6A 3RZTA 1IRNA 2MS3A 4RXNA 1LKOA 2PYAA 3MPSA 1T9OA 4YWMA 1BQ9A 1YUXA 2PVEA 1FHMA 1CADA 1R0FA 1DX8A 1YK5A 4POFA 6RXNA 1RDVA 1B2JA 1H7VA 1ZRPA 1LKPA 1SMMA 4AR4A 5AI2A 4TPUA 2QL0A 1VCXA
chains in the Genus database with same CATH superfamily
3IU3I 1IROA 5M5WL 1R0IA 1FHHA 4AHWA 4WFN1 3KYXA 3CQZL 3LNLA 4E6YA 1RB9A 3WWLA 1RWDA 2M6OA 1NXEA 3LWOB 1IU5A 2CR8A 1SFOL 1NXGA 4AI0A 5DM61 3GTOL 3B08B 1Y1WL 2R7ZL 3RZOL 3S1NL 2XJPA 4A3CL 4AHXA 4A3GL 1I3QL 4QIWP 4V196 3HOUL 4A3IL 4POGA 3S1ML 1B13A 2V3BB 2Z3RB 4X6AL 1F4LA 1R0JA 3LWVB 1R0GA 5M3FL 7RXNA 1RYQA 1LKMA 4B8CD 1PFUA 4A3BL 2VL6A 4AHZA 4JADA 3GTPL 2LCQA 3PL5A 1JYBA 3S14L 2PSMC 1LKOA 2PYAA 4YWMA 3PKJA 4LHNA 4BY1L 4JAFA 5MFZA 4A3LL 1CADA 1R0FA 1YK5A 4POFA 4ZN1B 6RXNA 1P7PA 3RZDL 3H9BA 2A6ED 1H7VA 1ODHA 2J9UB 4UY81 4TPUA 3HOVL 1VCXA 2NVXL 4JAGA 5H1Sc 1QQTA 5EINC 2A6HD 4AR3A 4XXBB 3S2DL 3LPEB 1S30A 2RFKB 4YWLA 2K2DA 2E2JL 4C3HL 1RYTA 2HR5A 2BE5D 4K9FA 1VZIA 1C09A 3PO3L 4LHLA 1TWHL 3S1QL 4A3FL 4ME3A 2HVYC 5C3EL 3GTKL 1Y1VL 5GAGc 3GTLL 2H12A 5M3ML 1RDGA 3KYUA 1BQ8A 3P8BA 4A3EL 5RXNA 2M4VA 2JA8L 3S17L 1PFWA 1PZXA 1BRFA 1E8JA 1YV1A 1T9QA 3LWRB 4AHYA 2R92L 4C3IL 5M5YL 2C6AA 5C44L 4A93L 5C4XL 4BXXL 5GAHc 2JA7L 2MS3A 2NYDA 4RXNA 2JI3A 3S1RL 1BQ9A 1OWCA 2O5JD 1OWBA 4A3DL 1DX8A 3B0AB 1SMMA 4C2M1 1TWFL 4TVMA 2QL0A 5JVG1 4G6BA 2M4YA 4AI3A 1B2OA 4GS7D 3PIO1 1QCVA 1NNQA 1WCML 3HJWB 4Y52L 1IW7D 3S16L 2V0FA 2A69D 2XJQA 2L0ZA 2JI2A 3GTML 5K2ME 3S15L 1WJVA 1T9PA 4AR6A 2V0EA 3QVDA 1R0HA 5IY0A 2E2IL 3LWPB 1LTLA 3PIP1 3HKZP 2AUSB 5GADc 1TWAL 1SMUA 1K83L 3RYGA 3KYVA 2EY4E 3QQCE 5AI3A 4AYBP 2CKCA 2PVXA 1BE7A 1CAAA 2Z3QB 2JA5L 1VZGA 2Y0SP 4AI2A 3ZG6A 4BBSL 3PZAA 5DM71 4A3ML 2GMGA 4BBRL 2C6BA 5IP7L 4AR5A 2VUML 2A68D 2NVTL 1VZHA 4AI1A 1QYBA 1PFYA 5MF6A 5C4JL 3KYYA 3H97A 1Z92B 1PFVA 1I50L 3H0GL 3RZ6A 2NVYL 4JAEA 3GTJL 1IRNA 1T9OA 3H3VM 2PVEA 2XJUA 5IP9L 1FHMA 3P2AA 5MLC3 3VPBE 1B2JA 4A3KL 3HOZL 2AYJA 3WWNB 4AR4A 3H9CA 3JR7A 3HJYB 2JI1A 2KKDA 2DSXA 4A3JL 1S24A 8RXNA 5GAEc 3KYWA 2RDVA 1SMWA 5M5XL 3S2HL 5IYBL 5MGNA 2WAQP 5IYDL 3I4NL 2PPTA 5EIOC 1S2ZA 5JVH1 5FLML 2B5ID 2ZIXA 2JA6L 4XGHA 3J7Y1 3GTQL 4ZN3B 3A44A 1BFYA 1B71A 2XJRA 2B63L 3K7AL 3I4ML 3PO2L 1I6HL 2KN9A 3FKIL 5AN9H 1YUZA 3FDJA 2ERSA 4Y7NL 3MSUA 3M4OL 5FJ8L 1TWGL 3HOYL 3PWFA 1DVBA 2CKAA 3HOXL 2R93L 1YK4A 2AQCA 3LWQB 2WB1P 3HAXC 3SS2A 1R9TL 4U671 4C3JL 5IYCL 5MFPA 2M6PA 3K35A 2YU9L 1IU6A 3RZTA 2ERJA 4BY7L 3MPSA 3GTGL 3PKIA 1YUXA 1TWCL 2NVQL 3M3YL 2XJSA 2XJVA 1RDVA 3NFPI 3J7Z1 1ZRPA 1LKPA 2APOB 2XJTA 3H99A 2E2HL 5AI2A 2PMZP 3MQKB 3HOWL
chains in the Genus database with same CATH topology
2KKDA 4G6BA 2M4YA 3IU3I 4AI3A 1IROA 1B2OA 4JAGA 5H1Sc 4GS7D 5MGNA 2DSXA 3PIO1 1QCVA 1S24A 1R0IA 5EINC 8RXNA 1NNQA 5GAEc 2A6HD 1FHHA 1IW7D 3KYWA 2RDVA 4AHWA 2V0FA 2A69D 1SMWA 4AR3A 4WFN1 4XXBB 3KYXA 1S30A 3LPEB 2XJQA 2L0ZA 4YWLA 2JI2A 2K2DA 5K2ME 3LNLA 1WJVA 4AR6A 4E6YA 1T9PA 2V0EA 1RYTA 2HR5A 2BE5D 1RB9A 2PPTA 3QVDA 4K9FA 1RWDA 1R0HA 3WWLA 5EIOC 2M6OA 1NXEA 5IY0A 1VZIA 1S2ZA 1C09A 1IU5A 5JVH1 1LTLA 3PIP1 4LHLA 2CR8A 5JVG1 5GADc 2B5ID 2ZIXA 1NXGA 4AI0A 5DM61 3B08B 4XGHA 3J7Y1 1SMUA 4ZN3B 3A44A 2XJPA 3RYGA 3KYVA 3QQCE 1BFYA 5AI3A 1B71A 2CKCA 2XJRA 2PVXA 1BE7A 4ME3A 1CAAA 4AHXA 5GAGc 2Z3QB 1VZGA 2H12A 2KN9A 4AI2A 3ZG6A 5AN9H 3PZAA 1RDGA 5DM71 1YUZA 3KYUA 1BQ8A 2ERSA 4V196 3P8BA 2GMGA 3MSUA 5RXNA 2M4VA 4POGA 1B13A 3PWFA 2C6BA 2V3BB 1DVBA 2Z3RB 4AR5A 1BRFA 1R0JA 1YV1A 1E8JA 2CKAA 2A68D 1R0GA 1T9QA 1VZHA 1YK4A 4AI1A 4AHYA 1QYBA 1RYQA 1LKMA 7RXNA 2C6AA 5MF6A 4B8CD 3KYYA 2VL6A 3SS2A 4AHZA 4JADA 1Z92B 2LCQA 4U671 5MFPA 1JYBA 2M6PA 3K35A 5GAHc 3RZ6A 1IU6A 3RZTA 4JAEA 2ERJA 2PSMC 1IRNA 2MS3A 2NYDA 4RXNA 2JI3A 1LKOA 2PYAA 3MPSA 1T9OA 4YWMA 3PKJA 3PKIA 4LHNA 1BQ9A 1OWCA 1YUXA 2O5JD 2PVEA 4JAFA 2XJUA 1OWBA 5MFZA 1FHMA 1CADA 1R0FA 1DX8A 1YK5A 3P2AA 4POFA 2XJSA 3B0AB 5MLC3 4ZN1B 6RXNA 2XJVA 1RDVA 3NFPI 3VPBE 1B2JA 2A6ED 3J7Z1 1H7VA 1ODHA 2J9UB 1ZRPA 1LKPA 2XJTA 2AYJA 1SMMA 3WWNB 4AR4A 4UY81 5AI2A 4TPUA 4TVMA 2QL0A 2JI1A 1VCXA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2KKD A;  2M4Y A;  1IRO A;  1B2O A;  2DSX A;  1QCV A;  1S24 A;  1R0I A;  8RXN A;  1NNQ A;  1FHH A;  3KYW A;  2RDV A;  4AR3 A;  1SMW A;  3KYX A;  1S30 A;  4YWL A;  2K2D A;  1T9P A;  3QVD A;  1RYT A;  2HR5 A;  1R0H A;  1RB9 A;  4K9F A;  4AR6 A;  5IY0 A;  1RWD A;  1S2Z A;  1C09 A;  1IU5 A;  1LTL A;  1SMU A;  3A44 A;  3RYG A;  3KYV A;  1BFY A;  5AI3 A;  1B71 A;  2PVX A;  1BE7 A;  4ME3 A;  1CAA A;  2KN9 A;  3PZA A;  1RDG A;  1YUZ A;  3KYU A;  1BQ8 A;  2GMG A;  5RXN A;  4POG A;  1B13 A;  3PWF A;  2V3B B;  1DVB A;  4AR5 A;  1BRF A;  1R0J A;  1YV1 A;  1E8J A;  1R0G A;  1T9Q A;  1YK4 A;  1QYB A;  7RXN A;  1LKM A;  3KYY A;  2VL6 A;  3SS2 A;  2LCQ A;  1JYB A;  3RZ6 A;  1IU6 A;  3RZT A;  1IRN A;  2MS3 A;  4RXN A;  1LKO A;  2PYA A;  3MPS A;  1T9O A;  4YWM A;  1BQ9 A;  1YUX A;  2PVE A;  1FHM A;  1CAD A;  1R0F A;  1DX8 A;  1YK5 A;  4POF A;  6RXN A;  1RDV A;  1B2J A;  1H7V A;  1ZRP A;  1LKP A;  1SMM A;  4AR4 A;  5AI2 A;  4TPU A;  2QL0 A;  1VCX A; 
#chains in the Genus database with same CATH topology
 3IU3 I;  1IRO A;  5M5W L;  1R0I A;  1FHH A;  4AHW A;  4WFN 1;  3KYX A;  3CQZ L;  3LNL A;  4E6Y A;  1RB9 A;  3WWL A;  1RWD A;  2M6O A;  1NXE A;  3LWO B;  1IU5 A;  2CR8 A;  1SFO L;  1NXG A;  4AI0 A;  5DM6 1;  3GTO L;  3B08 B;  1Y1W L;  2R7Z L;  3RZO L;  3S1N L;  2XJP A;  4A3C L;  4AHX A;  4A3G L;  1I3Q L;  4QIW P;  4V19 6;  3HOU L;  4A3I L;  4POG A;  3S1M L;  1B13 A;  2V3B B;  2Z3R B;  4X6A L;  1F4L A;  1R0J A;  3LWV B;  1R0G A;  5M3F L;  7RXN A;  1RYQ A;  1LKM A;  4B8C D;  1PFU A;  4A3B L;  2VL6 A;  4AHZ A;  4JAD A;  3GTP L;  2LCQ A;  3PL5 A;  1JYB A;  3S14 L;  2PSM C;  1LKO A;  2PYA A;  4YWM A;  3PKJ A;  4LHN A;  4BY1 L;  4JAF A;  5MFZ A;  4A3L L;  1CAD A;  1R0F A;  1YK5 A;  4POF A;  4ZN1 B;  6RXN A;  1P7P A;  3RZD L;  3H9B A;  2A6E D;  1H7V A;  1ODH A;  2J9U B;  4UY8 1;  4TPU A;  3HOV L;  1VCX A;  2NVX L;  4JAG A;  5H1S c;  1QQT A;  5EIN C;  2A6H D;  4AR3 A;  4XXB B;  3S2D L;  3LPE B;  1S30 A;  2RFK B;  4YWL A;  2K2D A;  2E2J L;  4C3H L;  1RYT A;  2HR5 A;  2BE5 D;  4K9F A;  1VZI A;  1C09 A;  3PO3 L;  4LHL A;  1TWH L;  3S1Q L;  4A3F L;  4ME3 A;  2HVY C;  5C3E L;  3GTK L;  1Y1V L;  5GAG c;  3GTL L;  2H12 A;  5M3M L;  1RDG A;  3KYU A;  1BQ8 A;  3P8B A;  4A3E L;  5RXN A;  2M4V A;  2JA8 L;  3S17 L;  1PFW A;  1PZX A;  1BRF A;  1E8J A;  1YV1 A;  1T9Q A;  3LWR B;  4AHY A;  2R92 L;  4C3I L;  5M5Y L;  2C6A A;  5C44 L;  4A93 L;  5C4X L;  4BXX L;  5GAH c;  2JA7 L;  2MS3 A;  2NYD A;  4RXN A;  2JI3 A;  3S1R L;  1BQ9 A;  1OWC A;  2O5J D;  1OWB A;  4A3D L;  1DX8 A;  3B0A B;  1SMM A;  4C2M 1;  1TWF L;  4TVM A;  2QL0 A;  5JVG 1;  4G6B A;  2M4Y A;  4AI3 A;  1B2O A;  4GS7 D;  3PIO 1;  1QCV A;  1NNQ A;  1WCM L;  3HJW B;  4Y52 L;  1IW7 D;  3S16 L;  2V0F A;  2A69 D;  2XJQ A;  2L0Z A;  2JI2 A;  3GTM L;  5K2M E;  3S15 L;  1WJV A;  1T9P A;  4AR6 A;  2V0E A;  3QVD A;  1R0H A;  5IY0 A;  2E2I L;  3LWP B;  1LTL A;  3PIP 1;  3HKZ P;  2AUS B;  5GAD c;  1TWA L;  1SMU A;  1K83 L;  3RYG A;  3KYV A;  2EY4 E;  3QQC E;  5AI3 A;  4AYB P;  2CKC A;  2PVX A;  1BE7 A;  1CAA A;  2Z3Q B;  2JA5 L;  1VZG A;  2Y0S P;  4AI2 A;  3ZG6 A;  4BBS L;  3PZA A;  5DM7 1;  4A3M L;  2GMG A;  4BBR L;  2C6B A;  5IP7 L;  4AR5 A;  2VUM L;  2A68 D;  2NVT L;  1VZH A;  4AI1 A;  1QYB A;  1PFY A;  5MF6 A;  5C4J L;  3KYY A;  3H97 A;  1Z92 B;  1PFV A;  1I50 L;  3H0G L;  3RZ6 A;  2NVY L;  4JAE A;  3GTJ L;  1IRN A;  1T9O A;  3H3V M;  2PVE A;  2XJU A;  5IP9 L;  1FHM A;  3P2A A;  5MLC 3;  3VPB E;  1B2J A;  4A3K L;  3HOZ L;  2AYJ A;  3WWN B;  4AR4 A;  3H9C A;  3JR7 A;  3HJY B;  2JI1 A;  2KKD A;  2DSX A;  4A3J L;  1S24 A;  8RXN A;  5GAE c;  3KYW A;  2RDV A;  1SMW A;  5M5X L;  3S2H L;  5IYB L;  5MGN A;  2WAQ P;  5IYD L;  3I4N L;  2PPT A;  5EIO C;  1S2Z A;  5JVH 1;  5FLM L;  2B5I D;  2ZIX A;  2JA6 L;  4XGH A;  3J7Y 1;  3GTQ L;  4ZN3 B;  3A44 A;  1BFY A;  1B71 A;  2XJR A;  2B63 L;  3K7A L;  3I4M L;  3PO2 L;  1I6H L;  2KN9 A;  3FKI L;  5AN9 H;  1YUZ A;  3FDJ A;  2ERS A;  4Y7N L;  3MSU A;  3M4O L;  5FJ8 L;  1TWG L;  3HOY L;  3PWF A;  1DVB A;  2CKA A;  3HOX L;  2R93 L;  1YK4 A;  2AQC A;  3LWQ B;  2WB1 P;  3HAX C;  3SS2 A;  1R9T L;  4U67 1;  4C3J L;  5IYC L;  5MFP A;  2M6P A;  3K35 A;  2YU9 L;  1IU6 A;  3RZT A;  2ERJ A;  4BY7 L;  3MPS A;  3GTG L;  3PKI A;  1YUX A;  1TWC L;  2NVQ L;  3M3Y L;  2XJS A;  2XJV A;  1RDV A;  3NFP I;  3J7Z 1;  1ZRP A;  1LKP A;  2APO B;  2XJT A;  3H99 A;  2E2H L;  5AI2 A;  2PMZ P;  3MQK B;  3HOW L; 
#chains in the Genus database with same CATH homology
 2KKD A;  4G6B A;  2M4Y A;  3IU3 I;  4AI3 A;  1IRO A;  1B2O A;  4JAG A;  5H1S c;  4GS7 D;  5MGN A;  2DSX A;  3PIO 1;  1QCV A;  1S24 A;  1R0I A;  5EIN C;  8RXN A;  1NNQ A;  5GAE c;  2A6H D;  1FHH A;  1IW7 D;  3KYW A;  2RDV A;  4AHW A;  2V0F A;  2A69 D;  1SMW A;  4AR3 A;  4WFN 1;  4XXB B;  3KYX A;  1S30 A;  3LPE B;  2XJQ A;  2L0Z A;  4YWL A;  2JI2 A;  2K2D A;  5K2M E;  3LNL A;  1WJV A;  4AR6 A;  4E6Y A;  1T9P A;  2V0E A;  1RYT A;  2HR5 A;  2BE5 D;  1RB9 A;  2PPT A;  3QVD A;  4K9F A;  1RWD A;  1R0H A;  3WWL A;  5EIO C;  2M6O A;  1NXE A;  5IY0 A;  1VZI A;  1S2Z A;  1C09 A;  1IU5 A;  5JVH 1;  1LTL A;  3PIP 1;  4LHL A;  2CR8 A;  5JVG 1;  5GAD c;  2B5I D;  2ZIX A;  1NXG A;  4AI0 A;  5DM6 1;  3B08 B;  4XGH A;  3J7Y 1;  1SMU A;  4ZN3 B;  3A44 A;  2XJP A;  3RYG A;  3KYV A;  3QQC E;  1BFY A;  5AI3 A;  1B71 A;  2CKC A;  2XJR A;  2PVX A;  1BE7 A;  4ME3 A;  1CAA A;  4AHX A;  5GAG c;  2Z3Q B;  1VZG A;  2H12 A;  2KN9 A;  4AI2 A;  3ZG6 A;  5AN9 H;  3PZA A;  1RDG A;  5DM7 1;  1YUZ A;  3KYU A;  1BQ8 A;  2ERS A;  4V19 6;  3P8B A;  2GMG A;  3MSU A;  5RXN A;  2M4V A;  4POG A;  1B13 A;  3PWF A;  2C6B A;  2V3B B;  1DVB A;  2Z3R B;  4AR5 A;  1BRF A;  1R0J A;  1YV1 A;  1E8J A;  2CKA A;  2A68 D;  1R0G A;  1T9Q A;  1VZH A;  1YK4 A;  4AI1 A;  4AHY A;  1QYB A;  1RYQ A;  1LKM A;  7RXN A;  2C6A A;  5MF6 A;  4B8C D;  3KYY A;  2VL6 A;  3SS2 A;  4AHZ A;  4JAD A;  1Z92 B;  2LCQ A;  4U67 1;  5MFP A;  1JYB A;  2M6P A;  3K35 A;  5GAH c;  3RZ6 A;  1IU6 A;  3RZT A;  4JAE A;  2ERJ A;  2PSM C;  1IRN A;  2MS3 A;  2NYD A;  4RXN A;  2JI3 A;  1LKO A;  2PYA A;  3MPS A;  1T9O A;  4YWM A;  3PKJ A;  3PKI A;  4LHN A;  1BQ9 A;  1OWC A;  1YUX A;  2O5J D;  2PVE A;  4JAF A;  2XJU A;  1OWB A;  5MFZ A;  1FHM A;  1CAD A;  1R0F A;  1DX8 A;  1YK5 A;  3P2A A;  4POF A;  2XJS A;  3B0A B;  5MLC 3;  4ZN1 B;  6RXN A;  2XJV A;  1RDV A;  3NFP I;  3VPB E;  1B2J A;  2A6E D;  3J7Z 1;  1H7V A;  1ODH A;  2J9U B;  1ZRP A;  1LKP A;  2XJT A;  2AYJ A;  1SMM A;  3WWN B;  4AR4 A;  4UY8 1;  5AI2 A;  4TPU A;  4TVM A;  2QL0 A;  2JI1 A;  1VCX A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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