1HP1A

5'-nucleotidase (open form) complex with atp
Total Genus 180
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
180
sequence length
516
structure length
516
Chain Sequence
YEQDKTYKITVLHTNDHHGHFWRNEYGEYGLAAQKTLVDGIRKEVAAEGGSVLLLSGGDINTGVPESDLQDAEPDFRGMNLVGYDAMAIGNHEFDNPLTVLRQQEKWAKFPLLSANIYQKSTGERLFKPWALFKRQDLKIAVIGLTTDDTAKIGNPEYFTDIEFRKPADEAKLVIQELQQTEKPDIIIAATHMGHYDNGEHGSNAPGDVEMARALPAGSLAMIVGGHSQDPVCMAAENKKQVDYVPGTPCKPDQQNGIWIVQAHEWGKYVGRADFEFRNGEMKMVNYQLIPVNLKKKRVLYTPEIAENQQMISLLSPFQNKGKAQLEVKIGETNGRLEGDRDKVRFVQTNMGRLILAAQMDRTGADFAVMSGGGIRDSIEAGDISYKNVLKVQPFGNVVVYADMTGKEVIDYLTAVAQMKPDSGAYPQFANVSFVAKDGKLNDLKIKGEPVDPAKTYRMATLNFNATGGDGYPRLDNKPGYVNTGFIDAEVLKAYIQKSSPLDVSVYEPKGEVSWQ
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Hydrolase
molecule keywords 5'-NUCLEOTIDASE
publication title Mechanism of hydrolysis of phosphate esters by the dimetal center of 5'-nucleotidase based on crystal structures.
pubmed doi rcsb
source organism Escherichia coli
total genus 180
structure length 516
sequence length 516
ec nomenclature ec 3.1.3.5: 5'-nucleotidase.
pdb deposition date 2000-12-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00149 Metallophos Calcineurin-like phosphoesterase
A PF02872 5_nucleotid_C 5'-nucleotidase, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.60.21.10 Alpha Beta 4-Layer Sandwich Purple Acid Phosphatase; chain A, domain 2 Purple Acid Phosphatase; chain A, domain 2 1hp1A01
3.90.780.10 Alpha Beta Alpha-Beta Complex 5'-nucleotidase; domain 2 5'-Nucleotidase, C-terminal domain 1hp1A02
2IE4C 3E7BA 4TUIA 4YKEA 4F0ZA 3PSNA 2Z06A 4TUGA 4V0XA 1W24A 3EGGA 3CK2A 5JJTA 5J28A 1OIEA 4H2IA 3H66A 2YVTA 2IAEC 4H2FA 3C5WC 1HP1A 2HY1A 4IYPC 1AUIA 3QFKA 3IB8A 3V4YA 4MOVA 1SU1A 3LL8A 5INBA 2WDFA 2NPPC 3K7WC 3DSDA 2BQ8X 4JA9A 3THNA 4UWQA 3EGHA 3IVEA 3H61A 3N5UA 4G9JA 4I5LC 1Z2XA 3ZU0A 3QFMA 1U32A 1XM7A 2Z1AA 3K7VC 3HVQA 4ORBA 2NYLC 1IT6A 4B2OA 1WARA 4IL1A 3TGHA 4H2GA 3IVDA 3H62B 3ZTVA 4LU9A 3DW8C 4M0VA 4MOYA 5IOHA 4FBWA 1OI8A 5C1VA 4V0VA 4O24A 1S95A 2WDCA 2ZBMA 4O43A 4ZVZA 1T70A 2NYMC 1QFCA 4LTYA 4V0WA 4OR9A 1NNWA 4I5NC 2A22A 1USHA 1HPUA 1KBPA 4KKZA 3PSOA 4DHLA 4JA7A 1HO5A 4KBPA 4O4KA 3AV0A 4ORCA 4WWLA 4LACC 2AHDA 2USHA 2O8GA 5GTUA 1S8EA 2O8AA 1S3MA 3H69A 2HYOA 4H2BA 4UT3A 2R17A 2P6BA 4FCXA 3THOB 4DT2A 2KKNA 5EQVA 3T1IA 4H1SA 3RL4A 5JPFA 1T71A 3QFNA 1OIDA 2WDDA 3KBPA 2IE3C 5JPEA 1FJMA 2HYPA 3DSCA 2DFJA 1M63A 4UT3B 4UT2A 1S3LA 3IB7A 3RQZA 1MF8A 3H60A 4HD0A 2NXFA 1S70A 1XZWA 3QG5C 4Q7FA 2XMOA 3H67A 2CV9A 3JYFA 5F3WA 3ICFA 2Q8UA 1TCOA 3C9FA 5HPEA 1II7A 3AUZA 3QFOA 1S3NA 5B8IA 1UF3A 4DSYA 1UTEA 1QHWA 3RL3A 1WAO1 3E7AA 3H64A 3H63A 4FBKA 2GJUA 2QFPA 4O5GA 4MP0A 2JOGA 3P71C 2QFRA 1G5BA 4ORAA 4XPNA 4ZX2A 4H1YP 4NZVA 3FGAC 3GVEA 2BCDA 1Z2WA 3H68A 1V73A 1JK7A 2QJCA 2BDXA 2WDEA 4J6OA 5DNYA 4FBQA 2Z72A 3RL5A
chains in the Genus database with same CATH superfamily
2IE4C 3E7BA 4TUIA 4YKEA 4F0ZA 3PSNA 2Z06A 2ZOAA 4TUGA 4V0XA 1W24A 3EGGA 3CK2A 3FLOA 5JJTA 5J28A 1OIEA 4H2IA 3H66A 2YVTA 2IAEC 4H2FA 3C5WC 1HP1A 2HY1A 4IYPC 1AUIA 3QFKA 3IB8A 3V4YA 4MOVA 1SU1A 3LL8A 5INBA 2WDFA 2NPPC 3K7WC 3DSDA 2BQ8X 4JA9A 2DXLA 3E0JA 3EGHA 3IVEA 3H61A 3N5UA 4G9JA 4I5LC 1Z2XA 4UWQA 3ZU0A 3QFMA 1U32A 1XM7A 2Z1AA 3K7VC 3HVQA 4ORBA 2NYLC 1IT6A 4B2OA 1WARA 4IL1A 3TGHA 4H2GA 3IVDA 3H62B 3ZTVA 4LU9A 3DW8C 4M0VA 4MOYA 5IOHA 4FBWA 1OI8A 5C1VA 4V0VA 4O24A 1S95A 2WDCA 2ZBMA 4O43A 4ZVZA 1T70A 2NYMC 1QFCA 4LTYA 4V0WA 4OR9A 1NNWA 4I5NC 3THNA 2A22A 1USHA 1HPUA 1KBPA 2DXNA 4KKZA 3PSOA 4DHLA 4JA7A 1HO5A 4KBPA 4O4KA 3AV0A 4ORCA 4WWLA 4LACC 2AHDA 2USHA 2O8GA 5GTUA 1S8EA 2O8AA 1S3MA 3H69A 2HYOA 4H2BA 4UT3A 2R17A 2P6BA 4FCXA 3THOB 4DT2A 2KKNA 5EQVA 3T1IA 4H1SA 2YEQA 3RL4A 1T71A 5JPFA 3QFNA 1OIDA 2WDDA 3D03A 3KBPA 2IE3C 5JPEA 1FJMA 2HYPA 3DSCA 2DFJA 1M63A 4UT3B 4UT2A 1S3LA 3IB7A 3RQZA 1MF8A 3H60A 4HD0A 2NXFA 1S70A 1XZWA 3QG5C 4Q7FA 2XMOA 3H67A 2CV9A 3JYFA 5F3WA 3ICFA 2Q8UA 1TCOA 3C9FA 5HPEA 1II7A 3AUZA 3QFOA 1S3NA 5B8IA 1UF3A 4DSYA 1UTEA 1QHWA 3RL3A 1WAO1 3E7AA 3H64A 2ZO9B 3H63A 4FBKA 2GJUA 2QFPA 4O5GA 4MP0A 2JOGA 3P71C 2QFRA 1G5BA 4ORAA 4XPNA 4ZX2A 4H1YP 4NZVA 3FGAC 3GVEA 2BCDA 1Z2WA 3H68A 1V73A 1JK7A 2QJCA 2BDXA 2WDEA 4J6OA 5DNYA 4FBQA 2Z72A 3RL5A
chains in the Genus database with same CATH topology
2IE4C 3E7BA 4TUIA 4YKEA 4F0ZA 3PSNA 2Z06A 2ZOAA 4TUGA 4V0XA 1W24A 3EGGA 3CK2A 3FLOA 5JJTA 5J28A 1OIEA 4H2IA 3H66A 2YVTA 2IAEC 4H2FA 3C5WC 1HP1A 2HY1A 4IYPC 1AUIA 3QFKA 3IB8A 3V4YA 4MOVA 1SU1A 3LL8A 5INBA 2WDFA 2NPPC 3K7WC 3DSDA 2BQ8X 4JA9A 2DXLA 3E0JA 3EGHA 3IVEA 3H61A 3N5UA 4G9JA 4I5LC 1Z2XA 4UWQA 3ZU0A 3QFMA 1U32A 1XM7A 2Z1AA 3K7VC 3HVQA 4ORBA 2NYLC 1IT6A 4B2OA 1WARA 4IL1A 3TGHA 4H2GA 3IVDA 3H62B 3ZTVA 4LU9A 3DW8C 4M0VA 4MOYA 5IOHA 4FBWA 1OI8A 5C1VA 4V0VA 4O24A 1S95A 2WDCA 2ZBMA 4O43A 4ZVZA 1T70A 2NYMC 1QFCA 4LTYA 4V0WA 4OR9A 1NNWA 4I5NC 3THNA 2A22A 1USHA 1HPUA 1KBPA 2DXNA 4KKZA 3PSOA 4DHLA 4JA7A 1HO5A 4KBPA 4O4KA 3AV0A 4ORCA 4WWLA 4LACC 2AHDA 2USHA 2O8GA 5GTUA 1S8EA 2O8AA 1S3MA 3H69A 2HYOA 4H2BA 4UT3A 2R17A 2P6BA 4FCXA 3THOB 4DT2A 2KKNA 5EQVA 3T1IA 4H1SA 2YEQA 3RL4A 1T71A 5JPFA 3QFNA 1OIDA 2WDDA 3D03A 3KBPA 2IE3C 5JPEA 1FJMA 2HYPA 3DSCA 2DFJA 1M63A 4UT3B 4UT2A 1S3LA 3IB7A 3RQZA 1MF8A 3H60A 4HD0A 2NXFA 1S70A 1XZWA 3QG5C 4Q7FA 2XMOA 3H67A 2CV9A 3JYFA 5F3WA 3ICFA 2Q8UA 1TCOA 3C9FA 5HPEA 1II7A 3AUZA 3QFOA 1S3NA 5B8IA 1UF3A 4DSYA 1UTEA 1QHWA 3RL3A 1WAO1 3E7AA 3H64A 2ZO9B 3H63A 4FBKA 2GJUA 2QFPA 4O5GA 4MP0A 2JOGA 3P71C 2QFRA 1G5BA 4ORAA 4XPNA 4ZX2A 4H1YP 4NZVA 3FGAC 3GVEA 2BCDA 1Z2WA 3H68A 1V73A 1JK7A 2QJCA 2BDXA 2WDEA 4J6OA 5DNYA 4FBQA 2Z72A 3RL5A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2IE4 C;  3E7B A;  4TUI A;  4YKE A;  4F0Z A;  3PSN A;  2Z06 A;  4TUG A;  4V0X A;  1W24 A;  3EGG A;  3CK2 A;  5JJT A;  5J28 A;  1OIE A;  4H2I A;  3H66 A;  2YVT A;  2IAE C;  4H2F A;  3C5W C;  1HP1 A;  2HY1 A;  4IYP C;  1AUI A;  3QFK A;  3IB8 A;  3V4Y A;  4MOV A;  1SU1 A;  3LL8 A;  5INB A;  2WDF A;  2NPP C;  3K7W C;  3DSD A;  2BQ8 X;  4JA9 A;  3THN A;  4UWQ A;  3EGH A;  3IVE A;  3H61 A;  3N5U A;  4G9J A;  4I5L C;  1Z2X A;  3ZU0 A;  3QFM A;  1U32 A;  1XM7 A;  2Z1A A;  3K7V C;  3HVQ A;  4ORB A;  2NYL C;  1IT6 A;  4B2O A;  1WAR A;  4IL1 A;  3TGH A;  4H2G A;  3IVD A;  3H62 B;  3ZTV A;  4LU9 A;  3DW8 C;  4M0V A;  4MOY A;  5IOH A;  4FBW A;  1OI8 A;  5C1V A;  4V0V A;  4O24 A;  1S95 A;  2WDC A;  2ZBM A;  4O43 A;  4ZVZ A;  1T70 A;  2NYM C;  1QFC A;  4LTY A;  4V0W A;  4OR9 A;  1NNW A;  4I5N C;  2A22 A;  1USH A;  1HPU A;  1KBP A;  4KKZ A;  3PSO A;  4DHL A;  4JA7 A;  1HO5 A;  4KBP A;  4O4K A;  3AV0 A;  4ORC A;  4WWL A;  4LAC C;  2AHD A;  2USH A;  2O8G A;  5GTU A;  1S8E A;  2O8A A;  1S3M A;  3H69 A;  2HYO A;  4H2B A;  4UT3 A;  2R17 A;  2P6B A;  4FCX A;  3THO B;  4DT2 A;  2KKN A;  5EQV A;  3T1I A;  4H1S A;  3RL4 A;  5JPF A;  1T71 A;  3QFN A;  1OID A;  2WDD A;  3KBP A;  2IE3 C;  5JPE A;  1FJM A;  2HYP A;  3DSC A;  2DFJ A;  1M63 A;  4UT3 B;  4UT2 A;  1S3L A;  3IB7 A;  3RQZ A;  1MF8 A;  3H60 A;  4HD0 A;  2NXF A;  1S70 A;  1XZW A;  3QG5 C;  4Q7F A;  2XMO A;  3H67 A;  2CV9 A;  3JYF A;  5F3W A;  3ICF A;  2Q8U A;  1TCO A;  3C9F A;  5HPE A;  1II7 A;  3AUZ A;  3QFO A;  1S3N A;  5B8I A;  1UF3 A;  4DSY A;  1UTE A;  1QHW A;  3RL3 A;  1WAO 1;  3E7A A;  3H64 A;  3H63 A;  4FBK A;  2GJU A;  2QFP A;  4O5G A;  4MP0 A;  2JOG A;  3P71 C;  2QFR A;  1G5B A;  4ORA A;  4XPN A;  4ZX2 A;  4H1Y P;  4NZV A;  3FGA C;  3GVE A;  2BCD A;  1Z2W A;  3H68 A;  1V73 A;  1JK7 A;  2QJC A;  2BDX A;  2WDE A;  4J6O A;  5DNY A;  4FBQ A;  2Z72 A;  3RL5 A; 
#chains in the Genus database with same CATH topology
 2IE4 C;  3E7B A;  4TUI A;  4YKE A;  4F0Z A;  3PSN A;  2Z06 A;  2ZOA A;  4TUG A;  4V0X A;  1W24 A;  3EGG A;  3CK2 A;  3FLO A;  5JJT A;  5J28 A;  1OIE A;  4H2I A;  3H66 A;  2YVT A;  2IAE C;  4H2F A;  3C5W C;  1HP1 A;  2HY1 A;  4IYP C;  1AUI A;  3QFK A;  3IB8 A;  3V4Y A;  4MOV A;  1SU1 A;  3LL8 A;  5INB A;  2WDF A;  2NPP C;  3K7W C;  3DSD A;  2BQ8 X;  4JA9 A;  2DXL A;  3E0J A;  3EGH A;  3IVE A;  3H61 A;  3N5U A;  4G9J A;  4I5L C;  1Z2X A;  4UWQ A;  3ZU0 A;  3QFM A;  1U32 A;  1XM7 A;  2Z1A A;  3K7V C;  3HVQ A;  4ORB A;  2NYL C;  1IT6 A;  4B2O A;  1WAR A;  4IL1 A;  3TGH A;  4H2G A;  3IVD A;  3H62 B;  3ZTV A;  4LU9 A;  3DW8 C;  4M0V A;  4MOY A;  5IOH A;  4FBW A;  1OI8 A;  5C1V A;  4V0V A;  4O24 A;  1S95 A;  2WDC A;  2ZBM A;  4O43 A;  4ZVZ A;  1T70 A;  2NYM C;  1QFC A;  4LTY A;  4V0W A;  4OR9 A;  1NNW A;  4I5N C;  3THN A;  2A22 A;  1USH A;  1HPU A;  1KBP A;  2DXN A;  4KKZ A;  3PSO A;  4DHL A;  4JA7 A;  1HO5 A;  4KBP A;  4O4K A;  3AV0 A;  4ORC A;  4WWL A;  4LAC C;  2AHD A;  2USH A;  2O8G A;  5GTU A;  1S8E A;  2O8A A;  1S3M A;  3H69 A;  2HYO A;  4H2B A;  4UT3 A;  2R17 A;  2P6B A;  4FCX A;  3THO B;  4DT2 A;  2KKN A;  5EQV A;  3T1I A;  4H1S A;  2YEQ A;  3RL4 A;  1T71 A;  5JPF A;  3QFN A;  1OID A;  2WDD A;  3D03 A;  3KBP A;  2IE3 C;  5JPE A;  1FJM A;  2HYP A;  3DSC A;  2DFJ A;  1M63 A;  4UT3 B;  4UT2 A;  1S3L A;  3IB7 A;  3RQZ A;  1MF8 A;  3H60 A;  4HD0 A;  2NXF A;  1S70 A;  1XZW A;  3QG5 C;  4Q7F A;  2XMO A;  3H67 A;  2CV9 A;  3JYF A;  5F3W A;  3ICF A;  2Q8U A;  1TCO A;  3C9F A;  5HPE A;  1II7 A;  3AUZ A;  3QFO A;  1S3N A;  5B8I A;  1UF3 A;  4DSY A;  1UTE A;  1QHW A;  3RL3 A;  1WAO 1;  3E7A A;  3H64 A;  2ZO9 B;  3H63 A;  4FBK A;  2GJU A;  2QFP A;  4O5G A;  4MP0 A;  2JOG A;  3P71 C;  2QFR A;  1G5B A;  4ORA A;  4XPN A;  4ZX2 A;  4H1Y P;  4NZV A;  3FGA C;  3GVE A;  2BCD A;  1Z2W A;  3H68 A;  1V73 A;  1JK7 A;  2QJC A;  2BDX A;  2WDE A;  4J6O A;  5DNY A;  4FBQ A;  2Z72 A;  3RL5 A; 
#chains in the Genus database with same CATH homology
 2IE4 C;  3E7B A;  4TUI A;  4YKE A;  4F0Z A;  3PSN A;  2Z06 A;  2ZOA A;  4TUG A;  4V0X A;  1W24 A;  3EGG A;  3CK2 A;  3FLO A;  5JJT A;  5J28 A;  1OIE A;  4H2I A;  3H66 A;  2YVT A;  2IAE C;  4H2F A;  3C5W C;  1HP1 A;  2HY1 A;  4IYP C;  1AUI A;  3QFK A;  3IB8 A;  3V4Y A;  4MOV A;  1SU1 A;  3LL8 A;  5INB A;  2WDF A;  2NPP C;  3K7W C;  3DSD A;  2BQ8 X;  4JA9 A;  2DXL A;  3E0J A;  3EGH A;  3IVE A;  3H61 A;  3N5U A;  4G9J A;  4I5L C;  1Z2X A;  4UWQ A;  3ZU0 A;  3QFM A;  1U32 A;  1XM7 A;  2Z1A A;  3K7V C;  3HVQ A;  4ORB A;  2NYL C;  1IT6 A;  4B2O A;  1WAR A;  4IL1 A;  3TGH A;  4H2G A;  3IVD A;  3H62 B;  3ZTV A;  4LU9 A;  3DW8 C;  4M0V A;  4MOY A;  5IOH A;  4FBW A;  1OI8 A;  5C1V A;  4V0V A;  4O24 A;  1S95 A;  2WDC A;  2ZBM A;  4O43 A;  4ZVZ A;  1T70 A;  2NYM C;  1QFC A;  4LTY A;  4V0W A;  4OR9 A;  1NNW A;  4I5N C;  3THN A;  2A22 A;  1USH A;  1HPU A;  1KBP A;  2DXN A;  4KKZ A;  3PSO A;  4DHL A;  4JA7 A;  1HO5 A;  4KBP A;  4O4K A;  3AV0 A;  4ORC A;  4WWL A;  4LAC C;  2AHD A;  2USH A;  2O8G A;  5GTU A;  1S8E A;  2O8A A;  1S3M A;  3H69 A;  2HYO A;  4H2B A;  4UT3 A;  2R17 A;  2P6B A;  4FCX A;  3THO B;  4DT2 A;  2KKN A;  5EQV A;  3T1I A;  4H1S A;  2YEQ A;  3RL4 A;  1T71 A;  5JPF A;  3QFN A;  1OID A;  2WDD A;  3D03 A;  3KBP A;  2IE3 C;  5JPE A;  1FJM A;  2HYP A;  3DSC A;  2DFJ A;  1M63 A;  4UT3 B;  4UT2 A;  1S3L A;  3IB7 A;  3RQZ A;  1MF8 A;  3H60 A;  4HD0 A;  2NXF A;  1S70 A;  1XZW A;  3QG5 C;  4Q7F A;  2XMO A;  3H67 A;  2CV9 A;  3JYF A;  5F3W A;  3ICF A;  2Q8U A;  1TCO A;  3C9F A;  5HPE A;  1II7 A;  3AUZ A;  3QFO A;  1S3N A;  5B8I A;  1UF3 A;  4DSY A;  1UTE A;  1QHW A;  3RL3 A;  1WAO 1;  3E7A A;  3H64 A;  2ZO9 B;  3H63 A;  4FBK A;  2GJU A;  2QFP A;  4O5G A;  4MP0 A;  2JOG A;  3P71 C;  2QFR A;  1G5B A;  4ORA A;  4XPN A;  4ZX2 A;  4H1Y P;  4NZV A;  3FGA C;  3GVE A;  2BCD A;  1Z2W A;  3H68 A;  1V73 A;  1JK7 A;  2QJC A;  2BDX A;  2WDE A;  4J6O A;  5DNY A;  4FBQ A;  2Z72 A;  3RL5 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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