1E8JA

Solution structure of desulfovibrio gigas zinc rubredoxin, nmr, 20 structures
Total Genus 2

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
2
sequence length
52
structure length
52
Chain Sequence
MDIYVCTVCGYEYDPAKGDPDSGIKPGTKFEDLPDDWACPVCGASKDAFEKQ

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYS1 (4-6)S3 (49-51)3H1 (15-17)TIV4 (25-28)TI1 (29-32)TIV6 (39-42)Updating...
connected with : NaN
molecule tags Electron transport
source organism Desulfovibrio gigas
publication title NMR Structure of Desulfovibrio Gigas Rubredoxin: A Model for Studying Protein Stabilization by Compatible Solutes.
pubmed rcsb
molecule keywords RUBREDOXIN
total genus 2
structure length 52
sequence length 52
ec nomenclature
pdb deposition date 2000-09-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00301 Rubredoxin Rubredoxin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.20.28.10 Mainly Beta Single Sheet Rubrerythrin, domain 2 Rubrerythrin, domain 2 1e8jA00
4K9FA 1T9OA 1RYTA 1B71A 1IU5A 1S2ZA 2KKDA 1FHHA 2RDVA 1B13A 5AI2A 2DSXA 1ZRPA 1FHMA 1LKPA 1RWDA 2LCQA 8RXNA 4AR3A 4TPUA 3RZ6A 1R0GA 4YWLA 1BQ8A 1RDVA 4ME3A 4RXNA 2K2DA 1IRNA 1C09A 1R0FA 1LKOA 1BE7A 3SS2A 4POFA 1S30A 1T9PA 1BFYA 3PWFA 6RXNA 5RXNA 2KN9A 3KYXA 1SMMA 1SMWA 3A44A 1CADA 3MPSA 1E8JA 7RXNA 4YWMA 3KYUA 1JYBA 1LKMA 1QYBA 1H7VA 2M4YA 1S24A 1YK5A 3PZAA 1CAAA 1YK4A 3KYWA 1LTLA 1SMUA 5AI3A 1QCVA 4AR4A 3KYYA 2PVXA 2V3BB 3QVDA 3RZTA 4POGA 1R0IA 1YUXA 1R0JA 1BRFA 4AR6A 3RYGA 1T9QA 1DVBA 1IROA 1BQ9A 2QL0A 2GMGA 2PYAA 2VL6A 1RDGA 1DX8A 1R0HA 2PVEA 2MS3A 1B2JA 1YV1A 1VCXA 5IY0A 1RB9A 2HR5A 1NNQA 1IU6A 4AR5A 3KYVA 1YUZA 1B2OA
chains in the Genus database with same CATH superfamily
1K83L 5K2ME 4AHXA 3FKIL 5JVH1 3HOUL 2BE5D 1FHMA 2A6HD 3ZG6A 4BBRL 3GTOL 3S2HL 2AQCA 4A3GL 2CKAA 4AHZA 2B5ID 3H9CA 3GTKL 1RYQA 2NVTL 2H12A 3B0AB 1WJVA 1OWBA 3HOYL 3HJYB 3KYXA 1SMWA 5MLC3 5MFPA 4U671 3H99A 3KYUA 4A3KL 1PFUA 2APOB 1PFWA 5M3FL 2RFKB 3HJWB 2O5JD 3PZAA 3PO3L 1YK4A 1F4LA 2XJTA 1LTLA 3GTPL 3P8BA 4LHLA 2XJUA 1ODHA 3QVDA 4POGA 2E2JL 1YUXA 5DM61 5M5WL 1R9TL 2B63L 1IROA 1BQ9A 4TVMA 2E2HL 1RDGA 1TWGL 5FJ8L 5EINC 4JAEA 1PZXA 2M4VA 2V0EA 3S2DL 3PIP1 4LHNA 2ERJA 1I50L 3HOZL 3IU3I 3QQCE 1IU6A 1PFYA 4AR5A 1B2OA 5MFZA 5IP7L 1RYTA 4AI3A 2RDVA 1B13A 5AI2A 2R92L 3GTQL 3HKZP 2C6BA 2L0ZA 5C4XL 5GAHc 8RXNA 2PPTA 3S14L 2JA5L 4YWLA 1RDVA 2Z3QB 2NVXL 3MQKB 3PKIA 4JADA 4RXNA 2K2DA 4XXBB 3RZOL 2JA8L 3GTJL 1BE7A 3SS2A 4A3IL 5EIOC 1T9PA 3NFPI 6RXNA 3J7Y1 1Y1WL 3VPBE 1CADA 2A68D 3MPSA 3J7Z1 5M5YL 3H0GL 1H7VA 5C3EL 5AN9H 2JI3A 4BXXL 4A3BL 4A3EL 3I4ML 2ZIXA 3M3YL 5AI3A 4QIWP 3HOXL 1P7PA 2V3BB 3RZTA 2M6PA 2A6ED 4AR6A 3RYGA 1T9QA 5IYDL 2GMGA 2PYAA 2VL6A 2Z3RB 3S15L 5DM71 1DX8A 2AUSB 2PVEA 1B2JA 1YV1A 1TWAL 5M5XL 5FLML 1RB9A 3GTML 2HR5A 4B8CD 3GTLL 1VZHA 2NVYL 4K9FA 5H1Sc 4AYBP 1T9OA 3I4NL 1IU5A 2J9UB 2KKDA 3S16L 4XGHA 2EY4E 2JA7L 5JVG1 2DSXA 5IYBL 5GAGc 1I6HL 5M3ML 1RWDA 2LCQA 4AR3A 3RZ6A 1R0GA 1WCML 4ME3A 1LKOA 4A93L 4A3CL 4A3FL 5C44L 4BY7L 2JI1A 3LWOB 4AI1A 3H3VM 4E6YA 3FDJA 5RXNA 2KN9A 1Z92B 3CQZL 4JAFA 1SMMA 3S1ML 1TWFL 4C3IL 1IW7D 7RXNA 4G6BA 3LPEB 1JYBA 1QYBA 2M4YA 4Y7NL 2M6OA 5IP9L 1YK5A 3K7AL 2Y0SP 1CAAA 3KYWA 1SMUA 3HOWL 1VZIA 2WB1P 2PVXA 1R0IA 2VUML 4C3JL 1R0JA 1DVBA 4A3LL 3PO2L 2R93L 3S1RL 2CR8A 2XJQA 3LWPB 3WWLA 2PMZP 2MS3A 2YU9L 1VCXA 3MSUA 4AHYA 5IY0A 3K35A 4JAGA 2XJPA 4BY1L 1NNQA 3S17L 3PIO1 3KYVA 1YUZA 2XJRA 1NXGA 5MF6A 1I3QL 4ZN1B 1B71A 1S2ZA 3LWVB 1FHHA 3LWQB 2NVQL 4Y52L 1ZRPA 3LWRB 1LKPA 4TPUA 1BQ8A 4ZN3B 1IRNA 1C09A 1R0FA 4A3DL 4AI2A 4POFA 2ERSA 1OWCA 2JA6L 1S30A 1BFYA 2C6AA 3PWFA 3GTGL 5GADc 3HOVL 1QQTA 4AHWA 1NXEA 3A44A 2R7ZL 1E8JA 3S1QL 4UY81 4YWMA 1LKMA 4V196 3PKJA 4A3JL 3JR7A 1S24A 4BBSL 2JI2A 4WFN1 2PSMC 2AYJA 2XJVA 1QCVA 1TWHL 3KYYA 4AR4A 4X6AL 3WWNB 2CKCA 1BRFA 1Y1VL 3H9BA 3S1NL 2QL0A 2E2IL 1VZGA 2A69D 4C3HL 5IYCL 5GAEc 5MGNA 3H97A 1R0HA 2WAQP 4AI0A 3PL5A 1PFVA 3M4OL 4GS7D 4A3ML 3RZDL 2HVYC 2XJSA 1TWCL 2NYDA 5C4JL 3LNLA 1SFOL 3P2AA 3B08B 2V0FA 3HAXC 4C2M1
chains in the Genus database with same CATH topology
1NXGA 5MF6A 4K9FA 5H1Sc 4ZN1B 1T9OA 5K2ME 1RYTA 1B71A 1IU5A 1S2ZA 4AHXA 2J9UB 1FHHA 2KKDA 4AI3A 5JVH1 2RDVA 1B13A 5AI2A 4XGHA 2BE5D 5JVG1 2DSXA 1ZRPA 5GAGc 2C6BA 2L0ZA 1FHMA 1LKPA 1RWDA 2A6HD 2LCQA 3ZG6A 5GAHc 8RXNA 4AR3A 2PPTA 4TPUA 3RZ6A 1R0GA 4YWLA 1BQ8A 2XJRA 1RDVA 2Z3QB 4ME3A 3PKIA 2CKAA 4JADA 4RXNA 4AHZA 2B5ID 2K2DA 1IRNA 4XXBB 1C09A 4ZN3B 1R0FA 1LKOA 1RYQA 1BE7A 4AI2A 3SS2A 4POFA 2ERSA 5EIOC 2JI1A 1OWCA 1S30A 1T9PA 3NFPI 2C6AA 4AI1A 2H12A 1BFYA 3PWFA 3B0AB 1WJVA 1OWBA 4E6YA 5GADc 6RXNA 5RXNA 2KN9A 3J7Y1 1Z92B 3KYXA 3VPBE 4JAFA 4AHWA 1SMMA 1SMWA 5MLC3 1NXEA 5MFPA 1IW7D 3A44A 1CADA 2A68D 3MPSA 1E8JA 3J7Z1 7RXNA 4UY81 4U671 4G6BA 4YWMA 3LPEB 3KYUA 1JYBA 1LKMA 1QYBA 1H7VA 4V196 2M4YA 3PKJA 2M6OA 1S24A 5AN9H 1YK5A 2O5JD 2JI2A 2JI3A 3PZAA 1CAAA 1YK4A 3KYWA 2XJTA 4WFN1 1LTLA 2PSMC 1SMUA 1VZIA 2AYJA 3P8BA 2ZIXA 4LHLA 2XJUA 5AI3A 2XJVA 1QCVA 1ODHA 4AR4A 3KYYA 2PVXA 2V3BB 3QVDA 3RZTA 4POGA 1R0IA 3WWNB 2CKCA 1YUXA 5DM61 2M6PA 1R0JA 2A6ED 1BRFA 4AR6A 3RYGA 1T9QA 1DVBA 1IROA 1BQ9A 4TVMA 2QL0A 2GMGA 2PYAA 2VL6A 2Z3RB 1RDGA 5DM71 1VZGA 2A69D 2CR8A 2XJQA 3WWLA 5EINC 4JAEA 5GAEc 5MGNA 1DX8A 1R0HA 2M4VA 2PVEA 2MS3A 2V0EA 4AI0A 1B2JA 1YV1A 1VCXA 3MSUA 4AHYA 5IY0A 3K35A 4GS7D 3PIP1 4JAGA 4LHNA 2ERJA 1RB9A 2XJSA 2XJPA 2HR5A 2NYDA 3LNLA 4B8CD 1NNQA 1VZHA 3IU3I 3QQCE 1IU6A 3P2AA 3B08B 3PIO1 2V0FA 4AR5A 3KYVA 1YUZA 1B2OA 5MFZA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4K9F A;  1T9O A;  1RYT A;  1B71 A;  1IU5 A;  1S2Z A;  2KKD A;  1FHH A;  2RDV A;  1B13 A;  5AI2 A;  2DSX A;  1ZRP A;  1FHM A;  1LKP A;  1RWD A;  2LCQ A;  8RXN A;  4AR3 A;  4TPU A;  3RZ6 A;  1R0G A;  4YWL A;  1BQ8 A;  1RDV A;  4ME3 A;  4RXN A;  2K2D A;  1IRN A;  1C09 A;  1R0F A;  1LKO A;  1BE7 A;  3SS2 A;  4POF A;  1S30 A;  1T9P A;  1BFY A;  3PWF A;  6RXN A;  5RXN A;  2KN9 A;  3KYX A;  1SMM A;  1SMW A;  3A44 A;  1CAD A;  3MPS A;  1E8J A;  7RXN A;  4YWM A;  3KYU A;  1JYB A;  1LKM A;  1QYB A;  1H7V A;  2M4Y A;  1S24 A;  1YK5 A;  3PZA A;  1CAA A;  1YK4 A;  3KYW A;  1LTL A;  1SMU A;  5AI3 A;  1QCV A;  4AR4 A;  3KYY A;  2PVX A;  2V3B B;  3QVD A;  3RZT A;  4POG A;  1R0I A;  1YUX A;  1R0J A;  1BRF A;  4AR6 A;  3RYG A;  1T9Q A;  1DVB A;  1IRO A;  1BQ9 A;  2QL0 A;  2GMG A;  2PYA A;  2VL6 A;  1RDG A;  1DX8 A;  1R0H A;  2PVE A;  2MS3 A;  1B2J A;  1YV1 A;  1VCX A;  5IY0 A;  1RB9 A;  2HR5 A;  1NNQ A;  1IU6 A;  4AR5 A;  3KYV A;  1YUZ A;  1B2O A; 
#chains in the Genus database with same CATH topology
 1K83 L;  5K2M E;  4AHX A;  3FKI L;  5JVH 1;  3HOU L;  2BE5 D;  1FHM A;  2A6H D;  3ZG6 A;  4BBR L;  3GTO L;  3S2H L;  2AQC A;  4A3G L;  2CKA A;  4AHZ A;  2B5I D;  3H9C A;  3GTK L;  1RYQ A;  2NVT L;  2H12 A;  3B0A B;  1WJV A;  1OWB A;  3HOY L;  3HJY B;  3KYX A;  1SMW A;  5MLC 3;  5MFP A;  4U67 1;  3H99 A;  3KYU A;  4A3K L;  1PFU A;  2APO B;  1PFW A;  5M3F L;  2RFK B;  3HJW B;  2O5J D;  3PZA A;  3PO3 L;  1YK4 A;  1F4L A;  2XJT A;  1LTL A;  3GTP L;  3P8B A;  4LHL A;  2XJU A;  1ODH A;  3QVD A;  4POG A;  2E2J L;  1YUX A;  5DM6 1;  5M5W L;  1R9T L;  2B63 L;  1IRO A;  1BQ9 A;  4TVM A;  2E2H L;  1RDG A;  1TWG L;  5FJ8 L;  5EIN C;  4JAE A;  1PZX A;  2M4V A;  2V0E A;  3S2D L;  3PIP 1;  4LHN A;  2ERJ A;  1I50 L;  3HOZ L;  3IU3 I;  3QQC E;  1IU6 A;  1PFY A;  4AR5 A;  1B2O A;  5MFZ A;  5IP7 L;  1RYT A;  4AI3 A;  2RDV A;  1B13 A;  5AI2 A;  2R92 L;  3GTQ L;  3HKZ P;  2C6B A;  2L0Z A;  5C4X L;  5GAH c;  8RXN A;  2PPT A;  3S14 L;  2JA5 L;  4YWL A;  1RDV A;  2Z3Q B;  2NVX L;  3MQK B;  3PKI A;  4JAD A;  4RXN A;  2K2D A;  4XXB B;  3RZO L;  2JA8 L;  3GTJ L;  1BE7 A;  3SS2 A;  4A3I L;  5EIO C;  1T9P A;  3NFP I;  6RXN A;  3J7Y 1;  1Y1W L;  3VPB E;  1CAD A;  2A68 D;  3MPS A;  3J7Z 1;  5M5Y L;  3H0G L;  1H7V A;  5C3E L;  5AN9 H;  2JI3 A;  4BXX L;  4A3B L;  4A3E L;  3I4M L;  2ZIX A;  3M3Y L;  5AI3 A;  4QIW P;  3HOX L;  1P7P A;  2V3B B;  3RZT A;  2M6P A;  2A6E D;  4AR6 A;  3RYG A;  1T9Q A;  5IYD L;  2GMG A;  2PYA A;  2VL6 A;  2Z3R B;  3S15 L;  5DM7 1;  1DX8 A;  2AUS B;  2PVE A;  1B2J A;  1YV1 A;  1TWA L;  5M5X L;  5FLM L;  1RB9 A;  3GTM L;  2HR5 A;  4B8C D;  3GTL L;  1VZH A;  2NVY L;  4K9F A;  5H1S c;  4AYB P;  1T9O A;  3I4N L;  1IU5 A;  2J9U B;  2KKD A;  3S16 L;  4XGH A;  2EY4 E;  2JA7 L;  5JVG 1;  2DSX A;  5IYB L;  5GAG c;  1I6H L;  5M3M L;  1RWD A;  2LCQ A;  4AR3 A;  3RZ6 A;  1R0G A;  1WCM L;  4ME3 A;  1LKO A;  4A93 L;  4A3C L;  4A3F L;  5C44 L;  4BY7 L;  2JI1 A;  3LWO B;  4AI1 A;  3H3V M;  4E6Y A;  3FDJ A;  5RXN A;  2KN9 A;  1Z92 B;  3CQZ L;  4JAF A;  1SMM A;  3S1M L;  1TWF L;  4C3I L;  1IW7 D;  7RXN A;  4G6B A;  3LPE B;  1JYB A;  1QYB A;  2M4Y A;  4Y7N L;  2M6O A;  5IP9 L;  1YK5 A;  3K7A L;  2Y0S P;  1CAA A;  3KYW A;  1SMU A;  3HOW L;  1VZI A;  2WB1 P;  2PVX A;  1R0I A;  2VUM L;  4C3J L;  1R0J A;  1DVB A;  4A3L L;  3PO2 L;  2R93 L;  3S1R L;  2CR8 A;  2XJQ A;  3LWP B;  3WWL A;  2PMZ P;  2MS3 A;  2YU9 L;  1VCX A;  3MSU A;  4AHY A;  5IY0 A;  3K35 A;  4JAG A;  2XJP A;  4BY1 L;  1NNQ A;  3S17 L;  3PIO 1;  3KYV A;  1YUZ A;  2XJR A;  1NXG A;  5MF6 A;  1I3Q L;  4ZN1 B;  1B71 A;  1S2Z A;  3LWV B;  1FHH A;  3LWQ B;  2NVQ L;  4Y52 L;  1ZRP A;  3LWR B;  1LKP A;  4TPU A;  1BQ8 A;  4ZN3 B;  1IRN A;  1C09 A;  1R0F A;  4A3D L;  4AI2 A;  4POF A;  2ERS A;  1OWC A;  2JA6 L;  1S30 A;  1BFY A;  2C6A A;  3PWF A;  3GTG L;  5GAD c;  3HOV L;  1QQT A;  4AHW A;  1NXE A;  3A44 A;  2R7Z L;  1E8J A;  3S1Q L;  4UY8 1;  4YWM A;  1LKM A;  4V19 6;  3PKJ A;  4A3J L;  3JR7 A;  1S24 A;  4BBS L;  2JI2 A;  4WFN 1;  2PSM C;  2AYJ A;  2XJV A;  1QCV A;  1TWH L;  3KYY A;  4AR4 A;  4X6A L;  3WWN B;  2CKC A;  1BRF A;  1Y1V L;  3H9B A;  3S1N L;  2QL0 A;  2E2I L;  1VZG A;  2A69 D;  4C3H L;  5IYC L;  5GAE c;  5MGN A;  3H97 A;  1R0H A;  2WAQ P;  4AI0 A;  3PL5 A;  1PFV A;  3M4O L;  4GS7 D;  4A3M L;  3RZD L;  2HVY C;  2XJS A;  1TWC L;  2NYD A;  5C4J L;  3LNL A;  1SFO L;  3P2A A;  3B08 B;  2V0F A;  3HAX C;  4C2M 1; 
#chains in the Genus database with same CATH homology
 1NXG A;  5MF6 A;  4K9F A;  5H1S c;  4ZN1 B;  1T9O A;  5K2M E;  1RYT A;  1B71 A;  1IU5 A;  1S2Z A;  4AHX A;  2J9U B;  1FHH A;  2KKD A;  4AI3 A;  5JVH 1;  2RDV A;  1B13 A;  5AI2 A;  4XGH A;  2BE5 D;  5JVG 1;  2DSX A;  1ZRP A;  5GAG c;  2C6B A;  2L0Z A;  1FHM A;  1LKP A;  1RWD A;  2A6H D;  2LCQ A;  3ZG6 A;  5GAH c;  8RXN A;  4AR3 A;  2PPT A;  4TPU A;  3RZ6 A;  1R0G A;  4YWL A;  1BQ8 A;  2XJR A;  1RDV A;  2Z3Q B;  4ME3 A;  3PKI A;  2CKA A;  4JAD A;  4RXN A;  4AHZ A;  2B5I D;  2K2D A;  1IRN A;  4XXB B;  1C09 A;  4ZN3 B;  1R0F A;  1LKO A;  1RYQ A;  1BE7 A;  4AI2 A;  3SS2 A;  4POF A;  2ERS A;  5EIO C;  2JI1 A;  1OWC A;  1S30 A;  1T9P A;  3NFP I;  2C6A A;  4AI1 A;  2H12 A;  1BFY A;  3PWF A;  3B0A B;  1WJV A;  1OWB A;  4E6Y A;  5GAD c;  6RXN A;  5RXN A;  2KN9 A;  3J7Y 1;  1Z92 B;  3KYX A;  3VPB E;  4JAF A;  4AHW A;  1SMM A;  1SMW A;  5MLC 3;  1NXE A;  5MFP A;  1IW7 D;  3A44 A;  1CAD A;  2A68 D;  3MPS A;  1E8J A;  3J7Z 1;  7RXN A;  4UY8 1;  4U67 1;  4G6B A;  4YWM A;  3LPE B;  3KYU A;  1JYB A;  1LKM A;  1QYB A;  1H7V A;  4V19 6;  2M4Y A;  3PKJ A;  2M6O A;  1S24 A;  5AN9 H;  1YK5 A;  2O5J D;  2JI2 A;  2JI3 A;  3PZA A;  1CAA A;  1YK4 A;  3KYW A;  2XJT A;  4WFN 1;  1LTL A;  2PSM C;  1SMU A;  1VZI A;  2AYJ A;  3P8B A;  2ZIX A;  4LHL A;  2XJU A;  5AI3 A;  2XJV A;  1QCV A;  1ODH A;  4AR4 A;  3KYY A;  2PVX A;  2V3B B;  3QVD A;  3RZT A;  4POG A;  1R0I A;  3WWN B;  2CKC A;  1YUX A;  5DM6 1;  2M6P A;  1R0J A;  2A6E D;  1BRF A;  4AR6 A;  3RYG A;  1T9Q A;  1DVB A;  1IRO A;  1BQ9 A;  4TVM A;  2QL0 A;  2GMG A;  2PYA A;  2VL6 A;  2Z3R B;  1RDG A;  5DM7 1;  1VZG A;  2A69 D;  2CR8 A;  2XJQ A;  3WWL A;  5EIN C;  4JAE A;  5GAE c;  5MGN A;  1DX8 A;  1R0H A;  2M4V A;  2PVE A;  2MS3 A;  2V0E A;  4AI0 A;  1B2J A;  1YV1 A;  1VCX A;  3MSU A;  4AHY A;  5IY0 A;  3K35 A;  4GS7 D;  3PIP 1;  4JAG A;  4LHN A;  2ERJ A;  1RB9 A;  2XJS A;  2XJP A;  2HR5 A;  2NYD A;  3LNL A;  4B8C D;  1NNQ A;  1VZH A;  3IU3 I;  3QQC E;  1IU6 A;  3P2A A;  3B08 B;  3PIO 1;  2V0F A;  4AR5 A;  3KYV A;  1YUZ A;  1B2O A;  5MFZ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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