3N5UA

Crystal structure of an rb c-terminal peptide bound to the catalytic subunit of pp1
Total Genus 103
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
103
sequence length
294
structure length
294
Chain Sequence
b'LNLDSIIGRLLEVQGSRPGKNVQLTENEIRGLCLKSREIFLSQPILLELEAPLKICGDIHGQYYDLLRLFEYGGFPPESNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRYNIKLWKTFTDCFNCLPIAAIVDEKIFCCHGGLSPDLQSMEQIRRIMRPTDVPDQGLLCDLLWSDPDKDVQGWGENDRGVSFTFGAEVVAKFLHKHDLDLICRAHQVVEDGYEFFAKRQLVTLFSAPNYCGEFDNAGAMMSVDETLMCSFQILKPAD'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title An overlapping kinase and phosphatase docking site regulates activity of the retinoblastoma protein.
pubmed doi rcsb
molecule keywords Serine/threonine-protein phosphatase PP1-alpha catalytic sub
source organism Homo sapiens
molecule tags Hydrolase, transcription regulation
total genus 103
structure length 294
sequence length 294
chains with identical sequence B
ec nomenclature ec 3.1.3.16: Protein-serine/threonine phosphatase.
pdb deposition date 2010-05-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00149 Metallophos Calcineurin-like phosphoesterase
A PF16891 STPPase_N Serine-threonine protein phosphatase N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.60.21.10 Alpha Beta 4-Layer Sandwich Purple Acid Phosphatase; chain A, domain 2 Purple Acid Phosphatase; chain A, domain 2 3n5uA00
3H62B 3GVEA 1WARA 1S95A 4DSYA 1G5BA 3P71C 1S8EA 1WAO1 1V73A 1S70A 5EQVA 4B2OA 3H63A 4UT3A 3AUZA 4H2GA 1JK7A 4ORCA 3H61A 1MF8A 4MOVA 2Z72A 1UF3A 1NNWA 4HD0A 2HYOA 2QFRA 4JA9A 2IE3C 3E7BA 3HVQA 1S3MA 2YVTA 2HY1A 2QJCA 1QHWA 3AV0A 3QFKA 4Q7FA 4F0ZA 1S3LA 1W24A 4H1SA 1UTEA 3QFNA 4LACC 2NYLC 3IVEA 1FJMA 3LL8A 4ZVZA 2CV9A 4M0VA 2O8AA 2NXFA 3CK2A 4UT2A 4TUGA 2JOGA 2O8GA 2IAEC 1HO5A 4FBQA 3KBPA 3THOB 2WDDA 4V0VA 3H64A 1IT6A 4NZVA 4I5NC 1T70A 2R17A 1OI8A 1T71A 3E7AA 1HP1A 5INBA 4O43A 2HYPA 4H1YP 4G9JA 5JPFA 4IYPC 3PSNA 4LTYA 3H60A 3H68A 3RL3A 3K7VC 4DHLA 2WDEA 5GTUA 4DT2A 1QFCA 5JJTA 4V0XA 2DFJA 1USHA 2BQ8X 3DSCA 4V0WA 1TCOA 3IVDA 4H2FA 5IOHA 2XMOA 4KBPA 2KKNA 4H2BA 1OIEA 2A22A 4ZX2A 1XZWA 2QFPA 3QFOA 4ORBA 2Z06A 4UT3B 4O24A 5J28A 1S3NA 3T1IA 3FGAC 3H66A 1SU1A 3K7WC 3ZU0A 4KKZA 2WDFA 3RQZA 4FBKA 3PSOA 3IB7A 4JA7A 2BDXA 2P6BA 1U32A 3DW8C 4YKEA 3DSDA 1XM7A 4I5LC 4TUIA 2IE4C 5B8IA 3IB8A 1Z2WA 2Q8UA 3QG5C 4O4KA 3THNA 4WWLA 3RL4A 3JYFA 5DNYA 5HPEA 4MOYA 2ZBMA 4ORAA 3RL5A 2Z1AA 4O5GA 3ZTVA 3EGHA 3H69A 3QFMA 4FCXA 4MP0A 4H2IA 1HPUA 2GJUA 5F3WA 3C5WC 5JPEA 3H67A 2NPPC 1II7A 3C9FA 4OR9A 1KBPA 1OIDA 2AHDA 1Z2XA 4LU9A 3V4YA 4IL1A 1AUIA 3N5UA 4XPNA 5C1VA 4UWQA 1M63A 2WDCA 3EGGA 2BCDA 3ICFA 3TGHA 4J6OA 2NYMC 4FBWA 2USHA
chains in the Genus database with same CATH superfamily
3H62B 3GVEA 1WARA 1S95A 4DSYA 1G5BA 3P71C 1S8EA 1WAO1 1V73A 1S70A 5EQVA 4B2OA 3H63A 4UT3A 3AUZA 4H2GA 2YEQA 1JK7A 3D03A 4ORCA 3H61A 1MF8A 4MOVA 2Z72A 1UF3A 1NNWA 4HD0A 2HYOA 2QFRA 4JA9A 2IE3C 3E7BA 3HVQA 1S3MA 2YVTA 2HY1A 2QJCA 1QHWA 3AV0A 3QFKA 4Q7FA 4F0ZA 1S3LA 1W24A 4H1SA 1UTEA 3QFNA 4LACC 2NYLC 3IVEA 1FJMA 3LL8A 4ZVZA 2CV9A 4M0VA 2O8AA 2NXFA 3CK2A 4UT2A 4TUGA 2JOGA 2O8GA 2IAEC 1HO5A 4FBQA 3KBPA 3THOB 2WDDA 4V0VA 3H64A 1IT6A 4NZVA 2DXNA 4I5NC 1T70A 2R17A 1OI8A 1T71A 3E7AA 1HP1A 5INBA 4O43A 2HYPA 4H1YP 4G9JA 5JPFA 3FLOA 4IYPC 3PSNA 4LTYA 3H60A 3H68A 3RL3A 3K7VC 4DHLA 2WDEA 5GTUA 4DT2A 1QFCA 5JJTA 4V0XA 2DFJA 2ZO9B 1USHA 2DXLA 2BQ8X 3DSCA 4V0WA 1TCOA 3IVDA 4H2FA 5IOHA 2XMOA 4KBPA 2KKNA 4H2BA 1OIEA 2A22A 3E0JA 4ZX2A 1XZWA 2QFPA 3QFOA 4ORBA 2Z06A 4UT3B 4O24A 5J28A 1S3NA 3T1IA 3FGAC 3H66A 1SU1A 3K7WC 3ZU0A 4KKZA 2WDFA 3RQZA 4FBKA 3PSOA 3IB7A 4JA7A 2BDXA 2P6BA 1U32A 3DW8C 4YKEA 3DSDA 1XM7A 4I5LC 4TUIA 2IE4C 5B8IA 3IB8A 1Z2WA 2Q8UA 2ZOAA 3QG5C 4O4KA 3THNA 4WWLA 3RL4A 3JYFA 5DNYA 5HPEA 4MOYA 2ZBMA 4ORAA 3RL5A 2Z1AA 4O5GA 3ZTVA 3EGHA 3H69A 3QFMA 4FCXA 4MP0A 4H2IA 1HPUA 2GJUA 5F3WA 3C5WC 5JPEA 3H67A 2NPPC 1II7A 3C9FA 4OR9A 1KBPA 1OIDA 2AHDA 1Z2XA 4LU9A 3V4YA 4IL1A 1AUIA 3N5UA 4XPNA 5C1VA 4UWQA 1M63A 2WDCA 3EGGA 2BCDA 3ICFA 3TGHA 4J6OA 2NYMC 4FBWA 2USHA
chains in the Genus database with same CATH topology
3H62B 3GVEA 1WARA 1S95A 4DSYA 1G5BA 3P71C 1S8EA 1WAO1 1V73A 1S70A 5EQVA 4B2OA 3H63A 4UT3A 3AUZA 4H2GA 2YEQA 1JK7A 3D03A 4ORCA 3H61A 1MF8A 4MOVA 2Z72A 1UF3A 1NNWA 4HD0A 2HYOA 2QFRA 4JA9A 2IE3C 3E7BA 3HVQA 1S3MA 2YVTA 2HY1A 2QJCA 1QHWA 3AV0A 3QFKA 4Q7FA 4F0ZA 1S3LA 1W24A 4H1SA 1UTEA 3QFNA 4LACC 2NYLC 3IVEA 1FJMA 3LL8A 4ZVZA 2CV9A 4M0VA 2O8AA 2NXFA 3CK2A 4UT2A 4TUGA 2JOGA 2O8GA 2IAEC 1HO5A 4FBQA 3KBPA 3THOB 2WDDA 4V0VA 3H64A 1IT6A 4NZVA 2DXNA 4I5NC 1T70A 2R17A 1OI8A 1T71A 3E7AA 1HP1A 5INBA 4O43A 2HYPA 4H1YP 4G9JA 5JPFA 3FLOA 4IYPC 3PSNA 4LTYA 3H60A 3H68A 3RL3A 3K7VC 4DHLA 2WDEA 5GTUA 4DT2A 1QFCA 5JJTA 4V0XA 2DFJA 2ZO9B 1USHA 2DXLA 2BQ8X 3DSCA 4V0WA 1TCOA 3IVDA 4H2FA 5IOHA 2XMOA 4KBPA 2KKNA 4H2BA 1OIEA 2A22A 3E0JA 4ZX2A 1XZWA 2QFPA 3QFOA 4ORBA 2Z06A 4UT3B 4O24A 5J28A 1S3NA 3T1IA 3FGAC 3H66A 1SU1A 3K7WC 3ZU0A 4KKZA 2WDFA 3RQZA 4FBKA 3PSOA 3IB7A 4JA7A 2BDXA 2P6BA 1U32A 3DW8C 4YKEA 3DSDA 1XM7A 4I5LC 4TUIA 2IE4C 5B8IA 3IB8A 1Z2WA 2Q8UA 2ZOAA 3QG5C 4O4KA 3THNA 4WWLA 3RL4A 3JYFA 5DNYA 5HPEA 4MOYA 2ZBMA 4ORAA 3RL5A 2Z1AA 4O5GA 3ZTVA 3EGHA 3H69A 3QFMA 4FCXA 4MP0A 4H2IA 1HPUA 2GJUA 5F3WA 3C5WC 5JPEA 3H67A 2NPPC 1II7A 3C9FA 4OR9A 1KBPA 1OIDA 2AHDA 1Z2XA 4LU9A 3V4YA 4IL1A 1AUIA 3N5UA 4XPNA 5C1VA 4UWQA 1M63A 2WDCA 3EGGA 2BCDA 3ICFA 3TGHA 4J6OA 2NYMC 4FBWA 2USHA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3H62 B;  3GVE A;  1WAR A;  1S95 A;  4DSY A;  1G5B A;  3P71 C;  1S8E A;  1WAO 1;  1V73 A;  1S70 A;  5EQV A;  4B2O A;  3H63 A;  4UT3 A;  3AUZ A;  4H2G A;  1JK7 A;  4ORC A;  3H61 A;  1MF8 A;  4MOV A;  2Z72 A;  1UF3 A;  1NNW A;  4HD0 A;  2HYO A;  2QFR A;  4JA9 A;  2IE3 C;  3E7B A;  3HVQ A;  1S3M A;  2YVT A;  2HY1 A;  2QJC A;  1QHW A;  3AV0 A;  3QFK A;  4Q7F A;  4F0Z A;  1S3L A;  1W24 A;  4H1S A;  1UTE A;  3QFN A;  4LAC C;  2NYL C;  3IVE A;  1FJM A;  3LL8 A;  4ZVZ A;  2CV9 A;  4M0V A;  2O8A A;  2NXF A;  3CK2 A;  4UT2 A;  4TUG A;  2JOG A;  2O8G A;  2IAE C;  1HO5 A;  4FBQ A;  3KBP A;  3THO B;  2WDD A;  4V0V A;  3H64 A;  1IT6 A;  4NZV A;  4I5N C;  1T70 A;  2R17 A;  1OI8 A;  1T71 A;  3E7A A;  1HP1 A;  5INB A;  4O43 A;  2HYP A;  4H1Y P;  4G9J A;  5JPF A;  4IYP C;  3PSN A;  4LTY A;  3H60 A;  3H68 A;  3RL3 A;  3K7V C;  4DHL A;  2WDE A;  5GTU A;  4DT2 A;  1QFC A;  5JJT A;  4V0X A;  2DFJ A;  1USH A;  2BQ8 X;  3DSC A;  4V0W A;  1TCO A;  3IVD A;  4H2F A;  5IOH A;  2XMO A;  4KBP A;  2KKN A;  4H2B A;  1OIE A;  2A22 A;  4ZX2 A;  1XZW A;  2QFP A;  3QFO A;  4ORB A;  2Z06 A;  4UT3 B;  4O24 A;  5J28 A;  1S3N A;  3T1I A;  3FGA C;  3H66 A;  1SU1 A;  3K7W C;  3ZU0 A;  4KKZ A;  2WDF A;  3RQZ A;  4FBK A;  3PSO A;  3IB7 A;  4JA7 A;  2BDX A;  2P6B A;  1U32 A;  3DW8 C;  4YKE A;  3DSD A;  1XM7 A;  4I5L C;  4TUI A;  2IE4 C;  5B8I A;  3IB8 A;  1Z2W A;  2Q8U A;  3QG5 C;  4O4K A;  3THN A;  4WWL A;  3RL4 A;  3JYF A;  5DNY A;  5HPE A;  4MOY A;  2ZBM A;  4ORA A;  3RL5 A;  2Z1A A;  4O5G A;  3ZTV A;  3EGH A;  3H69 A;  3QFM A;  4FCX A;  4MP0 A;  4H2I A;  1HPU A;  2GJU A;  5F3W A;  3C5W C;  5JPE A;  3H67 A;  2NPP C;  1II7 A;  3C9F A;  4OR9 A;  1KBP A;  1OID A;  2AHD A;  1Z2X A;  4LU9 A;  3V4Y A;  4IL1 A;  1AUI A;  3N5U A;  4XPN A;  5C1V A;  4UWQ A;  1M63 A;  2WDC A;  3EGG A;  2BCD A;  3ICF A;  3TGH A;  4J6O A;  2NYM C;  4FBW A;  2USH A; 
#chains in the Genus database with same CATH topology
 3H62 B;  3GVE A;  1WAR A;  1S95 A;  4DSY A;  1G5B A;  3P71 C;  1S8E A;  1WAO 1;  1V73 A;  1S70 A;  5EQV A;  4B2O A;  3H63 A;  4UT3 A;  3AUZ A;  4H2G A;  2YEQ A;  1JK7 A;  3D03 A;  4ORC A;  3H61 A;  1MF8 A;  4MOV A;  2Z72 A;  1UF3 A;  1NNW A;  4HD0 A;  2HYO A;  2QFR A;  4JA9 A;  2IE3 C;  3E7B A;  3HVQ A;  1S3M A;  2YVT A;  2HY1 A;  2QJC A;  1QHW A;  3AV0 A;  3QFK A;  4Q7F A;  4F0Z A;  1S3L A;  1W24 A;  4H1S A;  1UTE A;  3QFN A;  4LAC C;  2NYL C;  3IVE A;  1FJM A;  3LL8 A;  4ZVZ A;  2CV9 A;  4M0V A;  2O8A A;  2NXF A;  3CK2 A;  4UT2 A;  4TUG A;  2JOG A;  2O8G A;  2IAE C;  1HO5 A;  4FBQ A;  3KBP A;  3THO B;  2WDD A;  4V0V A;  3H64 A;  1IT6 A;  4NZV A;  2DXN A;  4I5N C;  1T70 A;  2R17 A;  1OI8 A;  1T71 A;  3E7A A;  1HP1 A;  5INB A;  4O43 A;  2HYP A;  4H1Y P;  4G9J A;  5JPF A;  3FLO A;  4IYP C;  3PSN A;  4LTY A;  3H60 A;  3H68 A;  3RL3 A;  3K7V C;  4DHL A;  2WDE A;  5GTU A;  4DT2 A;  1QFC A;  5JJT A;  4V0X A;  2DFJ A;  2ZO9 B;  1USH A;  2DXL A;  2BQ8 X;  3DSC A;  4V0W A;  1TCO A;  3IVD A;  4H2F A;  5IOH A;  2XMO A;  4KBP A;  2KKN A;  4H2B A;  1OIE A;  2A22 A;  3E0J A;  4ZX2 A;  1XZW A;  2QFP A;  3QFO A;  4ORB A;  2Z06 A;  4UT3 B;  4O24 A;  5J28 A;  1S3N A;  3T1I A;  3FGA C;  3H66 A;  1SU1 A;  3K7W C;  3ZU0 A;  4KKZ A;  2WDF A;  3RQZ A;  4FBK A;  3PSO A;  3IB7 A;  4JA7 A;  2BDX A;  2P6B A;  1U32 A;  3DW8 C;  4YKE A;  3DSD A;  1XM7 A;  4I5L C;  4TUI A;  2IE4 C;  5B8I A;  3IB8 A;  1Z2W A;  2Q8U A;  2ZOA A;  3QG5 C;  4O4K A;  3THN A;  4WWL A;  3RL4 A;  3JYF A;  5DNY A;  5HPE A;  4MOY A;  2ZBM A;  4ORA A;  3RL5 A;  2Z1A A;  4O5G A;  3ZTV A;  3EGH A;  3H69 A;  3QFM A;  4FCX A;  4MP0 A;  4H2I A;  1HPU A;  2GJU A;  5F3W A;  3C5W C;  5JPE A;  3H67 A;  2NPP C;  1II7 A;  3C9F A;  4OR9 A;  1KBP A;  1OID A;  2AHD A;  1Z2X A;  4LU9 A;  3V4Y A;  4IL1 A;  1AUI A;  3N5U A;  4XPN A;  5C1V A;  4UWQ A;  1M63 A;  2WDC A;  3EGG A;  2BCD A;  3ICF A;  3TGH A;  4J6O A;  2NYM C;  4FBW A;  2USH A; 
#chains in the Genus database with same CATH homology
 3H62 B;  3GVE A;  1WAR A;  1S95 A;  4DSY A;  1G5B A;  3P71 C;  1S8E A;  1WAO 1;  1V73 A;  1S70 A;  5EQV A;  4B2O A;  3H63 A;  4UT3 A;  3AUZ A;  4H2G A;  2YEQ A;  1JK7 A;  3D03 A;  4ORC A;  3H61 A;  1MF8 A;  4MOV A;  2Z72 A;  1UF3 A;  1NNW A;  4HD0 A;  2HYO A;  2QFR A;  4JA9 A;  2IE3 C;  3E7B A;  3HVQ A;  1S3M A;  2YVT A;  2HY1 A;  2QJC A;  1QHW A;  3AV0 A;  3QFK A;  4Q7F A;  4F0Z A;  1S3L A;  1W24 A;  4H1S A;  1UTE A;  3QFN A;  4LAC C;  2NYL C;  3IVE A;  1FJM A;  3LL8 A;  4ZVZ A;  2CV9 A;  4M0V A;  2O8A A;  2NXF A;  3CK2 A;  4UT2 A;  4TUG A;  2JOG A;  2O8G A;  2IAE C;  1HO5 A;  4FBQ A;  3KBP A;  3THO B;  2WDD A;  4V0V A;  3H64 A;  1IT6 A;  4NZV A;  2DXN A;  4I5N C;  1T70 A;  2R17 A;  1OI8 A;  1T71 A;  3E7A A;  1HP1 A;  5INB A;  4O43 A;  2HYP A;  4H1Y P;  4G9J A;  5JPF A;  3FLO A;  4IYP C;  3PSN A;  4LTY A;  3H60 A;  3H68 A;  3RL3 A;  3K7V C;  4DHL A;  2WDE A;  5GTU A;  4DT2 A;  1QFC A;  5JJT A;  4V0X A;  2DFJ A;  2ZO9 B;  1USH A;  2DXL A;  2BQ8 X;  3DSC A;  4V0W A;  1TCO A;  3IVD A;  4H2F A;  5IOH A;  2XMO A;  4KBP A;  2KKN A;  4H2B A;  1OIE A;  2A22 A;  3E0J A;  4ZX2 A;  1XZW A;  2QFP A;  3QFO A;  4ORB A;  2Z06 A;  4UT3 B;  4O24 A;  5J28 A;  1S3N A;  3T1I A;  3FGA C;  3H66 A;  1SU1 A;  3K7W C;  3ZU0 A;  4KKZ A;  2WDF A;  3RQZ A;  4FBK A;  3PSO A;  3IB7 A;  4JA7 A;  2BDX A;  2P6B A;  1U32 A;  3DW8 C;  4YKE A;  3DSD A;  1XM7 A;  4I5L C;  4TUI A;  2IE4 C;  5B8I A;  3IB8 A;  1Z2W A;  2Q8U A;  2ZOA A;  3QG5 C;  4O4K A;  3THN A;  4WWL A;  3RL4 A;  3JYF A;  5DNY A;  5HPE A;  4MOY A;  2ZBM A;  4ORA A;  3RL5 A;  2Z1A A;  4O5G A;  3ZTV A;  3EGH A;  3H69 A;  3QFM A;  4FCX A;  4MP0 A;  4H2I A;  1HPU A;  2GJU A;  5F3W A;  3C5W C;  5JPE A;  3H67 A;  2NPP C;  1II7 A;  3C9F A;  4OR9 A;  1KBP A;  1OID A;  2AHD A;  1Z2X A;  4LU9 A;  3V4Y A;  4IL1 A;  1AUI A;  3N5U A;  4XPN A;  5C1V A;  4UWQ A;  1M63 A;  2WDC A;  3EGG A;  2BCD A;  3ICF A;  3TGH A;  4J6O A;  2NYM C;  4FBW A;  2USH A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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