3N5UA

Crystal structure of an rb c-terminal peptide bound to the catalytic subunit of pp1
Total Genus 103
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
103
sequence length
294
structure length
294
Chain Sequence
LNLDSIIGRLLEVQGSRPGKNVQLTENEIRGLCLKSREIFLSQPILLELEAPLKICGDIHGQYYDLLRLFEYGGFPPESNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRYNIKLWKTFTDCFNCLPIAAIVDEKIFCCHGGLSPDLQSMEQIRRIMRPTDVPDQGLLCDLLWSDPDKDVQGWGENDRGVSFTFGAEVVAKFLHKHDLDLICRAHQVVEDGYEFFAKRQLVTLFSAPNYCGEFDNAGAMMSVDETLMCSFQILKPAD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase, transcription regulation
source organism Homo sapiens
publication title An overlapping kinase and phosphatase docking site regulates activity of the retinoblastoma protein.
pubmed doi rcsb
molecule keywords Serine/threonine-protein phosphatase PP1-alpha catalytic sub
total genus 103
structure length 294
sequence length 294
chains with identical sequence B
ec nomenclature ec 3.1.3.16: Protein-serine/threonine phosphatase.
pdb deposition date 2010-05-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00149 Metallophos Calcineurin-like phosphoesterase
A PF16891 STPPase_N Serine-threonine protein phosphatase N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.60.21.10 Alpha Beta 4-Layer Sandwich Purple Acid Phosphatase; chain A, domain 2 Purple Acid Phosphatase; chain A, domain 2 3n5uA00
2R17A 1OIEA 2WDCA 1USHA 2QFPA 1AUIA 4H1YP 4O24A 4ORCA 3DSDA 3THNA 1V73A 1JK7A 2IE4C 3E7AA 3N5UA 2BQ8X 2NPPC 1II7A 5J28A 1KBPA 1MF8A 3QG5C 1S3LA 3K7VC 3H67A 2WDEA 1HO5A 4FCXA 3KBPA 4NZVA 2ZBMA 4V0XA 4DSYA 2KKNA 4ORBA 1NNWA 2NYMC 1HP1A 4KBPA 1WAO1 4TUGA 4I5LC 1XZWA 4H1SA 4UWQA 3ICFA 4OR9A 4DT2A 5JPEA 1OI8A 2GJUA 4LTYA 1S95A 3PSOA 4UT3A 3T1IA 1S3MA 3E7BA 3H64A 4XPNA 4UT2A 4F0ZA 2P6BA 3H63A 4IL1A 4JA9A 2NXFA 1S3NA 1Z2XA 4MOVA 2Z1AA 3H62B 4O43A 3DW8C 3THOB 5B8IA 1QHWA 2AHDA 4UT3B 1U32A 3C9FA 2IAEC 2USHA 3H60A 3ZTVA 2HYPA 1W24A 1Z2WA 3AV0A 1TCOA 1WARA 3H66A 3PSNA 3RL5A 1HPUA 3QFKA 4B2OA 3RL3A 3K7WC 3RQZA 1QFCA 3TGHA 1XM7A 1UF3A 1OIDA 3GVEA 2WDDA 1G5BA 1T71A 3IVDA 2WDFA 4FBQA 3QFOA 4ZVZA 2HYOA 2NYLC 3EGGA 3H69A 2BDXA 2Z72A 3P71C 3DSCA 5IOHA 2YVTA 4H2BA 5GTUA 4ZX2A 4V0VA 4J6OA 4I5NC 5JJTA 4HD0A 5C1VA 3C5WC 1UTEA 2A22A 4MOYA 3QFMA 4FBWA 4YKEA 4H2FA 3EGHA 4JA7A 5DNYA 3IVEA 2QJCA 3RL4A 3QFNA 4ORAA 2XMOA 4O4KA 4TUIA 3IB7A 4KKZA 5F3WA 3JYFA 4WWLA 3IB8A 3ZU0A 3LL8A 4O5GA 5HPEA 3H68A 4MP0A 3H61A 2Q8UA 3CK2A 3FGAC 5INBA 2HY1A 2BCDA 2QFRA 4V0WA 1S8EA 5JPFA 1T70A 1M63A 2DFJA 3HVQA 4FBKA 4LU9A 4LACC 1S70A 4IYPC 4H2IA 4Q7FA 1FJMA 2O8GA 2O8AA 2CV9A 5EQVA 2JOGA 1IT6A 3AUZA 3V4YA 4DHLA 4G9JA 2IE3C 4M0VA 4H2GA 1SU1A 2Z06A
chains in the Genus database with same CATH superfamily
2R17A 1OIEA 2WDCA 1USHA 2QFPA 1AUIA 4H1YP 4O24A 4ORCA 3DSDA 3THNA 1V73A 1JK7A 2IE4C 3E7AA 3N5UA 2BQ8X 2NPPC 1II7A 5J28A 1KBPA 1MF8A 3QG5C 1S3LA 3K7VC 3H67A 2WDEA 1HO5A 4FCXA 3KBPA 4NZVA 2ZBMA 3FLOA 4V0XA 4DSYA 2KKNA 3E0JA 4ORBA 1NNWA 2NYMC 1HP1A 4KBPA 1WAO1 4TUGA 4I5LC 1XZWA 4H1SA 4UWQA 3ICFA 4OR9A 4DT2A 5JPEA 1OI8A 2GJUA 4LTYA 1S95A 3PSOA 4UT3A 3T1IA 1S3MA 3E7BA 3H64A 4XPNA 4UT2A 4F0ZA 2DXNA 2P6BA 3H63A 4IL1A 4JA9A 2NXFA 1S3NA 1Z2XA 4MOVA 2Z1AA 3H62B 4O43A 3DW8C 3D03A 2ZOAA 3THOB 5B8IA 1QHWA 2AHDA 4UT3B 1U32A 3C9FA 2IAEC 2USHA 3H60A 3ZTVA 2HYPA 1W24A 1Z2WA 3AV0A 1TCOA 1WARA 3H66A 3PSNA 3RL5A 1HPUA 3QFKA 4B2OA 3RL3A 3K7WC 3RQZA 1QFCA 3TGHA 1XM7A 1UF3A 1OIDA 3GVEA 2WDDA 1G5BA 1T71A 3IVDA 2WDFA 4FBQA 3QFOA 4ZVZA 2HYOA 2NYLC 3EGGA 3H69A 2BDXA 2Z72A 3P71C 3DSCA 5IOHA 2YVTA 4H2BA 5GTUA 4ZX2A 4V0VA 4J6OA 4I5NC 5JJTA 4HD0A 5C1VA 3C5WC 1UTEA 2A22A 4MOYA 3QFMA 4FBWA 4YKEA 4H2FA 3EGHA 4JA7A 5DNYA 3IVEA 2QJCA 3RL4A 3QFNA 4ORAA 2XMOA 4O4KA 4TUIA 3IB7A 4KKZA 5F3WA 3JYFA 4WWLA 3IB8A 3ZU0A 3LL8A 4O5GA 5HPEA 3H68A 4MP0A 3H61A 2Q8UA 3CK2A 2ZO9B 3FGAC 5INBA 2HY1A 2BCDA 2QFRA 4V0WA 1S8EA 5JPFA 1T70A 2DXLA 1M63A 2DFJA 3HVQA 4FBKA 4LU9A 4LACC 1S70A 4IYPC 4H2IA 4Q7FA 1FJMA 2YEQA 2O8GA 2O8AA 2CV9A 5EQVA 2JOGA 1IT6A 3AUZA 3V4YA 4DHLA 4G9JA 2IE3C 4M0VA 4H2GA 1SU1A 2Z06A
chains in the Genus database with same CATH topology
2R17A 1OIEA 2WDCA 1USHA 2QFPA 1AUIA 4H1YP 4O24A 4ORCA 3DSDA 3THNA 1V73A 1JK7A 2IE4C 3E7AA 3N5UA 2BQ8X 2NPPC 1II7A 5J28A 1KBPA 1MF8A 3QG5C 1S3LA 3K7VC 3H67A 2WDEA 1HO5A 4FCXA 3KBPA 4NZVA 2ZBMA 3FLOA 4V0XA 4DSYA 2KKNA 3E0JA 4ORBA 1NNWA 2NYMC 1HP1A 4KBPA 1WAO1 4TUGA 4I5LC 1XZWA 4H1SA 4UWQA 3ICFA 4OR9A 4DT2A 5JPEA 1OI8A 2GJUA 4LTYA 1S95A 3PSOA 4UT3A 3T1IA 1S3MA 3E7BA 3H64A 4XPNA 4UT2A 4F0ZA 2DXNA 2P6BA 3H63A 4IL1A 4JA9A 2NXFA 1S3NA 1Z2XA 4MOVA 2Z1AA 3H62B 4O43A 3DW8C 3D03A 2ZOAA 3THOB 5B8IA 1QHWA 2AHDA 4UT3B 1U32A 3C9FA 2IAEC 2USHA 3H60A 3ZTVA 2HYPA 1W24A 1Z2WA 3AV0A 1TCOA 1WARA 3H66A 3PSNA 3RL5A 1HPUA 3QFKA 4B2OA 3RL3A 3K7WC 3RQZA 1QFCA 3TGHA 1XM7A 1UF3A 1OIDA 3GVEA 2WDDA 1G5BA 1T71A 3IVDA 2WDFA 4FBQA 3QFOA 4ZVZA 2HYOA 2NYLC 3EGGA 3H69A 2BDXA 2Z72A 3P71C 3DSCA 5IOHA 2YVTA 4H2BA 5GTUA 4ZX2A 4V0VA 4J6OA 4I5NC 5JJTA 4HD0A 5C1VA 3C5WC 1UTEA 2A22A 4MOYA 3QFMA 4FBWA 4YKEA 4H2FA 3EGHA 4JA7A 5DNYA 3IVEA 2QJCA 3RL4A 3QFNA 4ORAA 2XMOA 4O4KA 4TUIA 3IB7A 4KKZA 5F3WA 3JYFA 4WWLA 3IB8A 3ZU0A 3LL8A 4O5GA 5HPEA 3H68A 4MP0A 3H61A 2Q8UA 3CK2A 2ZO9B 3FGAC 5INBA 2HY1A 2BCDA 2QFRA 4V0WA 1S8EA 5JPFA 1T70A 2DXLA 1M63A 2DFJA 3HVQA 4FBKA 4LU9A 4LACC 1S70A 4IYPC 4H2IA 4Q7FA 1FJMA 2YEQA 2O8GA 2O8AA 2CV9A 5EQVA 2JOGA 1IT6A 3AUZA 3V4YA 4DHLA 4G9JA 2IE3C 4M0VA 4H2GA 1SU1A 2Z06A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2R17 A;  1OIE A;  2WDC A;  1USH A;  2QFP A;  1AUI A;  4H1Y P;  4O24 A;  4ORC A;  3DSD A;  3THN A;  1V73 A;  1JK7 A;  2IE4 C;  3E7A A;  3N5U A;  2BQ8 X;  2NPP C;  1II7 A;  5J28 A;  1KBP A;  1MF8 A;  3QG5 C;  1S3L A;  3K7V C;  3H67 A;  2WDE A;  1HO5 A;  4FCX A;  3KBP A;  4NZV A;  2ZBM A;  4V0X A;  4DSY A;  2KKN A;  4ORB A;  1NNW A;  2NYM C;  1HP1 A;  4KBP A;  1WAO 1;  4TUG A;  4I5L C;  1XZW A;  4H1S A;  4UWQ A;  3ICF A;  4OR9 A;  4DT2 A;  5JPE A;  1OI8 A;  2GJU A;  4LTY A;  1S95 A;  3PSO A;  4UT3 A;  3T1I A;  1S3M A;  3E7B A;  3H64 A;  4XPN A;  4UT2 A;  4F0Z A;  2P6B A;  3H63 A;  4IL1 A;  4JA9 A;  2NXF A;  1S3N A;  1Z2X A;  4MOV A;  2Z1A A;  3H62 B;  4O43 A;  3DW8 C;  3THO B;  5B8I A;  1QHW A;  2AHD A;  4UT3 B;  1U32 A;  3C9F A;  2IAE C;  2USH A;  3H60 A;  3ZTV A;  2HYP A;  1W24 A;  1Z2W A;  3AV0 A;  1TCO A;  1WAR A;  3H66 A;  3PSN A;  3RL5 A;  1HPU A;  3QFK A;  4B2O A;  3RL3 A;  3K7W C;  3RQZ A;  1QFC A;  3TGH A;  1XM7 A;  1UF3 A;  1OID A;  3GVE A;  2WDD A;  1G5B A;  1T71 A;  3IVD A;  2WDF A;  4FBQ A;  3QFO A;  4ZVZ A;  2HYO A;  2NYL C;  3EGG A;  3H69 A;  2BDX A;  2Z72 A;  3P71 C;  3DSC A;  5IOH A;  2YVT A;  4H2B A;  5GTU A;  4ZX2 A;  4V0V A;  4J6O A;  4I5N C;  5JJT A;  4HD0 A;  5C1V A;  3C5W C;  1UTE A;  2A22 A;  4MOY A;  3QFM A;  4FBW A;  4YKE A;  4H2F A;  3EGH A;  4JA7 A;  5DNY A;  3IVE A;  2QJC A;  3RL4 A;  3QFN A;  4ORA A;  2XMO A;  4O4K A;  4TUI A;  3IB7 A;  4KKZ A;  5F3W A;  3JYF A;  4WWL A;  3IB8 A;  3ZU0 A;  3LL8 A;  4O5G A;  5HPE A;  3H68 A;  4MP0 A;  3H61 A;  2Q8U A;  3CK2 A;  3FGA C;  5INB A;  2HY1 A;  2BCD A;  2QFR A;  4V0W A;  1S8E A;  5JPF A;  1T70 A;  1M63 A;  2DFJ A;  3HVQ A;  4FBK A;  4LU9 A;  4LAC C;  1S70 A;  4IYP C;  4H2I A;  4Q7F A;  1FJM A;  2O8G A;  2O8A A;  2CV9 A;  5EQV A;  2JOG A;  1IT6 A;  3AUZ A;  3V4Y A;  4DHL A;  4G9J A;  2IE3 C;  4M0V A;  4H2G A;  1SU1 A;  2Z06 A; 
#chains in the Genus database with same CATH topology
 2R17 A;  1OIE A;  2WDC A;  1USH A;  2QFP A;  1AUI A;  4H1Y P;  4O24 A;  4ORC A;  3DSD A;  3THN A;  1V73 A;  1JK7 A;  2IE4 C;  3E7A A;  3N5U A;  2BQ8 X;  2NPP C;  1II7 A;  5J28 A;  1KBP A;  1MF8 A;  3QG5 C;  1S3L A;  3K7V C;  3H67 A;  2WDE A;  1HO5 A;  4FCX A;  3KBP A;  4NZV A;  2ZBM A;  3FLO A;  4V0X A;  4DSY A;  2KKN A;  3E0J A;  4ORB A;  1NNW A;  2NYM C;  1HP1 A;  4KBP A;  1WAO 1;  4TUG A;  4I5L C;  1XZW A;  4H1S A;  4UWQ A;  3ICF A;  4OR9 A;  4DT2 A;  5JPE A;  1OI8 A;  2GJU A;  4LTY A;  1S95 A;  3PSO A;  4UT3 A;  3T1I A;  1S3M A;  3E7B A;  3H64 A;  4XPN A;  4UT2 A;  4F0Z A;  2DXN A;  2P6B A;  3H63 A;  4IL1 A;  4JA9 A;  2NXF A;  1S3N A;  1Z2X A;  4MOV A;  2Z1A A;  3H62 B;  4O43 A;  3DW8 C;  3D03 A;  2ZOA A;  3THO B;  5B8I A;  1QHW A;  2AHD A;  4UT3 B;  1U32 A;  3C9F A;  2IAE C;  2USH A;  3H60 A;  3ZTV A;  2HYP A;  1W24 A;  1Z2W A;  3AV0 A;  1TCO A;  1WAR A;  3H66 A;  3PSN A;  3RL5 A;  1HPU A;  3QFK A;  4B2O A;  3RL3 A;  3K7W C;  3RQZ A;  1QFC A;  3TGH A;  1XM7 A;  1UF3 A;  1OID A;  3GVE A;  2WDD A;  1G5B A;  1T71 A;  3IVD A;  2WDF A;  4FBQ A;  3QFO A;  4ZVZ A;  2HYO A;  2NYL C;  3EGG A;  3H69 A;  2BDX A;  2Z72 A;  3P71 C;  3DSC A;  5IOH A;  2YVT A;  4H2B A;  5GTU A;  4ZX2 A;  4V0V A;  4J6O A;  4I5N C;  5JJT A;  4HD0 A;  5C1V A;  3C5W C;  1UTE A;  2A22 A;  4MOY A;  3QFM A;  4FBW A;  4YKE A;  4H2F A;  3EGH A;  4JA7 A;  5DNY A;  3IVE A;  2QJC A;  3RL4 A;  3QFN A;  4ORA A;  2XMO A;  4O4K A;  4TUI A;  3IB7 A;  4KKZ A;  5F3W A;  3JYF A;  4WWL A;  3IB8 A;  3ZU0 A;  3LL8 A;  4O5G A;  5HPE A;  3H68 A;  4MP0 A;  3H61 A;  2Q8U A;  3CK2 A;  2ZO9 B;  3FGA C;  5INB A;  2HY1 A;  2BCD A;  2QFR A;  4V0W A;  1S8E A;  5JPF A;  1T70 A;  2DXL A;  1M63 A;  2DFJ A;  3HVQ A;  4FBK A;  4LU9 A;  4LAC C;  1S70 A;  4IYP C;  4H2I A;  4Q7F A;  1FJM A;  2YEQ A;  2O8G A;  2O8A A;  2CV9 A;  5EQV A;  2JOG A;  1IT6 A;  3AUZ A;  3V4Y A;  4DHL A;  4G9J A;  2IE3 C;  4M0V A;  4H2G A;  1SU1 A;  2Z06 A; 
#chains in the Genus database with same CATH homology
 2R17 A;  1OIE A;  2WDC A;  1USH A;  2QFP A;  1AUI A;  4H1Y P;  4O24 A;  4ORC A;  3DSD A;  3THN A;  1V73 A;  1JK7 A;  2IE4 C;  3E7A A;  3N5U A;  2BQ8 X;  2NPP C;  1II7 A;  5J28 A;  1KBP A;  1MF8 A;  3QG5 C;  1S3L A;  3K7V C;  3H67 A;  2WDE A;  1HO5 A;  4FCX A;  3KBP A;  4NZV A;  2ZBM A;  3FLO A;  4V0X A;  4DSY A;  2KKN A;  3E0J A;  4ORB A;  1NNW A;  2NYM C;  1HP1 A;  4KBP A;  1WAO 1;  4TUG A;  4I5L C;  1XZW A;  4H1S A;  4UWQ A;  3ICF A;  4OR9 A;  4DT2 A;  5JPE A;  1OI8 A;  2GJU A;  4LTY A;  1S95 A;  3PSO A;  4UT3 A;  3T1I A;  1S3M A;  3E7B A;  3H64 A;  4XPN A;  4UT2 A;  4F0Z A;  2DXN A;  2P6B A;  3H63 A;  4IL1 A;  4JA9 A;  2NXF A;  1S3N A;  1Z2X A;  4MOV A;  2Z1A A;  3H62 B;  4O43 A;  3DW8 C;  3D03 A;  2ZOA A;  3THO B;  5B8I A;  1QHW A;  2AHD A;  4UT3 B;  1U32 A;  3C9F A;  2IAE C;  2USH A;  3H60 A;  3ZTV A;  2HYP A;  1W24 A;  1Z2W A;  3AV0 A;  1TCO A;  1WAR A;  3H66 A;  3PSN A;  3RL5 A;  1HPU A;  3QFK A;  4B2O A;  3RL3 A;  3K7W C;  3RQZ A;  1QFC A;  3TGH A;  1XM7 A;  1UF3 A;  1OID A;  3GVE A;  2WDD A;  1G5B A;  1T71 A;  3IVD A;  2WDF A;  4FBQ A;  3QFO A;  4ZVZ A;  2HYO A;  2NYL C;  3EGG A;  3H69 A;  2BDX A;  2Z72 A;  3P71 C;  3DSC A;  5IOH A;  2YVT A;  4H2B A;  5GTU A;  4ZX2 A;  4V0V A;  4J6O A;  4I5N C;  5JJT A;  4HD0 A;  5C1V A;  3C5W C;  1UTE A;  2A22 A;  4MOY A;  3QFM A;  4FBW A;  4YKE A;  4H2F A;  3EGH A;  4JA7 A;  5DNY A;  3IVE A;  2QJC A;  3RL4 A;  3QFN A;  4ORA A;  2XMO A;  4O4K A;  4TUI A;  3IB7 A;  4KKZ A;  5F3W A;  3JYF A;  4WWL A;  3IB8 A;  3ZU0 A;  3LL8 A;  4O5G A;  5HPE A;  3H68 A;  4MP0 A;  3H61 A;  2Q8U A;  3CK2 A;  2ZO9 B;  3FGA C;  5INB A;  2HY1 A;  2BCD A;  2QFR A;  4V0W A;  1S8E A;  5JPF A;  1T70 A;  2DXL A;  1M63 A;  2DFJ A;  3HVQ A;  4FBK A;  4LU9 A;  4LAC C;  1S70 A;  4IYP C;  4H2I A;  4Q7F A;  1FJM A;  2YEQ A;  2O8G A;  2O8A A;  2CV9 A;  5EQV A;  2JOG A;  1IT6 A;  3AUZ A;  3V4Y A;  4DHL A;  4G9J A;  2IE3 C;  4M0V A;  4H2G A;  1SU1 A;  2Z06 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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